Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 3.0e-279 964.5 482 100.0
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 3.0e-279 964.5 482 100.0
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 2.3e-247 858.6 448 96.9
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 4.8e-112 409.1 417 51.8
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 2.6e-102 376.7 397 50.4
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 1.1e-100 371.3 407 49.6
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.1e-100 371.3 398 51.5
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 4.0e-98 362.8 399 49.6
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 1.1e-95 354.8 395 50.1
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 1.6e-94 350.9 406 47.8
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 2.9e-93 346.7 569 38.0
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 8.5e-93 345.1 398 49.2
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 4.2e-92 342.8 442 45.2
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 8.8e-90 335.1 415 45.5
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 1.4e-82 311.2 333 52.0
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 3.5e-78 296.6 376 44.4
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.4e-74 284.6 443 38.8
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 3.1e-74 283.5 405 41.5
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 1.5e-73 281.2 415 40.7
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 2.2e-72 277.3 408 40.7
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 2.2e-72 277.3 297 51.2
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 3.7e-72 276.6 405 39.3
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 4.1e-71 273.1 406 40.4
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 3.5e-70 270.0 404 40.1
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 3.3e-68 263.5 402 38.8
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 4.3e-68 263.1 402 39.8
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.6e-68 262.7 402 39.8
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 7.3e-68 262.3 417 39.3
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 4.7e-67 259.6 404 36.9
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 1.4e-66 258.1 394 40.6
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 1.4e-66 258.1 415 40.0
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 2.3e-66 257.3 361 40.2
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 3.1e-66 256.9 398 36.9
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 2.0e-65 254.2 402 37.6
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 2.6e-65 253.8 392 37.8
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 1.3e-64 251.5 408 38.2
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 3.7e-64 250.0 389 39.3
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 4.9e-64 249.6 396 37.1
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 1.2e-62 245.0 405 36.5
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-62 245.0 397 37.3
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 1.6e-62 244.6 395 38.0
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 2.1e-62 244.2 409 35.7
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 7.8e-62 242.3 418 38.3
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-61 241.5 401 38.7
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 1.7e-61 241.1 444 36.9
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.3e-61 240.7 421 38.0
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 3.9e-61 240.0 387 40.3
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.1e-61 239.6 399 36.6
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 5.1e-61 239.6 398 36.4
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.5e-60 238.0 401 38.4
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.5e-60 238.0 401 38.4
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 1.9e-60 237.7 397 36.8
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 1.2e-59 235.0 399 36.3
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 2.8e-59 233.8 409 34.2
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 8.1e-59 232.3 435 34.3
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 1.8e-58 231.1 405 38.0
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.8e-58 231.1 400 35.0
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 4.0e-58 229.9 426 35.2
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 5.2e-58 229.6 402 33.6
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 2.0e-57 227.6 439 33.0
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 7.6e-57 225.7 397 34.5
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 9.9e-57 225.3 397 34.3
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.7e-56 224.6 419 33.2
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 1.7e-56 224.6 442 33.0
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.9e-56 223.8 398 35.2
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 3.7e-56 223.4 413 37.8
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 3.2e-55 220.3 406 36.5
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 1.6e-54 218.0 430 33.3
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 2.1e-54 217.6 410 34.1
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 6.0e-54 216.1 396 35.4
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.0e-53 215.3 452 30.8
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 1.3e-53 214.9 401 35.9
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 5.1e-53 213.0 391 32.5
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 2.5e-52 210.7 372 34.1
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 3.3e-52 210.3 405 32.1
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 5.6e-52 209.5 400 32.5
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 7.3e-52 209.1 452 30.1
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 1.1e-50 205.3 402 30.6
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.1e-50 205.3 412 34.2
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 1.8e-50 204.5 421 33.5
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.2e-50 203.0 405 32.1
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 5.2e-50 203.0 404 31.9
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.6e-49 200.7 452 30.3
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 8.4e-48 195.7 396 30.8
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.1e-47 195.3 398 31.9
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-46 191.8 416 32.5
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 1.6e-46 191.4 415 30.1
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.6e-46 191.4 429 30.8
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-45 188.3 462 29.4
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 8.7e-45 185.7 324 34.6
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 4.3e-44 183.3 405 30.4
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 5.6e-44 183.0 390 29.7
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 7.3e-44 182.6 159 57.2
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.3e-43 181.8 347 32.6
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.1e-43 181.0 354 33.3
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 2.1e-43 181.0 183 50.8
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 2.8e-43 180.6 331 33.2
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.8e-42 177.9 487 28.5
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 3.1e-42 177.2 389 29.3
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.5e-41 174.9 350 31.1
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 4.4e-41 173.3 349 31.5
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 2.9e-40 170.6 431 31.1
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.2e-39 166.8 404 30.2
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-38 165.2 371 30.2
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 7.9e-38 162.5 324 30.6
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.6e-35 154.8 399 28.3
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 5.3e-34 149.8 168 47.0
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 7.6e-33 146.0 172 45.3
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.7e-32 144.8 336 31.0
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 6.4e-32 142.9 334 30.8
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 5.1e-29 133.3 396 26.8
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 1.5e-28 131.7 157 44.6
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 4.3e-28 130.2 372 28.0
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 1.1e-26 125.6 157 43.9
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-26 125.2 144 41.0
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-26 125.2 162 40.1
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 1.4e-26 125.2 166 41.0
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 1.8e-26 124.8 170 37.1
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 1.8e-26 124.8 170 37.1
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 3.1e-26 124.0 144 40.3
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 5.3e-26 123.2 144 41.0
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 6.9e-26 122.9 179 36.9
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 6.9e-26 122.9 180 37.2
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 2.0e-25 121.3 156 42.3
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 2.6e-25 120.9 163 36.8
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.5e-25 120.2 175 40.6
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.5e-25 120.2 342 31.3
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 5.8e-25 119.8 144 38.9
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 7.6e-25 119.4 155 41.9
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 7.6e-25 119.4 121 48.8
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.0e-24 119.0 154 38.3
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 1.0e-24 119.0 143 39.2
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.8e-24 117.1 154 37.7
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 3.8e-24 117.1 153 39.9
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 3.8e-24 117.1 144 38.2
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 4.9e-24 116.7 157 37.6
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.9e-24 116.7 157 37.6
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 4.9e-24 116.7 154 35.7
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 1.9e-23 114.8 181 35.9
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 3.2e-23 114.0 153 37.9
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.2e-23 113.6 167 36.5
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 1.2e-22 112.1 155 38.1
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 4.6e-22 110.2 155 37.4
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 6.0e-22 109.8 155 39.4
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 6.0e-22 109.8 181 34.3
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 7.9e-22 109.4 127 43.3
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 7.9e-22 109.4 155 38.7
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.0e-21 109.0 159 34.6
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 1.3e-21 108.6 155 38.7
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 1.8e-21 108.2 155 38.7
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 2.3e-21 107.8 163 35.0
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 3.9e-21 107.1 165 38.2
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 3.9e-21 107.1 128 39.1
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 3.3e-20 104.0 112 46.4
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 4.3e-20 103.6 156 34.6
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 5.7e-20 103.2 155 36.8
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 1.3e-19 102.1 111 45.9
Lalb_Chr14g0362571 Lupinus albus HOM05D003575 ORTHO05D003587 1.3e-19 102.1 86 62.8
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 3.7e-19 100.5 101 48.5
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 5.3e-18 96.7 105 44.8
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 2.0e-17 94.7 278 30.6
Oeu041110.1 Olea europaea HOM05D003575 ORTHO05D003587 1.4e-15 88.6 120 42.5
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-15 88.2 158 35.4
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 2.5e-15 87.8 76 53.9
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 7.9e-14 82.8 107 39.3
Zm00001eb264990 Zea mays HOM05D003575 ORTHO05D003587 1.8e-13 81.6 134 31.3
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 8.7e-13 79.3 80 40.0
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 8.7e-13 79.3 141 29.8
Pp3c24_6860 Physcomitrium patens HOM05D003575 ORTHO05D003587 1.5e-12 78.6 155 32.3
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.5e-12 77.8 95 33.7
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 2.5e-12 77.8 160 29.4
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 5.7e-12 76.6 122 37.7
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 9.7e-12 75.9 111 34.2
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 9.7e-12 75.9 188 28.7
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.6e-11 75.1 118 34.7
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 1.8e-10 71.6 105 32.4
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 2.4e-10 71.2 171 28.1
Dinv26594 Davidia involucrata HOM05D000074 ORTHO05D001293 6.9e-10 69.7 75 49.3
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 6.9e-10 69.7 130 33.1
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 1.5e-09 68.6 103 31.1
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 2.0e-09 68.2 165 27.3
Mapoly0072s0063 Marchantia polymorpha HOM05D040683 ORTHO05D003587 3.4e-09 67.4 175 26.9
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 4.5e-09 67.0 136 29.4
MD09G1128900 Malus domestica HOM05D003575 ORTHO05D003587 1.3e-08 65.5 79 43.0
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 2.9e-08 64.3 64 50.0
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 5.5e-07 60.1 58 46.6


User provided reference genes

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