Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 8.3e-177 623.6 320 100.0
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.9e-109 399.8 347 66.9
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 3.5e-66 256.1 386 46.1
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.0e-62 242.7 371 42.9
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 9.8e-61 238.0 384 42.4
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 6.3e-60 235.3 371 42.6
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.7e-57 227.3 243 56.4
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 1.7e-57 227.3 377 42.4
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 6.5e-57 225.3 239 55.6
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 8.6e-57 224.9 243 56.0
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 2.8e-55 219.9 238 53.8
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.2e-53 214.5 246 53.7
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.3e-49 201.1 244 51.2
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 8.6e-49 198.4 244 51.2
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 7.3e-48 195.3 395 36.7
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 3.6e-47 193.0 215 50.7
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 4.7e-47 192.6 215 50.7
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.4e-46 191.0 249 49.4
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.2e-45 188.0 247 48.6
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.5e-45 187.6 224 50.0
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.5e-45 187.6 224 50.0
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.5e-45 187.6 245 49.0
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 9.8e-45 184.9 250 44.4
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.2e-44 183.7 388 36.6
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 4.9e-44 182.6 230 48.7
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.4e-43 181.0 246 48.4
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.4e-43 181.0 224 47.3
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 4.1e-43 179.5 282 42.6
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 5.4e-43 179.1 229 46.7
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 7.0e-43 178.7 246 45.5
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.6e-42 177.6 230 48.3
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.3e-41 174.5 240 45.4
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 9.5e-40 168.3 236 45.3
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.2e-39 167.9 226 44.2
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.1e-39 167.2 272 40.1
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 6.2e-39 165.6 229 43.7
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 6.2e-39 165.6 225 43.1
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 4.0e-38 162.9 225 44.0
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 8.9e-38 161.8 228 44.7
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.5e-37 161.0 223 43.0
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.0e-37 160.6 227 44.9
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 3.4e-37 159.8 127 68.5
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 3.4e-37 159.8 228 43.9
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 3.4e-37 159.8 225 44.4
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 5.8e-37 159.1 221 44.8
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.8e-37 159.1 221 44.8
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 9.8e-37 158.3 401 32.9
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 9.8e-37 158.3 227 42.3
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.3e-36 157.9 218 45.0
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.2e-36 157.1 221 44.8
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 2.2e-36 157.1 227 43.6
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.7e-36 156.4 221 43.4
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 6.4e-36 155.6 224 44.2
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.3e-36 155.2 221 43.9
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.4e-35 154.5 223 44.8
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.4e-35 153.7 228 41.7
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 2.4e-35 153.7 229 41.5
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.4e-35 153.7 234 41.9
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 3.2e-35 153.3 226 40.3
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 5.4e-35 152.5 225 43.1
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.2e-35 151.8 234 41.9
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.2e-34 151.4 332 38.0
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.0e-34 150.6 234 41.5
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 3.5e-34 149.8 231 40.7
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 4.6e-34 149.4 215 41.4
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.3e-33 147.9 228 39.9
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.7e-33 147.5 216 39.4
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 3.9e-33 146.4 225 40.4
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 3.9e-33 146.4 224 41.5
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 6.6e-33 145.6 221 42.5
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 6.6e-33 145.6 228 43.0
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.1e-32 144.8 231 41.6
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 3.3e-32 143.3 227 39.6
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 4.3e-32 142.9 227 39.6
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 4.3e-32 142.9 283 35.7
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 7.3e-32 142.1 243 38.7
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 7.3e-32 142.1 226 41.2
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.6e-31 141.0 226 41.2
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 2.8e-31 140.2 272 35.3
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.6e-31 139.8 229 41.5
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 4.7e-31 139.4 273 34.8
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 8.1e-31 138.7 225 39.1
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 3.1e-30 136.7 222 39.2
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 3.1e-30 136.7 159 48.4
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.0e-29 134.0 221 38.5
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 3.4e-29 133.3 229 37.6
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.3e-28 131.3 133 51.9
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.7e-28 131.0 215 39.1
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 2.9e-28 130.2 204 38.7
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 8.3e-28 128.6 218 41.3
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.9e-27 127.5 224 37.5
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 3.2e-27 126.7 224 37.9
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.2e-26 124.8 224 36.6
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.5e-26 123.2 215 37.7
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 7.8e-26 122.1 204 40.2
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 2.3e-25 120.6 221 34.8
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 6.6e-25 119.0 199 38.2
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 8.6e-25 118.6 223 37.7
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.5e-24 117.9 64 92.2
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.9e-24 117.5 225 32.4
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.9e-24 117.5 208 37.0
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 3.3e-24 116.7 215 34.0
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.2e-23 114.8 185 39.5
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.6e-23 114.4 242 35.1
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.8e-23 113.6 214 36.9
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.8e-23 113.6 215 33.5
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 4.7e-23 112.8 207 37.2
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 8.1e-23 112.1 214 36.9
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.1e-22 111.7 215 33.0
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.4e-22 110.5 207 37.7
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 5.2e-22 109.4 159 40.3
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 5.2e-22 109.4 208 37.0
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 8.9e-22 108.6 222 34.7
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 8.9e-22 108.6 214 35.0
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.2e-21 108.2 215 34.9
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.2e-21 108.2 221 34.4
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 2.6e-21 107.1 214 34.6
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.4e-21 106.7 215 34.4
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 7.6e-21 105.5 221 33.0
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.7e-20 104.4 219 34.2
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 2.2e-20 104.0 164 40.2
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.4e-19 101.3 257 33.9
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 5.4e-19 99.4 220 33.6
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 9.2e-19 98.6 229 33.2
arahy.Tifrunner.gnm1.ann1.Z8WERX Arachis hypogaea HOM05D004053 ORTHO05D005065 1.6e-18 97.8 59 83.1
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.5e-18 96.7 234 33.3
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.3e-17 94.0 217 31.3
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 8.7e-17 92.0 219 31.1
arahy.Tifrunner.gnm1.ann1.QFAY72 Arachis hypogaea HOM05D004053 ORTHO05D005065 7.3e-16 89.0 59 79.7
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.6e-15 87.8 133 40.6
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 1.4e-14 84.7 228 32.9
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 3.1e-14 83.6 67 65.7
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 4.0e-14 83.2 216 31.0
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 9.0e-14 82.0 164 35.4
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 2.0e-13 80.9 153 38.6
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.4e-13 80.1 219 30.6
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.4e-11 74.7 45 82.2
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 2.4e-11 73.9 118 38.1
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 2.4e-11 73.9 118 38.1
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 2.4e-11 73.9 118 38.1
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 3.2e-11 73.6 118 38.1
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 3.2e-11 73.6 118 38.1
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 4.2e-11 73.2 209 28.2
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 2.7e-10 70.5 132 35.6
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 6.6e-09 65.9 62 46.8
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 2.5e-08 63.9 60 56.7
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 6.2e-07 59.3 159 28.3
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 4.0e-06 56.6 59 45.8
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 4.0e-06 56.6 59 45.8
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 4.0e-06 56.6 59 45.8
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 4.0e-06 56.6 159 28.9
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 6.9e-06 55.8 49 51.0


User provided reference genes

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