Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-41 170.2 85 100.0
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-29 132.9 84 84.5
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 3.2e-27 124.8 75 82.7
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 7.9e-26 120.2 85 76.5
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.9e-24 115.5 84 75.0
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 2.8e-23 111.7 85 72.9
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 6.2e-23 110.5 85 72.9
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 8.2e-23 110.2 85 72.9
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-21 105.5 85 69.4
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 4.9e-20 100.9 55 89.1
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 5.5e-19 97.4 85 64.7
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.6e-18 95.9 85 63.5
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.6e-18 95.9 85 64.7
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.1e-18 95.5 85 63.5
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.7e-18 95.1 85 62.4
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 2.7e-18 95.1 85 62.4
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 3.5e-18 94.7 85 62.4
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 6.0e-18 94.0 85 62.4
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 6.0e-18 94.0 85 62.4
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 6.0e-18 94.0 85 62.4
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 7.9e-18 93.6 85 62.4
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.9e-18 93.6 85 62.4
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.0e-17 93.2 85 62.4
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 1.0e-17 93.2 85 62.4
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.0e-17 93.2 85 62.4
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.0e-17 93.2 85 60.0
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.0e-17 93.2 85 62.4
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.0e-17 93.2 85 61.2
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.3e-17 92.8 85 62.4
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.8e-17 92.4 85 62.4
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.8e-17 92.4 85 61.2
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.3e-17 92.0 85 61.2
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 2.3e-17 92.0 85 61.2
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 2.3e-17 92.0 85 60.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 3.0e-17 91.7 85 61.2
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.9e-17 91.3 85 61.2
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.9e-17 91.3 85 58.8
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 5.1e-17 90.9 85 60.0
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 6.7e-17 90.5 85 58.8
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 6.7e-17 90.5 85 58.8
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.1e-16 89.7 85 60.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.1e-16 89.7 85 58.8
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.5e-16 89.4 85 60.0
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.5e-16 89.4 85 58.8
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.5e-16 89.4 85 60.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.9e-16 89.0 83 59.0
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.9e-16 89.0 83 59.0
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.9e-16 89.0 83 60.2
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.3e-16 87.8 85 58.8
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.3e-16 87.8 85 58.8
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 5.7e-16 87.4 85 56.5
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 5.7e-16 87.4 85 58.8
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.7e-16 87.4 85 58.8
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.7e-16 87.4 85 58.8
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.7e-16 87.4 85 58.8
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.7e-16 87.4 85 58.8
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.4e-16 87.0 85 58.8
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 7.4e-16 87.0 85 57.6
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 9.7e-16 86.7 85 58.8
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 9.7e-16 86.7 85 58.8
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 1.3e-15 86.3 85 56.5
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-15 86.3 85 57.6
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.3e-15 86.3 85 57.6
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.3e-15 86.3 85 57.6
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.3e-15 86.3 85 60.0
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.6e-15 85.9 85 55.3
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.6e-15 85.9 85 58.8
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.2e-15 85.5 85 57.6
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.2e-15 85.5 85 56.5
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.2e-15 85.5 85 54.1
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 2.2e-15 85.5 85 57.6
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 2.8e-15 85.1 85 56.5
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 2.8e-15 85.1 85 56.5
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 2.8e-15 85.1 85 56.5
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.8e-15 85.1 85 56.5
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 2.8e-15 85.1 85 56.5
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 2.8e-15 85.1 85 56.5
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.8e-15 85.1 85 56.5
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.8e-15 85.1 85 57.6
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.8e-15 85.1 85 60.0
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.7e-15 84.7 78 57.7
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 4.8e-15 84.3 85 54.1
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.8e-15 84.3 85 54.1
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 4.8e-15 84.3 84 54.8
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.8e-15 84.3 82 56.1
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 4.8e-15 84.3 83 57.8
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 6.3e-15 84.0 85 55.3
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 6.3e-15 84.0 85 55.3
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 6.3e-15 84.0 85 55.3
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 6.3e-15 84.0 85 55.3
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 6.3e-15 84.0 85 58.8
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 8.2e-15 83.6 80 56.2
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 8.2e-15 83.6 85 54.1
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 8.2e-15 83.6 85 56.5
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 8.2e-15 83.6 85 55.3
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.1e-14 83.2 85 57.6
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 1.1e-14 83.2 83 59.0
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.4e-14 82.8 83 55.4
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.4e-14 82.8 85 57.6
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.8e-14 82.4 85 55.3
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.4e-14 82.0 85 56.5
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.4e-14 82.0 85 56.5
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 3.1e-14 81.6 85 57.6
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 3.1e-14 81.6 85 57.6
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 3.1e-14 81.6 85 57.6
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.1e-14 81.3 85 56.5
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 5.3e-14 80.9 85 52.9
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 5.3e-14 80.9 85 56.5
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 6.9e-14 80.5 85 56.5
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 6.9e-14 80.5 85 55.3
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 6.9e-14 80.5 85 55.3
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 9.0e-14 80.1 85 56.5
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.5e-13 79.3 85 56.5
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.5e-13 79.3 85 52.9
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.5e-13 79.3 83 55.4
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 3.4e-13 78.2 83 53.0
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 3.4e-13 78.2 85 51.8
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 3.4e-13 78.2 85 51.8
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 7.7e-13 77.0 79 51.9
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.3e-12 76.3 85 54.1
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.3e-12 76.3 71 57.7
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.7e-12 75.9 83 51.8
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-12 75.1 84 53.6
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 5.0e-12 74.3 85 47.1
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 5.0e-12 74.3 85 49.4
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 8.5e-12 73.6 85 49.4
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.1e-11 73.2 85 47.1
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.4e-11 72.8 83 49.4
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.2e-11 71.6 71 54.9
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 5.5e-11 70.9 85 48.2
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 9.4e-11 70.1 71 52.1
arahy.Tifrunner.gnm1.ann1.LX64UG Arachis hypogaea HOM05D000103 ORTHO05D084991 1.2e-10 69.7 42 83.3
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 7.9e-10 67.0 71 53.5
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.4e-09 66.2 72 51.4
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-09 65.9 39 84.6
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 3.0e-09 65.1 71 54.9
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 3.9e-09 64.7 71 50.7
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 5.1e-09 64.3 85 45.9
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.7e-09 63.9 39 82.1
arahy.Tifrunner.gnm1.ann1.PD5CRZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-08 62.8 64 59.4
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 4.3e-08 61.2 69 47.8
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 6.3e-07 57.4 85 40.0
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.1e-06 56.6 39 66.7
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.8e-06 55.8 69 47.8
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 2.4e-06 55.5 85 41.2


User provided reference genes

Program Settings