Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 0.0e+00 1627.8 858 100.0
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 1.4e-247 860.1 860 62.6
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.6e-238 830.1 854 60.9
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 4.5e-238 828.6 861 60.9
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 1.0e-237 827.4 860 59.4
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.2e-235 820.5 457 95.4
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 2.6e-233 812.8 841 59.8
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 1.8e-231 806.6 842 59.9
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 7.5e-225 784.6 849 59.6
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 7.3e-212 741.5 864 55.7
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 9.8e-209 731.1 850 56.1
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 9.2e-207 724.5 850 56.2
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 7.8e-190 668.3 855 52.6
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.9e-143 514.2 838 45.7
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 3.6e-142 510.0 815 45.4
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 9.4e-135 485.3 816 44.6
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 2.2e-128 464.2 837 43.4
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 9.8e-124 448.7 844 40.6
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 9.8e-124 448.7 856 40.4
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.1e-122 445.3 854 40.3
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.6e-116 424.1 857 37.9
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.1e-114 418.7 832 41.0
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 4.5e-113 413.3 852 39.4
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.3e-112 411.8 863 37.2
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 3.3e-111 407.1 885 37.7
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 2.1e-110 404.4 863 39.3
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 2.2e-107 394.4 899 36.2
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 1.1e-106 392.1 884 36.9
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 1.6e-105 388.3 889 36.7
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 4.3e-103 380.2 891 36.6
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.2e-102 378.6 840 37.4
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 4.4e-100 370.2 825 37.7
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 2.2e-99 367.9 870 37.1
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 2.9e-99 367.5 900 35.1
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 8.3e-99 365.9 897 36.5
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.4e-98 365.2 890 35.6
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.4e-98 365.2 891 36.5
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.9e-98 364.8 891 35.9
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 1.6e-97 361.7 921 34.1
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.9e-95 354.8 895 34.9
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.9e-91 340.9 907 32.5
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 3.7e-91 340.5 889 34.8
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.5e-89 334.0 908 32.7
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 4.6e-89 333.6 912 33.2
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.1e-88 330.1 901 33.2
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 7.3e-87 326.2 957 32.6
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.8e-86 324.3 894 33.1
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 3.6e-86 323.9 904 34.2
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 8.1e-86 322.8 878 32.8
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 1.7e-83 315.1 702 37.2
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.4e-77 294.7 820 33.0
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.8e-76 290.0 820 32.6
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.9e-75 287.7 917 30.9
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 2.4e-74 284.6 896 30.2
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.2e-73 282.3 592 38.9
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 3.5e-73 280.8 881 31.1
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.8e-70 271.2 949 29.9
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.1e-69 269.2 1017 28.7
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 4.0e-69 267.3 839 31.9
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.0e-68 265.0 1019 28.8
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 2.6e-68 264.6 841 30.2
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 4.5e-68 263.8 904 31.0
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.9e-67 261.2 967 29.1
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 6.4e-67 260.0 949 28.6
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.0e-64 252.7 840 31.1
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 1.0e-64 252.7 862 31.3
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 1.1e-63 249.2 837 30.1
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 2.8e-62 244.6 948 30.2
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 8.1e-62 243.0 889 28.8
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 2.4e-61 241.5 848 29.7
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 4.0e-61 240.7 900 28.9
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 1.7e-59 235.3 879 29.0
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 5.5e-58 230.3 961 29.3
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 2.1e-57 228.4 853 29.9
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 3.3e-55 221.1 809 28.8
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 8.2e-54 216.5 339 45.1
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 6.9e-53 213.4 615 32.5
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 2.0e-52 211.8 864 30.4
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 3.4e-52 211.1 897 29.4
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 4.5e-52 210.7 899 28.4
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.3e-51 209.1 873 28.8
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 3.2e-50 204.5 858 27.9
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 3.2e-50 204.5 392 39.3
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 5.5e-50 203.8 911 28.2
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.0e-48 198.0 864 27.9
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 5.7e-47 193.7 854 27.3
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 2.8e-46 191.4 688 30.5
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 1.8e-45 188.7 827 27.4
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 9.0e-45 186.4 816 28.1
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 4.5e-44 184.1 834 27.5
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.0e-43 183.0 888 27.3
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.6e-41 175.6 892 27.1
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 2.3e-40 171.8 821 27.3
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 3.9e-40 171.0 735 27.3
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 6.7e-40 170.2 528 31.6
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.5e-39 169.1 559 29.3
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 5.7e-39 167.2 805 26.1
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 9.7e-39 166.4 917 26.5
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 2.8e-38 164.9 859 26.8
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 1.4e-37 162.5 834 27.1
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 6.9e-37 160.2 850 25.9
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 7.7e-36 156.8 808 28.5
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 1.0e-35 156.4 808 28.5
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 2.2e-35 155.2 878 27.3
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.9e-34 152.1 930 24.8
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 2.5e-34 151.8 985 25.0
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 5.5e-34 150.6 615 29.6
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 3.6e-33 147.9 825 27.0
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 3.6e-33 147.9 825 26.9
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 1.0e-32 146.4 825 26.7
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 6.7e-32 143.7 603 28.5
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 8.8e-32 143.3 148 53.4
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 8.8e-32 143.3 781 26.8
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 1.1e-31 142.9 820 27.2
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 7.4e-31 140.2 824 26.7
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 7.4e-31 140.2 824 26.7
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 1.3e-30 139.4 825 26.3
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 2.8e-30 138.3 720 27.5
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 5.9e-28 130.6 822 25.8
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 1.3e-27 129.4 544 27.8
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.7e-27 129.0 155 46.5
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 3.8e-27 127.9 192 40.6
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 1.4e-26 125.9 827 26.6
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.0e-24 119.8 235 35.7
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 5.2e-24 117.5 318 35.8
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.1e-21 107.8 404 31.4
Lalb_Chr16g0388151 Lupinus albus HOM05D005593 ORTHO05D006515 1.6e-20 105.9 218 41.3
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 9.4e-18 96.7 319 31.7
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 4.7e-17 94.4 933 23.0
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 8.0e-17 93.6 207 34.8
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 6.7e-16 90.5 718 23.7
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 7.0e-13 80.5 810 23.5
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.2e-12 79.7 217 29.5
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.0e-12 79.0 836 23.2
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 3.5e-12 78.2 847 23.0
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 2.2e-11 75.5 175 31.4
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 5.0e-11 74.3 903 21.6
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 8.5e-11 73.6 55 65.5
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.1e-10 73.2 780 23.2
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 2.5e-10 72.0 830 22.8
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 3.2e-10 71.6 841 22.8
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 4.2e-10 71.2 171 31.6
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 5.5e-10 70.9 834 22.4
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 5.5e-10 70.9 932 22.5
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 1.6e-09 69.3 891 22.8
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 2.1e-09 68.9 753 22.7
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 3.6e-09 68.2 873 21.6
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 4.7e-09 67.8 225 29.8
HPP92_023926 Vanilla planifolia HOM05D005593 ORTHO05D006515 6.1e-09 67.4 128 35.9
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.0e-09 67.0 921 21.1
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 1.0e-08 66.6 798 21.9
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 1.8e-08 65.9 228 29.8
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.3e-08 65.5 956 21.0
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 3.0e-08 65.1 925 21.2
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 4.0e-08 64.7 173 30.6
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 5.2e-08 64.3 869 21.4
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 5.2e-08 64.3 877 21.9
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 6.8e-08 63.9 804 21.3
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 1.2e-07 63.2 199 30.2
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.5e-07 62.8 956 20.9
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.5e-07 62.8 439 23.9
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.0e-07 62.4 191 33.0
Zm00001eb339200 Zea mays HOM05D042755 ORTHO05D006515 3.4e-07 61.6 746 22.1
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 5.7e-07 60.8 276 27.2
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 1.3e-06 59.7 224 26.8
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.7e-06 59.3 913 21.8
SEGI_09114 Sequoiadendron giganteum HOM05D006788 ORTHO05D008265 2.8e-06 58.5 961 21.3
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 3.7e-06 58.2 200 30.0
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 3.7e-06 58.2 335 25.1
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 4.8e-06 57.8 752 21.1
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 6.3e-06 57.4 889 21.1
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 6.3e-06 57.4 194 32.5
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 8.3e-06 57.0 986 21.4
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 8.3e-06 57.0 412 24.0


User provided reference genes

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