Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F0S3GF Arachis hypogaea HOM05D000533 ORTHO05D002807 3.6e-100 368.2 184 100.0
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 3.5e-71 271.9 139 97.1
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.5e-71 271.9 139 97.1
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.5e-71 271.9 139 97.1
arahy.Tifrunner.gnm1.ann1.RBM67I Arachis hypogaea HOM05D000533 ORTHO05D002807 5.1e-62 241.5 128 100.0
arahy.Tifrunner.gnm1.ann1.U57TMC Arachis hypogaea HOM05D000533 ORTHO05D002807 1.3e-60 236.9 128 98.4
arahy.Tifrunner.gnm1.ann1.CXW88U Arachis hypogaea HOM05D000533 ORTHO05D002807 5.3e-59 231.5 129 95.3
Lalb_Chr07g0191801 Lupinus albus HOM05D000533 ORTHO05D002807 9.9e-58 227.3 128 93.8
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 9.3e-56 220.7 128 91.4
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 9.3e-56 220.7 128 91.4
EL10Ac1g02291 Beta vulgaris HOM05D000533 ORTHO05D002807 1.0e-54 217.2 128 89.8
EL10As15g24098 Beta vulgaris HOM05D000533 ORTHO05D002807 1.0e-54 217.2 128 89.8
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 5.1e-54 214.9 128 88.3
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 3.3e-53 212.2 128 88.3
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 3.3e-53 212.2 128 88.3
MELO3C000179.2 Cucumis melo HOM05D000533 ORTHO05D002807 4.8e-52 208.4 130 84.6
Gohir.1Z049702 Gossypium hirsutum HOM05D000533 ORTHO05D002807 8.1e-52 207.6 128 85.9
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 5.3e-51 204.9 128 84.4
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 5.3e-51 204.9 128 84.4
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 5.3e-51 204.9 128 84.4
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 5.3e-51 204.9 128 85.2
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 9.0e-51 204.1 128 83.6
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 9.0e-51 204.1 128 83.6
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 9.0e-51 204.1 128 83.6
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 9.0e-51 204.1 128 83.6
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 1.5e-50 203.4 128 85.9
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 1.5e-50 203.4 128 84.4
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 2.6e-50 202.6 128 83.6
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 3.4e-50 202.2 128 83.6
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 9.9e-50 200.7 128 85.2
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 9.9e-50 200.7 128 85.9
BolSC29t60509H Brassica oleracea HOM05D000533 ORTHO05D002807 9.9e-50 200.7 128 85.2
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 9.9e-50 200.7 128 85.2
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 9.9e-50 200.7 128 85.2
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 9.9e-50 200.7 128 85.2
BolSC49t61146H Brassica oleracea HOM05D000533 ORTHO05D002807 9.9e-50 200.7 128 85.2
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 9.9e-50 200.7 128 85.2
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 9.9e-50 200.7 128 85.2
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 9.9e-50 200.7 114 89.5
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 9.9e-50 200.7 114 89.5
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 1.3e-49 200.3 128 85.2
Migut.D01249 Erythranthe guttata HOM05D000533 ORTHO05D002807 1.3e-49 200.3 128 81.2
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 1.3e-49 200.3 128 85.2
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 1.1e-48 197.2 128 83.6
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 3.2e-48 195.7 114 86.8
BolSC29t60549H Brassica oleracea HOM05D000533 ORTHO05D002807 4.2e-48 195.3 128 82.8
Solyc11g021230.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 7.1e-48 194.5 127 81.1
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 9.3e-48 194.1 120 85.0
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 6.0e-47 191.4 128 79.7
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 9.6e-45 184.1 114 84.2
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 1.3e-44 183.7 114 83.3
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 1.3e-44 183.7 114 83.3
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-44 183.3 114 84.2
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-44 183.3 114 84.2
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-44 183.3 114 84.2
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-44 183.3 114 84.2
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.6e-44 183.3 114 84.2
Solyc02g080275.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.8e-44 182.6 114 82.5
BolC2t10599H Brassica oleracea HOM05D000533 ORTHO05D002807 4.0e-43 178.7 114 84.2
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 4.0e-43 178.7 114 84.2
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 8.4e-41 171.0 128 76.6
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 2.8e-36 156.0 98 84.7
Nitab4.5_0001313g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 9.0e-35 151.0 105 76.2
Nitab4.5_0001783g0140 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.0e-34 149.8 111 73.0
Lalb_Chr09g0335431 Lupinus albus HOM05D000533 ORTHO05D002807 1.7e-33 146.7 102 76.5
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 8.4e-33 144.4 83 89.2
BraSC58t46464Z Brassica rapa HOM05D000533 ORTHO05D002807 1.1e-32 144.1 134 64.9
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-31 140.6 114 70.2
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.0e-30 136.0 114 66.7
Glyma.18G155550 Glycine max HOM05D000533 ORTHO05D002807 2.5e-29 132.9 102 75.5
Lsat_1_v5_gn_4_118121 Lactuca sativa HOM05D000533 ORTHO05D002807 1.3e-28 130.6 114 64.0
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 3.1e-27 125.9 79 83.5
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 7.7e-26 121.3 105 65.7
Duzib093G2216 Durio zibethinus HOM05D000533 ORTHO05D002807 1.0e-25 120.9 114 61.4
Gohir.D11G334101 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.2e-23 114.0 70 82.9
Gohir.D05G308833 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.1e-23 113.2 70 82.9
RcHm_v2.0_CPg0502741 Rosa chinensis HOM05D000533 ORTHO05D002807 4.6e-23 112.1 64 90.6
FAN01G0230 Fragaria x ananassa HOM05D000533 ORTHO05D002807 1.4e-22 110.5 72 79.2
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 3.0e-22 109.4 122 56.6
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 3.0e-22 109.4 103 65.0
Eucgr.B03250 Eucalyptus grandis HOM05D000533 ORTHO05D002807 2.0e-21 106.7 61 88.5
Medtr4g451555 Medicago truncatula HOM05D000533 ORTHO05D002807 3.3e-21 105.9 59 91.5
Nn1g07318 Nelumbo nucifera HOM05D000533 ORTHO05D002807 5.7e-21 105.1 64 84.4
Nitab4.5_0017884g0010 Nicotiana tabacum HOM05D000533 ORTHO05D002807 9.7e-21 104.4 85 65.9
Gohir.A10G063750 Gossypium hirsutum HOM05D000533 ORTHO05D002807 3.7e-20 102.4 59 89.8
Lsat_1_v5_gn_5_174020 Lactuca sativa HOM05D000533 ORTHO05D002807 1.0e-17 94.4 65 72.3
Nitab4.5_0001783g0070 Nicotiana tabacum HOM05D000216 ORTHO05D002807 1.3e-17 94.0 70 71.4
TPR.G31189 Trifolium pratense HOM05D000533 ORTHO05D002807 1.1e-16 90.9 53 84.9
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 1.9e-16 90.1 133 51.1
Solyc11g050760.2 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.2e-16 89.0 61 73.8
COL.COLO4_02137 Corchorus olitorius HOM05D000533 ORTHO05D002807 1.4e-14 84.0 120 43.3
Solyc02g011790.2 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.3e-14 83.2 104 51.9
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 8.8e-14 81.3 55 83.6
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 8.8e-14 81.3 55 83.6
Lsat_1_v5_gn_5_174040 Lactuca sativa HOM05D000533 ORTHO05D006151 1.7e-12 77.0 77 55.8
Lsat_1_v5_gn_8_62921 Lactuca sativa HOM05D000533 ORTHO05D002807 2.8e-12 76.3 45 86.7
Nn1g00560 Nelumbo nucifera HOM05D000533 ORTHO05D002807 7.7e-10 68.2 36 94.4
BraSC138t45532Z Brassica rapa HOM05D000533 ORTHO05D002807 2.2e-09 66.6 89 50.6
CsaV3_1G022940 Cucumis sativus L. HOM05D000533 ORTHO05D002807 2.2e-09 66.6 34 97.1
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 3.2e-08 62.8 33 97.0
Psat1g104920 Pisum sativum HOM05D000533 ORTHO05D002807 4.7e-07 58.9 29 96.6


User provided reference genes

Program Settings