Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FDP8U9 Arachis hypogaea HOM05D040116 ORTHO05D009646 1.2e-189 666.4 350 100.0
arahy.Tifrunner.gnm1.ann1.M7PE33 Arachis hypogaea HOM05D040116 ORTHO05D009646 2.1e-88 330.1 272 69.9
arahy.Tifrunner.gnm1.ann1.511LEY Arachis hypogaea HOM05D040116 ORTHO05D085297 3.1e-52 209.9 218 58.3
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 3.5e-35 153.3 91 95.6
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 5.0e-34 149.4 91 93.4
arahy.Tifrunner.gnm1.ann1.92ZNWV Arachis hypogaea HOM05D016655 ORTHO05D083812 5.9e-19 99.4 191 40.8
arahy.Tifrunner.gnm1.ann1.XAPW6D Arachis hypogaea HOM05D000023 ORTHO05D009998 8.9e-15 85.5 155 42.6
arahy.Tifrunner.gnm1.ann1.JS5KS9 Arachis hypogaea HOM05D000230 ORTHO05D000176 7.5e-14 82.4 46 80.4
arahy.Tifrunner.gnm1.ann1.V659E7 Arachis hypogaea HOM05D000230 ORTHO05D000176 2.8e-13 80.5 39 89.7
arahy.Tifrunner.gnm1.ann1.4YM5KJ Arachis hypogaea HOM05D000230 ORTHO05D000176 3.7e-13 80.1 39 89.7
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 1.4e-12 78.2 91 59.3
Medtr8g093630 Medicago truncatula HOM05D000230 ORTHO05D000176 2.4e-12 77.4 39 84.6
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 1.2e-11 75.1 98 57.1
Glyma.05G191600 Glycine max HOM05D000230 ORTHO05D000176 2.0e-11 74.3 44 72.7
Glyma.08G156800 Glycine max HOM05D000230 ORTHO05D000176 2.0e-11 74.3 44 72.7
Glyma.04G213100 Glycine max HOM05D000230 ORTHO05D000176 2.7e-11 73.9 44 72.7
Manes.12G155300 Manihot esculenta HOM05D000230 ORTHO05D000176 2.7e-11 73.9 46 67.4
TPR.G8157 Trifolium pratense HOM05D000230 ORTHO05D000176 2.7e-11 73.9 39 79.5
Psat5g062520 Pisum sativum HOM05D000230 ORTHO05D000176 4.5e-11 73.2 39 76.9
Ca_16943_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 7.8e-11 72.4 39 76.9
Ca_16962_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 7.8e-11 72.4 39 76.9
arahy.Tifrunner.gnm1.ann1.B771QR Arachis hypogaea HOM05D000230 ORTHO05D000176 1.0e-10 72.0 39 74.4
arahy.Tifrunner.gnm1.ann1.YYM7FJ Arachis hypogaea HOM05D000230 ORTHO05D000176 1.0e-10 72.0 39 74.4
Psat7g046280 Pisum sativum HOM05D000230 ORTHO05D000176 1.3e-10 71.6 39 76.9
Oeu037822.1 Olea europaea HOM05D000230 ORTHO05D000176 2.3e-10 70.9 40 70.0
FAN23G0965 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.9e-10 70.5 42 66.7
FAN23G2391 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.9e-10 70.5 42 66.7
FAN26G0885 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.9e-10 70.5 42 66.7
Lj1g0014162 Lotus japonicus HOM05D000230 ORTHO05D000176 2.9e-10 70.5 44 68.2
Oeu050136.1 Olea europaea HOM05D000230 ORTHO05D000176 2.9e-10 70.5 46 63.0
PSO541G0109 Papaver somniferum HOM05D000230 ORTHO05D000176 2.9e-10 70.5 39 74.4
PSO675G2931 Papaver somniferum HOM05D000230 ORTHO05D000176 2.9e-10 70.5 39 74.4
FAN28G0249 Fragaria x ananassa HOM05D000230 ORTHO05D000176 5.0e-10 69.7 39 71.8
MBI15_g43502_MAGBIO Magnolia biondii HOM05D000230 ORTHO05D000176 5.0e-10 69.7 44 65.9
ClCG02G000530 Citrullus lanatus HOM05D000230 ORTHO05D000176 8.6e-10 68.9 44 65.9
Lalb_Chr23g0272591 Lupinus albus HOM05D000230 ORTHO05D000176 8.6e-10 68.9 48 62.5
Sabra05G0050100 Salix brachista HOM05D000230 ORTHO05D000176 1.1e-09 68.6 39 69.2
Medtr3g096200 Medicago truncatula HOM05D000230 ORTHO05D000176 1.5e-09 68.2 44 68.2
Ciclev10000018m.g Citrus clementina HOM05D000230 ORTHO05D000176 1.9e-09 67.8 47 61.7
Haze_25227 Corylus avellana HOM05D000230 ORTHO05D000176 1.9e-09 67.8 46 60.9
CsaV3_2G018300 Cucumis sativus L. HOM05D000230 ORTHO05D000176 1.9e-09 67.8 44 63.6
Oeu004247.1 Olea europaea HOM05D000230 ORTHO05D000176 1.9e-09 67.8 39 69.2
ATR0184G033 Amborella trichopoda HOM05D000230 ORTHO05D000176 2.5e-09 67.4 44 61.4
FvH4_1g24300 Fragaria vesca HOM05D000230 ORTHO05D000176 2.5e-09 67.4 44 63.6
TPR.G37378 Trifolium pratense HOM05D000230 ORTHO05D000176 2.5e-09 67.4 39 71.8
arahy.Tifrunner.gnm1.ann1.SX799G Arachis hypogaea HOM05D000660 ORTHO05D000766 3.3e-09 67.0 55 61.8
CSS0021510 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 3.3e-09 67.0 51 56.9
CiPaw.03G122400 Carya illinoinensis HOM05D000230 ORTHO05D000176 3.3e-09 67.0 39 66.7
Ca_17639_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 3.3e-09 67.0 71 52.1
Dinv24353 Davidia involucrata HOM05D000230 ORTHO05D000176 4.3e-09 66.6 39 66.7
arahy.Tifrunner.gnm1.ann1.81XE7C Arachis hypogaea HOM05D001673 ORTHO05D012548 5.6e-09 66.2 146 41.8
MELO3C023241.2 Cucumis melo HOM05D000230 ORTHO05D000176 5.6e-09 66.2 44 61.4
MELO3C023251.2 Cucumis melo HOM05D000230 ORTHO05D000176 5.6e-09 66.2 44 61.4
CsaV3_2G018230 Cucumis sativus L. HOM05D000230 ORTHO05D000176 5.6e-09 66.2 44 61.4
TAR628G0760 Trochodendron aralioides HOM05D000230 ORTHO05D000176 5.6e-09 66.2 44 61.4
CANSAT01G0637 Cannabis sativa HOM05D000230 ORTHO05D000176 7.3e-09 65.9 44 61.4
Cfa002887 Carpinus fangiana HOM05D000230 ORTHO05D000176 7.3e-09 65.9 39 64.1
Lalb_Chr11g0068401 Lupinus albus HOM05D000230 ORTHO05D000176 7.3e-09 65.9 39 74.4
TAR381G0447 Trochodendron aralioides HOM05D000230 ORTHO05D000176 9.5e-09 65.5 44 61.4
GSVIVG01026489001 Vitis vinifera HOM05D000230 ORTHO05D000176 9.5e-09 65.5 39 64.1
Duzib187G0485 Durio zibethinus HOM05D000230 ORTHO05D000176 1.2e-08 65.1 44 61.4
VMungo0251G2149 Vigna mungo HOM05D000230 ORTHO05D000176 1.2e-08 65.1 44 68.2
EL10Ac6g15312 Beta vulgaris HOM05D000230 ORTHO05D000176 1.6e-08 64.7 39 64.1
Nitab4.5_0000856g0120 Nicotiana tabacum HOM05D000230 ORTHO05D000176 1.6e-08 64.7 39 69.2
Nitab4.5_0010049g0010 Nicotiana tabacum HOM05D000230 ORTHO05D000176 1.6e-08 64.7 39 69.2
Potri.005G058300 Populus trichocarpa HOM05D000230 ORTHO05D000176 1.6e-08 64.7 44 59.1
CAN.G652.13 Capsicum annuum HOM05D000230 ORTHO05D000176 2.1e-08 64.3 53 56.6
Atru.chr4.1976 Acer truncatum HOM05D000230 ORTHO05D000176 2.8e-08 63.9 44 61.4
Actinidia06625 Actinidia chinensis HOM05D000230 ORTHO05D000176 2.8e-08 63.9 39 66.7
arahy.Tifrunner.gnm1.ann1.A47W8V Arachis hypogaea HOM05D000619 ORTHO05D012567 3.6e-08 63.5 70 57.1
Peaxi162Scf00183g00421 Petunia axillaris HOM05D000230 ORTHO05D000176 3.6e-08 63.5 39 66.7
Thecc.01G131200 Theobroma cacao HOM05D000230 ORTHO05D000176 3.6e-08 63.5 44 59.1
TWI79G1186 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 3.6e-08 63.5 43 60.5
Gohir.A10G156100 Gossypium hirsutum HOM05D000230 ORTHO05D000176 4.7e-08 63.2 44 63.6
Gorai.011G120300 Gossypium raimondii HOM05D000230 ORTHO05D000176 4.7e-08 63.2 44 63.6
QL06p028617 Quercus lobata HOM05D000230 ORTHO05D000176 4.7e-08 63.2 53 50.9
SHI11473 Sapria himalayana HOM05D000230 ORTHO05D000176 4.7e-08 63.2 44 59.1
THA.LOC104807157 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 4.7e-08 63.2 44 56.8
Aqoxy7G03480 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 6.1e-08 62.8 44 63.6
Solyc11g005980.3 Solanum lycopersicum HOM05D000230 ORTHO05D000176 6.1e-08 62.8 53 54.7
Sopen11g001920 Solanum pennellii HOM05D000230 ORTHO05D000176 6.1e-08 62.8 53 54.7
vmacro18666 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 6.1e-08 62.8 39 66.7
Lj4C844G3 Lonicera japonica HOM05D000230 ORTHO05D000176 8.0e-08 62.4 39 64.1
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 8.0e-08 62.4 91 51.6
SalBow1G4131 Salvia bowleyana HOM05D000230 ORTHO05D000176 1.0e-07 62.0 52 55.8
HPP92_017512 Vanilla planifolia HOM05D000230 ORTHO05D000176 1.0e-07 62.0 44 63.6
Carub.0003s2817 Capsella rubella HOM05D000230 ORTHO05D000176 1.8e-07 61.2 44 59.1
AL3G45540 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 2.3e-07 60.8 44 59.1
AT2G13680 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 2.3e-07 60.8 44 59.1
CARHR104750 Cardamine hirsuta HOM05D000230 ORTHO05D000176 2.3e-07 60.8 44 59.1
HanXRQChr09g0258671 Helianthus annuus HOM05D000230 ORTHO05D000176 2.3e-07 60.8 39 64.1
Aqoxy2G01644 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 3.1e-07 60.5 53 50.9
AUR62003558 Chenopodium quinoa HOM05D000230 ORTHO05D000176 3.1e-07 60.5 39 61.5
Hund04407 Selenicereus undatus HOM05D000230 ORTHO05D000176 3.1e-07 60.5 39 59.0
HPP92_010433 Vanilla planifolia HOM05D000230 ORTHO05D000176 3.1e-07 60.5 44 59.1
Cc07_g18440 Coffea canephora HOM05D000230 ORTHO05D000176 4.0e-07 60.1 44 59.1
VMungo1309G2269 Vigna mungo HOM05D000230 ORTHO05D000176 4.0e-07 60.1 80 41.2
Migut.H00724 Erythranthe guttata HOM05D000230 ORTHO05D000176 5.2e-07 59.7 44 59.1
SGA_v2.0_scaffold370G50126 Striga asiatica HOM05D000230 ORTHO05D000176 5.2e-07 59.7 52 53.8
Migut.L00886 Erythranthe guttata HOM05D000230 ORTHO05D000176 6.8e-07 59.3 44 63.6
Thhalv10022518m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 6.8e-07 59.3 39 59.0
SGA_v2.0_scaffold289G47260 Striga asiatica HOM05D000230 ORTHO05D000176 6.8e-07 59.3 52 53.8
AUR62017872 Chenopodium quinoa HOM05D000230 ORTHO05D000176 8.9e-07 58.9 39 59.0
COL.COLO4_35732 Corchorus olitorius HOM05D000230 ORTHO05D000176 8.9e-07 58.9 44 56.8
Hma1.2p1_0476F.1_g160885 Hydrangea macrophylla HOM05D000230 ORTHO05D000176 8.9e-07 58.9 44 56.8
Sed0007581 Sechium edule HOM05D000230 ORTHO05D000176 8.9e-07 58.9 44 56.8
Sc03g0006030 Simmondsia chinensis HOM05D000230 ORTHO05D000176 8.9e-07 58.9 39 59.0
Gohir.D10G109300 Gossypium hirsutum HOM05D000230 ORTHO05D000176 1.2e-06 58.5 44 59.1
Gorai.011G119900 Gossypium raimondii HOM05D000230 ORTHO05D000176 1.2e-06 58.5 44 59.1
HPP92_010395 Vanilla planifolia HOM05D000230 ORTHO05D000176 1.2e-06 58.5 44 56.8
Cpa.g.sc42.151 Carica papaya HOM05D000230 ORTHO05D000176 1.5e-06 58.2 53 49.1
Os06g0182300 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 1.5e-06 58.2 44 56.8
Eucgr.I00208 Eucalyptus grandis HOM05D000230 ORTHO05D000176 2.0e-06 57.8 51 52.9
RcHm_v2.0_Chr2g0120781 Rosa chinensis HOM05D000230 ORTHO05D000176 2.0e-06 57.8 80 38.8
arahy.Tifrunner.gnm1.ann1.HF0N31 Arachis hypogaea HOM05D002379 ORTHO05D019458 3.4e-06 57.0 94 44.7
arahy.Tifrunner.gnm1.ann1.SYJW5F Arachis hypogaea HOM05D004747 ORTHO05D006051 3.4e-06 57.0 127 39.4
arahy.Tifrunner.gnm1.ann1.U84WIL Arachis hypogaea HOM05D001882 ORTHO05D019458 3.4e-06 57.0 94 44.7
Gohir.A10G156400 Gossypium hirsutum HOM05D000230 ORTHO05D000176 4.4e-06 56.6 44 56.8
Hund12766 Selenicereus undatus HOM05D000230 ORTHO05D000176 4.4e-06 56.6 60 43.3
Sp3g27070 Schrenkiella parvula HOM05D000230 ORTHO05D000176 5.8e-06 56.2 44 50.0
vmacro12807 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 7.5e-06 55.8 106 35.8
PSO339G5013 Papaver somniferum HOM05D000230 ORTHO05D000176 9.8e-06 55.5 51 51.0
PSO384G4929 Papaver somniferum HOM05D000230 ORTHO05D000176 9.8e-06 55.5 51 51.0


User provided reference genes

Program Settings