Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 6.7e-78 293.9 143 100.0
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 1.3e-36 156.8 90 85.6
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 5.9e-34 147.9 93 78.5
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 1.3e-33 146.7 96 78.1
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 7.3e-32 141.0 81 84.0
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 3.6e-31 138.7 97 72.2
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 3.6e-31 138.7 97 72.2
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-30 136.7 72 91.7
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-30 136.7 72 91.7
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-30 136.7 72 91.7
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.4e-30 136.7 72 91.7
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.4e-30 136.7 72 91.7
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.4e-30 136.7 72 91.7
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 2.3e-30 136.0 97 72.2
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 4.0e-30 135.2 97 71.1
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 8.9e-30 134.0 97 70.1
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.2e-29 133.7 72 88.9
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 1.2e-29 133.7 97 70.1
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 2.0e-29 132.9 90 75.6
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 2.6e-29 132.5 72 87.5
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 2.6e-29 132.5 72 87.5
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 2.6e-29 132.5 73 86.3
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 2.6e-29 132.5 73 86.3
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 2.6e-29 132.5 73 86.3
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 2.6e-29 132.5 73 86.3
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 2.6e-29 132.5 73 86.3
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 2.6e-29 132.5 73 86.3
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 2.6e-29 132.5 73 86.3
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 2.6e-29 132.5 73 86.3
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 2.6e-29 132.5 73 86.3
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 2.6e-29 132.5 73 86.3
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 3.4e-29 132.1 97 70.1
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 5.8e-29 131.3 72 86.1
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 5.8e-29 131.3 72 86.1
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.8e-29 131.3 72 88.9
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.8e-29 131.3 72 88.9
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.8e-29 131.3 72 88.9
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.8e-29 131.3 72 88.9
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 7.5e-29 131.0 97 69.1
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 7.5e-29 131.0 97 69.1
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 9.8e-29 130.6 72 88.9
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 9.8e-29 130.6 72 87.5
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 2.9e-28 129.0 70 88.6
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 3.7e-28 128.6 72 87.5
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 4.9e-28 128.3 73 84.9
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 6.4e-28 127.9 97 69.1
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.4e-28 127.9 72 86.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 6.4e-28 127.9 97 68.0
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-27 126.7 72 86.1
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 2.4e-27 125.9 66 89.4
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.2e-27 125.6 72 84.7
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 4.1e-27 125.2 71 81.7
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 2.0e-26 122.9 72 83.3
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.5e-26 122.1 72 80.6
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 6.0e-26 121.3 72 83.3
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 6.0e-26 121.3 72 81.9
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 1.7e-25 119.8 67 83.6
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.7e-25 119.8 72 80.6
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 2.3e-25 119.4 72 84.7
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 2.3e-25 119.4 72 84.7
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 1.1e-24 117.1 84 70.2
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.9e-24 116.3 72 81.9
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 5.6e-24 114.8 63 87.3
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.1e-22 110.5 59 88.1
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 1.4e-22 110.2 72 75.0
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 1.5e-21 106.7 72 75.0
arahy.Tifrunner.gnm1.ann1.XUX2EX Arachis hypogaea HOM05D000963 ORTHO05D004271 2.9e-20 102.4 50 94.0
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 3.7e-20 102.1 93 59.1
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 4.9e-20 101.7 93 53.8
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 6.4e-20 101.3 97 55.7
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 1.9e-19 99.8 54 88.9
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 5.4e-19 98.2 77 66.2
DCAR_003888 Daucus carota HOM05D004182 ORTHO05D004271 5.4e-19 98.2 54 87.0
SalBow1G6083 Salvia bowleyana HOM05D008259 ORTHO05D013014 1.2e-18 97.1 71 69.0
Nitab4.5_0000046g0170 Nicotiana tabacum HOM05D020983 ORTHO05D020217 4.6e-18 95.1 54 85.2
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 4.6e-18 95.1 49 89.8
Nitab4.5_0003644g0040 Nicotiana tabacum HOM05D001966 ORTHO05D010127 1.3e-17 93.6 55 80.0
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 2.3e-17 92.8 54 83.3
arahy.Tifrunner.gnm1.ann1.Y4U9X5 Arachis hypogaea HOM05D008259 ORTHO05D004271 3.0e-17 92.4 44 95.5
Nitab4.5_0001379g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.6e-17 90.9 54 79.6
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 1.9e-16 89.7 89 58.4
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 1.9e-16 89.7 92 60.9
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 7.3e-16 87.8 50 84.0
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 3.6e-15 85.5 53 79.2
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 8.1e-15 84.3 45 84.4
Gorai.003G057800 Gossypium raimondii HOM05D004182 ORTHO05D004271 1.1e-14 84.0 53 79.2
Nitab4.5_0014528g0020 Nicotiana tabacum HOM05D008259 ORTHO05D004271 1.4e-14 83.6 43 88.4
EL10Ac7g17375 Beta vulgaris HOM05D004182 ORTHO05D004271 2.3e-14 82.8 41 90.2
EL10As15g24134 Beta vulgaris HOM05D004182 ORTHO05D004271 2.3e-14 82.8 41 90.2
Gohir.D05G007050 Gossypium hirsutum HOM05D004182 ORTHO05D004271 3.1e-14 82.4 42 90.5
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 6.8e-14 81.3 49 81.6
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 2.0e-13 79.7 49 79.6
Nitab4.5_0001554g0040 Nicotiana tabacum HOM05D004182 ORTHO05D004271 7.5e-13 77.8 56 69.6
Peaxi162Scf00080g00510 Petunia axillaris HOM05D011856 ORTHO05D013014 2.2e-12 76.3 46 78.3
Migut.D01390 Erythranthe guttata HOM05D004182 ORTHO05D004271 2.9e-12 75.9 36 94.4
Migut.D01394 Erythranthe guttata HOM05D004182 ORTHO05D004271 2.9e-12 75.9 36 94.4
vmacro22394 Vaccinium macrocarpon HOM05D008259 ORTHO05D004271 3.7e-12 75.5 43 81.4
Gohir.D03G055050 Gossypium hirsutum HOM05D004182 ORTHO05D004271 1.4e-11 73.6 45 77.8
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 1.9e-11 73.2 38 89.5
Sc23g0003920 Simmondsia chinensis HOM05D000806 ORTHO05D002320 1.9e-11 73.2 39 84.6
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 5.4e-11 71.6 39 82.1
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 5.4e-11 71.6 39 82.1
BcaNung07086 Brassica carinata HOM05D001966 ORTHO05D011119 7.1e-11 71.2 38 86.8
Ca_24279_v3 Cicer arietinum L. HOM05D004182 ORTHO05D004271 1.6e-10 70.1 41 82.9
arahy.Tifrunner.gnm1.ann1.T8J8BP Arachis hypogaea HOM05D000216 ORTHO05D003638 3.5e-10 68.9 32 93.8
Atru.chr6.228 Acer truncatum HOM05D004182 ORTHO05D004271 1.0e-09 67.4 44 72.7
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 1.3e-09 67.0 74 52.7
arahy.Tifrunner.gnm1.ann1.S2CMM5 Arachis hypogaea HOM05D000002 ORTHO05D000047 1.9e-08 63.2 31 90.3
Lsat_1_v5_gn_2_31300 Lactuca sativa HOM05D001070 ORTHO05D002096 2.5e-08 62.8 43 72.1
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 7.3e-08 61.2 35 80.0
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 9.5e-08 60.8 39 76.9
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 6.2e-07 58.2 29 86.2
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 6.2e-07 58.2 110 37.3
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 6.2e-07 58.2 75 44.0
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 8.1e-07 57.8 121 34.7
Sed0008539 Sechium edule HOM05D008259 ORTHO05D013014 1.4e-06 57.0 33 78.8
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 1.8e-06 56.6 27 92.6
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 1.8e-06 56.6 75 42.7
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 3.1e-06 55.8 54 48.1
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 3.1e-06 55.8 75 41.3
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 4.0e-06 55.5 75 42.7
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 4.0e-06 55.5 73 41.1
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 5.2e-06 55.1 116 35.3
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 5.2e-06 55.1 54 46.3
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 5.2e-06 55.1 59 42.4
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 5.2e-06 55.1 75 42.7
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 5.2e-06 55.1 75 42.7
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 6.8e-06 54.7 68 42.6
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 8.9e-06 54.3 63 44.4


User provided reference genes

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