Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F69QA3 Arachis hypogaea HOM05D000618 ORTHO05D000454 2.2e-50 201.8 91 100.0
arahy.Tifrunner.gnm1.ann1.XFR423 Arachis hypogaea HOM05D000618 ORTHO05D000454 2.2e-50 201.8 91 100.0
Glyma.18G292200 Glycine max HOM05D000618 ORTHO05D000454 6.1e-16 87.4 78 60.3
Glyma.02G090900 Glycine max HOM05D000618 ORTHO05D000454 2.3e-15 85.5 78 59.0
CiPaw.04G045300 Carya illinoinensis HOM05D000618 ORTHO05D000454 5.1e-15 84.3 76 53.9
Prupe.3G151200 Prunus persica HOM05D000618 ORTHO05D000454 1.1e-14 83.2 77 55.8
Manes.02G073300 Manihot esculenta HOM05D000618 ORTHO05D000454 1.9e-14 82.4 76 55.3
TAR374G0631 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.9e-14 82.4 97 48.5
TAR622G0383 Trochodendron aralioides HOM05D000618 ORTHO05D000454 4.3e-14 81.3 99 46.5
Haze_14205 Corylus avellana HOM05D000618 ORTHO05D000454 7.4e-14 80.5 78 51.3
GSVIVG01030910001 Vitis vinifera HOM05D000618 ORTHO05D000454 7.4e-14 80.5 76 53.9
Actinidia04710 Actinidia chinensis HOM05D000618 ORTHO05D000454 9.7e-14 80.1 76 52.6
Duzib133G0075 Durio zibethinus HOM05D000618 ORTHO05D000454 2.2e-13 79.0 76 55.3
QL02p049083 Quercus lobata HOM05D000618 ORTHO05D000454 2.8e-13 78.6 77 54.5
TAR629G1543 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.7e-13 78.2 77 53.2
Aqoxy3G00163 Aquilegia oxysepala HOM05D000618 ORTHO05D000454 4.8e-13 77.8 97 48.5
Thecc.04G124600 Theobroma cacao HOM05D000618 ORTHO05D000454 4.8e-13 77.8 76 55.3
SalBow3G2204 Salvia bowleyana HOM05D000618 ORTHO05D000454 8.2e-13 77.0 76 53.9
SalBow3G3315 Salvia bowleyana HOM05D000618 ORTHO05D000454 8.2e-13 77.0 76 53.9
CiPaw.03G066600 Carya illinoinensis HOM05D000618 ORTHO05D000454 1.1e-12 76.6 76 51.3
Hma1.2p1_0500F.1_g166930 Hydrangea macrophylla HOM05D000618 ORTHO05D000454 1.8e-12 75.9 77 50.6
MD09G1259600 Malus domestica HOM05D000618 ORTHO05D000454 1.8e-12 75.9 77 53.2
Lj4A180T58 Lonicera japonica HOM05D000618 ORTHO05D000454 3.1e-12 75.1 82 50.0
Oeu047427.1 Olea europaea HOM05D000618 ORTHO05D000454 3.1e-12 75.1 77 50.6
Lj1g0023043 Lotus japonicus HOM05D000618 ORTHO05D000454 5.3e-12 74.3 77 53.2
Nn4g24061 Nelumbo nucifera HOM05D000618 ORTHO05D000454 5.3e-12 74.3 76 51.3
RcHm_v2.0_Chr3g0493641 Rosa chinensis HOM05D000618 ORTHO05D000454 5.3e-12 74.3 75 52.0
MSTRG.13571 Avicennia marina HOM05D000618 ORTHO05D000454 9.1e-12 73.6 76 46.1
CSS0013869 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 9.1e-12 73.6 76 48.7
CSS0013602 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.2e-11 73.2 74 50.0
MBI10_g37694_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 1.2e-11 73.2 76 48.7
MSTRG.23606 Avicennia marina HOM05D000618 ORTHO05D000454 1.5e-11 72.8 76 48.7
CSS0019021 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.5e-11 72.8 76 48.7
Ciclev10012424m.g Citrus clementina HOM05D000618 ORTHO05D000454 1.5e-11 72.8 80 48.8
Nn3g18034 Nelumbo nucifera HOM05D000618 ORTHO05D000454 2.0e-11 72.4 76 51.3
Phvul.008G009800 Phaseolus vulgaris HOM05D000618 ORTHO05D000454 2.0e-11 72.4 76 55.3
Potri.004G093500 Populus trichocarpa HOM05D000618 ORTHO05D000454 2.6e-11 72.0 77 53.2
Ciclev10016251m.g Citrus clementina HOM05D000618 ORTHO05D000454 4.5e-11 71.2 77 53.2
Lj3A876T41 Lonicera japonica HOM05D000618 ORTHO05D000454 4.5e-11 71.2 76 48.7
SalBow8G1660 Salvia bowleyana HOM05D000618 ORTHO05D000454 4.5e-11 71.2 77 44.2
Cfa008575 Carpinus fangiana HOM05D000618 ORTHO05D000454 5.9e-11 70.9 97 44.3
Gohir.D07G080000 Gossypium hirsutum HOM05D000618 ORTHO05D000454 5.9e-11 70.9 74 51.4
Gorai.001G084900 Gossypium raimondii HOM05D000618 ORTHO05D000454 5.9e-11 70.9 74 51.4
PSO210G0257 Papaver somniferum HOM05D000618 ORTHO05D000454 5.9e-11 70.9 99 42.4
GSVIVG01011789001 Vitis vinifera HOM05D000618 ORTHO05D000454 5.9e-11 70.9 97 44.3
CDE07G2044 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 7.7e-11 70.5 75 48.0
Gohir.A07G075500 Gossypium hirsutum HOM05D000618 ORTHO05D000454 7.7e-11 70.5 74 51.4
TPR.G28548 Trifolium pratense HOM05D000618 ORTHO05D000454 2.2e-10 68.9 77 46.8
VMungo1383G2572 Vigna mungo HOM05D000618 ORTHO05D000454 2.2e-10 68.9 78 53.8
PGR042G3311 Punica granatum HOM05D000618 ORTHO05D000454 2.9e-10 68.6 78 48.7
HPP92_003726 Vanilla planifolia HOM05D000618 ORTHO05D000454 2.9e-10 68.6 76 48.7
Cpa.g.sc116.8 Carica papaya HOM05D000618 ORTHO05D000454 3.8e-10 68.2 76 50.0
Potri.010G115600 Populus trichocarpa HOM05D000618 ORTHO05D000454 3.8e-10 68.2 77 48.1
RcHm_v2.0_Chr2g0133281 Rosa chinensis HOM05D000618 ORTHO05D000454 3.8e-10 68.2 75 49.3
CANSAT01G2396 Cannabis sativa HOM05D000618 ORTHO05D000454 5.0e-10 67.8 76 46.1
Potri.017G122300 Populus trichocarpa HOM05D000618 ORTHO05D000454 5.0e-10 67.8 77 46.8
Cc07_g08330 Coffea canephora HOM05D000618 ORTHO05D000454 6.5e-10 67.4 76 48.7
Sabra10G0085500 Salix brachista HOM05D000618 ORTHO05D000454 6.5e-10 67.4 77 48.1
Sabra10G0087200 Salix brachista HOM05D000618 ORTHO05D000454 6.5e-10 67.4 77 48.1
PSO832G1671 Papaver somniferum HOM05D000618 ORTHO05D000454 8.5e-10 67.0 97 42.3
Sabra04G0062600 Salix brachista HOM05D000618 ORTHO05D000454 8.5e-10 67.0 77 50.6
Rhsim08G0084600 Rhododendron simsii HOM05D000618 ORTHO05D000454 1.1e-09 66.6 76 47.4
Lalb_Chr10g0091521 Lupinus albus HOM05D000618 ORTHO05D000454 1.4e-09 66.2 89 42.7
Lalb_Chr10g0091561 Lupinus albus HOM05D000618 ORTHO05D000454 1.4e-09 66.2 89 42.7
Cc11_g09060 Coffea canephora HOM05D000618 ORTHO05D000454 2.5e-09 65.5 76 43.4
RcHm_v2.0_Chr4g0440831 Rosa chinensis HOM05D000618 ORTHO05D000454 2.5e-09 65.5 78 46.2
Dinv05884 Davidia involucrata HOM05D000618 ORTHO05D000454 3.2e-09 65.1 99 40.4
Lj2A437G31 Lonicera japonica HOM05D000618 ORTHO05D000454 3.2e-09 65.1 76 46.1
Dinv09245 Davidia involucrata HOM05D000618 ORTHO05D000454 4.2e-09 64.7 105 39.0
Dinv16192 Davidia involucrata HOM05D000618 ORTHO05D000454 4.2e-09 64.7 105 39.0
Duzib138G0428 Durio zibethinus HOM05D000618 ORTHO05D000454 4.2e-09 64.7 76 48.7
Lalb_Chr02g0145551 Lupinus albus HOM05D000618 ORTHO05D000454 4.2e-09 64.7 76 48.7
Oeu044329.1 Olea europaea HOM05D000618 ORTHO05D000454 4.2e-09 64.7 76 46.1
QL01p002306 Quercus lobata HOM05D000618 ORTHO05D000454 4.2e-09 64.7 76 47.4
vmacro05493 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 4.2e-09 64.7 84 41.7
vmacro18060 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 4.2e-09 64.7 76 47.4
Lalb_Chr10g0092931 Lupinus albus HOM05D000618 ORTHO05D000454 5.5e-09 64.3 89 41.6
Manes.15G154550 Manihot esculenta HOM05D000618 ORTHO05D000454 7.2e-09 63.9 73 42.5
Manes.15G176652 Manihot esculenta HOM05D000618 ORTHO05D000454 7.2e-09 63.9 73 42.5
SGA_v2.0_scaffold14G06930 Striga asiatica HOM05D000618 ORTHO05D000454 7.2e-09 63.9 76 43.4
FAN12G2757 Fragaria x ananassa HOM05D000618 ORTHO05D000454 9.4e-09 63.5 77 45.5
FAN22G2196 Fragaria x ananassa HOM05D000618 ORTHO05D000454 9.4e-09 63.5 77 45.5
Gohir.A01G153800 Gossypium hirsutum HOM05D000618 ORTHO05D000454 9.4e-09 63.5 76 46.1
Gohir.D01G100200 Gossypium hirsutum HOM05D000618 ORTHO05D000454 9.4e-09 63.5 76 46.1
Gorai.002G181200 Gossypium raimondii HOM05D000618 ORTHO05D000454 9.4e-09 63.5 76 46.1
CSS0048312 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.2e-08 63.2 76 44.7
CiPaw.06G013700 Carya illinoinensis HOM05D000618 ORTHO05D000454 1.6e-08 62.8 76 47.4
CiPaw.05G247200 Carya illinoinensis HOM05D000618 ORTHO05D000454 2.1e-08 62.4 74 43.2
Potri.008G127400 Populus trichocarpa HOM05D000618 ORTHO05D000454 2.1e-08 62.4 76 44.7
TPR.G4822 Trifolium pratense HOM05D000618 ORTHO05D000454 2.1e-08 62.4 76 44.7
Atru.chr11.366 Acer truncatum HOM05D000618 ORTHO05D000454 2.7e-08 62.0 77 44.2
CSS0038889 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 2.7e-08 62.0 76 42.1
CDE06G2683 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 2.7e-08 62.0 75 45.3
FvH4_4g32130 Fragaria vesca HOM05D000618 ORTHO05D000454 2.7e-08 62.0 77 44.2
FAN07G2772 Fragaria x ananassa HOM05D000618 ORTHO05D000454 2.7e-08 62.0 77 44.2
SGA_v2.0_scaffold49G18132 Striga asiatica HOM05D000618 ORTHO05D000454 2.7e-08 62.0 77 45.5
Actinidia33609 Actinidia chinensis HOM05D000618 ORTHO05D000454 4.7e-08 61.2 77 42.9
CSS0013375 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 4.7e-08 61.2 76 40.8
Manes.06G062000 Manihot esculenta HOM05D000618 ORTHO05D000454 4.7e-08 61.2 73 42.5
Phvul.007G036000 Phaseolus vulgaris HOM05D000618 ORTHO05D000454 4.7e-08 61.2 76 47.4
HanXRQChr09g0262401 Helianthus annuus HOM05D000618 ORTHO05D000454 6.1e-08 60.8 77 42.9
Manes.14G135700 Manihot esculenta HOM05D000618 ORTHO05D000454 6.1e-08 60.8 73 41.1
Glyma.20G124800 Glycine max HOM05D000618 ORTHO05D000454 7.9e-08 60.5 97 42.3
Rhsim09G0068500 Rhododendron simsii HOM05D000618 ORTHO05D000454 7.9e-08 60.5 93 37.6
Cpa.g.sc65.110 Carica papaya HOM05D000618 ORTHO05D000454 1.0e-07 60.1 76 42.1
ECA232G0339 Erigeron canadensis HOM05D000618 ORTHO05D000454 1.0e-07 60.1 77 45.5
Glyma.10G265800 Glycine max HOM05D000618 ORTHO05D000454 1.0e-07 60.1 97 42.3
HanXRQChr14g0440431 Helianthus annuus HOM05D000618 ORTHO05D000454 1.0e-07 60.1 75 44.0
Sabra08G0096200 Salix brachista HOM05D000618 ORTHO05D000454 1.0e-07 60.1 76 43.4
vmacro01430 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 1.0e-07 60.1 77 46.8
ATR0326G063 Amborella trichopoda HOM05D000618 ORTHO05D000454 1.4e-07 59.7 77 44.2
Eucgr.G02211 Eucalyptus grandis HOM05D000618 ORTHO05D000454 1.4e-07 59.7 76 44.7
Lalb_Chr21g0308521 Lupinus albus HOM05D000618 ORTHO05D000454 1.4e-07 59.7 76 44.7
Medtr7g082950 Medicago truncatula HOM05D000618 ORTHO05D000454 2.3e-07 58.9 77 41.6
Psat3g096520 Pisum sativum HOM05D000618 ORTHO05D000454 2.3e-07 58.9 72 45.8
CANSAT01G0907 Cannabis sativa HOM05D000618 ORTHO05D000454 3.0e-07 58.5 76 42.1
COL.COLO4_20447 Corchorus olitorius HOM05D000618 ORTHO05D000454 3.0e-07 58.5 76 44.7
Migut.H00257 Erythranthe guttata HOM05D000618 ORTHO05D000454 3.0e-07 58.5 86 41.9
DCAR_026762 Daucus carota HOM05D000618 ORTHO05D000454 3.9e-07 58.2 76 42.1
Oeu004308.2 Olea europaea HOM05D000618 ORTHO05D000454 3.9e-07 58.2 76 43.4
PGR119G1221 Punica granatum HOM05D000618 ORTHO05D000454 3.9e-07 58.2 77 42.9
AUR62014138 Chenopodium quinoa HOM05D000618 ORTHO05D000454 5.1e-07 57.8 76 42.1
Lsat_1_v5_gn_4_155240 Lactuca sativa HOM05D000618 ORTHO05D000454 5.1e-07 57.8 75 45.3
MD13G1028300 Malus domestica HOM05D000618 ORTHO05D000454 5.1e-07 57.8 76 42.1
Peaxi162Scf00119g01526 Petunia axillaris HOM05D000618 ORTHO05D000454 5.1e-07 57.8 77 40.3
Thecc.02G278100 Theobroma cacao HOM05D000618 ORTHO05D000454 5.1e-07 57.8 76 43.4
Prupe.1G321900 Prunus persica HOM05D000618 ORTHO05D000454 6.7e-07 57.4 78 42.3
Ca_11102_v3 Cicer arietinum L. HOM05D000618 ORTHO05D000454 8.8e-07 57.0 97 39.2
VMungo0720G0474 Vigna mungo HOM05D000618 ORTHO05D000454 8.8e-07 57.0 97 41.2
COL.COLO4_27132 Corchorus olitorius HOM05D000618 ORTHO05D000454 1.1e-06 56.6 62 50.0
Lj5g0026978 Lotus japonicus HOM05D000618 ORTHO05D000454 1.1e-06 56.6 76 43.4
Sed0019063 Sechium edule HOM05D000618 ORTHO05D000454 1.1e-06 56.6 78 43.6
Atru.chr1.1731 Acer truncatum HOM05D000618 ORTHO05D000454 1.5e-06 56.2 77 41.6
MSTRG.2192 Avicennia marina HOM05D000618 ORTHO05D000454 1.5e-06 56.2 76 39.5
CAN.G1693.9 Capsicum annuum HOM05D000618 ORTHO05D000454 1.5e-06 56.2 79 38.0
AUR62041245 Chenopodium quinoa HOM05D000618 ORTHO05D000454 1.5e-06 56.2 76 42.1
arahy.Tifrunner.gnm1.ann1.DXKJ1C Arachis hypogaea HOM05D000618 ORTHO05D000454 2.0e-06 55.8 76 43.4
arahy.Tifrunner.gnm1.ann1.QGG2CX Arachis hypogaea HOM05D000618 ORTHO05D000454 2.0e-06 55.8 76 43.4
HanXRQChr08g0212871 Helianthus annuus HOM05D000618 ORTHO05D000454 2.0e-06 55.8 76 36.8
Nitab4.5_0004092g0050 Nicotiana tabacum HOM05D000618 ORTHO05D000454 2.0e-06 55.8 76 39.5
Nitab4.5_0004692g0020 Nicotiana tabacum HOM05D000618 ORTHO05D000454 2.0e-06 55.8 76 39.5
CsaV3_3G017780 Cucumis sativus L. HOM05D000618 ORTHO05D000454 2.6e-06 55.5 78 42.3
Lsat_1_v5_gn_8_42780 Lactuca sativa HOM05D000618 ORTHO05D000454 2.6e-06 55.5 76 35.5
Peaxi162Scf00205g00619 Petunia axillaris HOM05D000618 ORTHO05D000454 2.6e-06 55.5 75 37.3
Medtr1g108490 Medicago truncatula HOM05D000618 ORTHO05D000454 3.3e-06 55.1 76 43.4
PGSC0003DMG400030557 Solanum tuberosum HOM05D000618 ORTHO05D000454 3.3e-06 55.1 78 38.5
HPP92_024098 Vanilla planifolia HOM05D000618 ORTHO05D000454 3.3e-06 55.1 78 44.9
CSS0033385 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 4.4e-06 54.7 86 36.0
MELO3C020316.2 Cucumis melo HOM05D000618 ORTHO05D000454 5.7e-06 54.3 78 39.7
Gohir.A03G123500 Gossypium hirsutum HOM05D000618 ORTHO05D000454 5.7e-06 54.3 76 42.1
PGSC0003DMG400005991 Solanum tuberosum HOM05D000618 ORTHO05D000454 5.7e-06 54.3 75 38.7
Aa31LG2G8630 Aethionema arabicum HOM05D000618 ORTHO05D000454 7.4e-06 53.9 77 42.9
ClCG01G006180 Citrullus lanatus HOM05D000618 ORTHO05D000454 7.4e-06 53.9 76 38.2
BraA02t08195Z Brassica rapa HOM05D000618 ORTHO05D000454 9.7e-06 53.5 75 37.3
Gohir.D02G146100 Gossypium hirsutum HOM05D000618 ORTHO05D000454 9.7e-06 53.5 77 40.3
Gorai.005G163500 Gossypium raimondii HOM05D000618 ORTHO05D000454 9.7e-06 53.5 77 40.3
Hma1.2p1_0114F.1_g055220 Hydrangea macrophylla HOM05D000618 ORTHO05D000454 9.7e-06 53.5 90 36.7
Sopen05g004220 Solanum pennellii HOM05D000618 ORTHO05D000454 9.7e-06 53.5 78 37.2


User provided reference genes

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