Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.7e-112 409.5 218 100.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 3.4e-73 278.9 224 73.2
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 9.3e-71 270.8 223 71.3
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.5e-68 263.5 211 71.1
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.4e-66 256.9 212 72.2
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.8e-61 240.0 201 70.6
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 9.6e-60 234.2 218 67.9
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.4e-58 229.6 212 66.0
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 5.3e-50 201.8 219 60.3
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 6.9e-50 201.4 119 93.3
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.5e-49 200.3 214 57.9
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 4.9e-48 195.3 213 60.1
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 6.0e-46 188.3 221 56.1
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.3e-43 180.6 202 58.4
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.7e-43 179.1 193 58.5
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 8.2e-43 177.9 193 58.5
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 8.2e-43 177.9 220 54.1
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.1e-42 177.6 189 58.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.4e-42 176.4 219 51.6
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 5.3e-42 175.3 193 56.5
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.6e-41 172.9 183 58.5
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 7.6e-41 171.4 226 54.0
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.7e-40 170.2 224 52.2
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 3.2e-39 166.0 218 49.1
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 5.5e-39 165.2 193 54.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.2e-38 164.1 219 50.2
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 4.6e-38 162.2 221 50.2
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 6.1e-38 161.8 223 52.0
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 7.9e-38 161.4 223 50.2
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 7.9e-38 161.4 200 51.5
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.3e-37 160.6 224 52.2
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.8e-37 160.2 219 48.9
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.8e-37 160.2 215 49.8
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.3e-37 159.8 208 53.4
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-37 159.5 213 51.2
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.9e-37 159.1 221 49.3
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.1e-36 157.5 169 59.2
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.9e-36 156.8 207 51.2
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.9e-36 156.8 220 50.0
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 4.3e-36 155.6 214 48.6
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 7.4e-36 154.8 194 51.0
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.6e-35 153.7 201 51.2
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.8e-35 152.1 214 48.1
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 6.3e-35 151.8 214 48.1
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.1e-34 151.0 197 49.7
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.8e-34 150.2 197 49.7
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 6.9e-34 148.3 196 49.5
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.5e-33 147.1 215 50.7
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 3.4e-33 146.0 218 48.2
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.0e-32 144.4 214 48.1
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-32 144.1 215 48.8
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.2e-32 143.3 195 48.2
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.2e-32 143.3 198 50.5
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 3.8e-32 142.5 175 55.4
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 5.0e-32 142.1 188 48.4
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.1e-31 141.0 218 44.5
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.1e-31 141.0 210 48.1
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.1e-31 141.0 208 45.7
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.1e-31 141.0 204 50.5
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.4e-31 140.6 221 49.8
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 3.2e-31 139.4 185 48.6
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.6e-30 137.1 211 48.8
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.7e-30 136.3 187 48.7
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.9e-30 134.8 187 46.0
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.3e-29 133.3 226 46.0
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 5.1e-29 132.1 176 53.4
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 5.1e-29 132.1 213 46.5
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.8e-29 131.3 176 52.3
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.1e-28 131.0 203 44.3
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.1e-28 131.0 190 43.7
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.5e-28 130.6 186 47.3
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.6e-28 129.8 209 44.5
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 5.7e-28 128.6 190 47.9
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 7.4e-28 128.3 201 48.3
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 9.7e-28 127.9 172 51.2
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 2.2e-27 126.7 207 46.9
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 4.8e-27 125.6 196 47.4
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 8.2e-27 124.8 202 46.0
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.1e-26 122.9 166 52.4
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.1e-26 122.9 204 44.6
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 9.1e-26 121.3 214 43.9
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.5e-25 120.6 206 45.6
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 5.9e-25 118.6 212 45.3
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.0e-24 117.9 164 46.3
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.7e-24 117.1 193 45.1
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 2.9e-24 116.3 181 45.3
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.9e-24 116.3 193 43.5
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.9e-23 113.6 181 44.2
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 5.5e-23 112.1 192 44.3
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 5.5e-23 112.1 192 44.3
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 7.2e-23 111.7 186 39.8
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.2e-22 110.9 170 45.3
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 2.1e-22 110.2 214 41.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.7e-22 109.8 215 41.9
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.7e-22 109.8 215 41.9
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 3.6e-22 109.4 192 43.8
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 3.6e-22 109.4 181 44.8
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 6.1e-22 108.6 192 43.8
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 7.9e-22 108.2 179 43.6
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 7.9e-22 108.2 169 46.2
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.0e-21 107.8 195 42.1
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 1.4e-21 107.5 225 37.8
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-21 107.5 185 42.7
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 1.8e-21 107.1 179 44.1
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 3.9e-21 105.9 215 38.6
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 5.2e-21 105.5 177 43.5
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 5.2e-21 105.5 205 39.0
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 6.7e-21 105.1 185 42.2
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 6.7e-21 105.1 82 69.5
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-20 104.4 185 41.6
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.1e-20 104.4 185 41.6
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.1e-20 104.4 185 42.2
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.1e-20 104.4 222 39.6
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.5e-20 104.0 200 40.5
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.5e-20 104.0 215 42.8
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.6e-20 103.2 188 40.4
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 3.3e-20 102.8 140 50.7
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.3e-19 100.9 215 40.0
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.8e-19 99.8 178 43.3
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.8e-19 99.8 217 41.5
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.7e-19 99.4 203 38.9
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.1e-18 97.8 213 38.0
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.1e-18 97.8 141 48.9
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.4e-18 97.4 215 39.5
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-18 97.4 189 41.3
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.8e-18 97.1 200 40.0
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 2.4e-18 96.7 217 39.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 4.1e-18 95.9 188 42.0
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 7.0e-18 95.1 205 40.0
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-17 94.4 189 37.6
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 3.5e-17 92.8 219 35.6
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 3.5e-17 92.8 206 38.3
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 1.5e-15 87.4 181 39.2
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 5.5e-15 85.5 182 37.9
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 9.4e-15 84.7 177 39.0
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 9.4e-15 84.7 193 38.3
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 2.1e-14 83.6 190 40.5
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 3.6e-14 82.8 164 37.8
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 6.1e-14 82.0 186 37.1
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 1.4e-13 80.9 107 51.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 1.8e-13 80.5 177 37.9
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 6.7e-13 78.6 175 37.7
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-12 77.8 157 40.8
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.2e-12 77.8 182 36.8
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.5e-12 77.4 185 35.7
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 5.7e-12 75.5 171 40.4
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 9.7e-12 74.7 150 40.7
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 1.3e-11 74.3 182 38.5
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.8e-11 73.2 170 38.8
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 4.8e-11 72.4 91 53.8
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 6.3e-11 72.0 190 38.4
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 2.4e-10 70.1 132 40.2
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 7.0e-10 68.6 127 41.7
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 1.5e-07 60.8 78 48.7
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 4.2e-07 59.3 63 50.8
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 1.2e-06 57.8 163 33.1
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.7e-06 56.6 174 34.5
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 6.1e-06 55.5 135 34.1
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 8.0e-06 55.1 205 28.8


User provided reference genes

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