Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 6.7e-257 890.2 451 100.0
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 3.4e-237 824.7 451 93.8
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 1.9e-203 712.6 433 82.2
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 1.2e-202 709.9 432 82.2
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 8.9e-201 703.7 433 81.3
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 5.7e-200 701.0 433 80.4
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 2.8e-199 698.7 430 82.1
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.8e-198 696.0 438 80.8
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 3.2e-190 668.7 432 76.9
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 4.6e-189 664.8 432 76.6
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 6.6e-188 661.0 433 75.1
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 3.7e-183 645.2 432 74.5
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 4.9e-183 644.8 433 73.9
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 4.9e-183 644.8 432 75.2
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 4.1e-182 641.7 430 73.3
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 7.0e-182 641.0 431 73.1
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 3.5e-181 638.6 430 74.2
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 4.6e-181 638.3 432 73.6
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 6.0e-181 637.9 431 73.8
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 6.0e-181 637.9 440 73.0
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 1.0e-180 637.1 432 73.1
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 1.0e-180 637.1 438 72.8
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 1.7e-180 636.3 443 70.9
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 1.1e-179 633.6 431 73.8
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.5e-179 633.3 432 73.4
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 9.5e-179 630.6 432 72.5
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 2.1e-178 629.4 432 72.2
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 3.6e-178 628.6 514 63.6
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 1.8e-177 626.3 430 71.9
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 2.6e-176 622.5 432 71.8
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 5.8e-176 621.3 432 71.8
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 2.2e-175 619.4 432 71.3
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 1.1e-174 617.1 430 70.9
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 1.1e-174 617.1 430 69.5
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 3.2e-174 615.5 432 70.4
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 7.1e-174 614.4 430 69.5
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 1.5e-171 606.7 430 70.2
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 2.8e-170 602.4 434 71.0
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 3.6e-170 602.1 432 69.7
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 6.2e-170 601.3 449 65.9
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 1.1e-169 600.5 432 68.5
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 1.8e-169 599.7 489 63.2
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 3.1e-169 599.0 432 67.6
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 3.1e-169 599.0 387 77.3
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 5.2e-169 598.2 449 65.7
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 5.8e-168 594.7 427 68.4
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 7.6e-168 594.3 430 70.7
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 1.1e-166 590.5 430 67.7
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 9.2e-166 587.4 432 67.1
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 9.2e-166 587.4 434 67.5
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 6.0e-165 584.7 428 68.0
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 7.8e-165 584.3 479 63.0
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.7e-164 583.2 432 69.0
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 2.3e-164 582.8 430 66.3
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.3e-164 582.8 432 68.8
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 9.6e-163 577.4 429 67.4
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 7.6e-160 567.8 385 73.2
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 1.7e-159 566.6 433 64.0
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 1.4e-158 563.5 392 71.7
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 9.3e-158 560.8 449 62.1
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 6.6e-156 554.7 431 66.4
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.3e-155 551.2 409 66.5
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-153 547.4 414 66.7
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 5.3e-153 545.0 448 60.5
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 4.3e-147 525.4 432 61.3
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 1.8e-145 520.0 431 62.6
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 6.9e-145 518.1 372 69.4
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 7.1e-142 508.1 460 56.7
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 4.6e-141 505.4 367 66.8
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 4.6e-141 505.4 346 72.8
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 4.3e-139 498.8 364 69.0
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 7.4e-139 498.0 366 68.3
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 4.8e-138 495.4 486 56.4
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 4.0e-137 492.3 449 56.6
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.0e-116 424.5 274 76.3
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 2.3e-116 423.3 420 52.4
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 4.4e-115 419.1 443 48.8
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 9.7e-115 417.9 427 50.1
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.1e-113 414.5 288 70.8
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 1.4e-113 414.1 270 73.3
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.5e-112 410.6 306 67.3
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 1.4e-110 404.1 271 71.2
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.7e-107 392.1 438 45.9
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 1.4e-105 387.5 438 47.5
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.5e-99 367.5 431 44.8
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 3.5e-96 356.3 432 44.0
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 1.8e-92 344.0 272 61.8
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 5.7e-91 339.0 302 58.3
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 6.3e-90 335.5 311 55.0
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.7e-87 327.4 241 68.5
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 4.0e-84 316.2 469 39.7
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 4.0e-84 316.2 561 36.4
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 6.8e-84 315.5 423 41.6
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.5e-83 314.3 275 57.1
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 1.3e-82 311.2 443 39.5
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.2e-80 304.7 437 38.4
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.6e-78 295.8 438 37.0
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.6e-77 294.3 447 37.4
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 6.8e-76 288.9 205 69.8
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 3.4e-75 286.6 443 36.8
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.4e-73 281.2 190 73.2
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.6e-72 276.2 442 37.8
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.0e-59 234.2 447 32.9
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 8.3e-58 228.8 144 74.3
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 8.3e-58 228.8 201 61.2
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 1.9e-57 227.6 387 35.1
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 4.6e-56 223.0 158 69.0
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-54 218.4 374 35.8
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 4.4e-51 206.5 410 32.4
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 4.9e-50 203.0 442 31.9
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 3.9e-47 193.4 118 80.5
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.5e-43 181.4 328 33.8
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 1.7e-42 177.9 104 84.6
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 1.4e-41 174.9 403 31.0
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 3.2e-41 173.7 221 48.4
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 5.4e-41 172.9 282 39.0
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.6e-37 160.2 112 72.3
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.6e-37 160.2 125 61.6
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 9.0e-36 155.6 98 77.6
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 1.2e-35 155.2 98 77.6
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.1e-33 148.7 135 51.1
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.4e-33 147.5 338 31.1
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.8e-31 141.4 127 52.0
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 8.7e-31 139.0 182 41.8
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 1.5e-30 138.3 85 81.2
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.4e-28 131.0 218 37.2
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.4e-26 122.5 289 29.4
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 1.3e-23 115.2 76 75.0
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.3e-23 115.2 142 43.0
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 5.1e-23 113.2 55 92.7
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-22 112.1 227 31.7
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.1e-20 104.0 170 37.1
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.2e-17 93.6 77 51.9
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.5e-16 90.5 104 38.5
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.8e-15 88.2 80 51.2
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 3.4e-11 73.9 267 25.5
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.4e-09 68.6 53 62.3
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 6.1e-08 63.2 45 73.3
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 3.9e-07 60.5 45 66.7
MBI05_g15354_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D022880 6.7e-07 59.7 54 59.3
MBI10_g06898_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D006523 6.7e-07 59.7 76 44.7
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 8.8e-07 59.3 47 53.2
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.5e-06 58.5 45 57.8


User provided reference genes

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