Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 1.2e-109 399.8 190 100.0
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 4.1e-107 391.3 190 98.4
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 1.0e-89 333.6 201 78.6
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 5.6e-88 327.8 205 77.1
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 7.3e-88 327.4 200 77.5
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 4.7e-87 324.7 198 78.8
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 1.7e-84 316.2 198 76.8
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 4.9e-84 314.7 199 75.4
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 6.4e-84 314.3 201 75.1
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 7.8e-74 280.8 198 69.7
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 4.3e-72 275.0 197 67.0
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 4.3e-72 275.0 196 67.9
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 9.5e-72 273.9 197 67.0
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 1.2e-71 273.5 196 67.9
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 1.2e-71 273.5 196 67.9
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 2.1e-71 272.7 197 65.5
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 2.1e-71 272.7 188 68.6
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 2.1e-71 272.7 198 65.2
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 1.1e-70 270.4 198 64.6
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 1.8e-70 269.6 197 67.5
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 1.8e-70 269.6 197 66.5
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 2.3e-70 269.2 197 66.0
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 2.3e-70 269.2 198 64.6
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 1.7e-68 263.1 196 64.8
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.7e-68 263.1 194 62.4
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 3.7e-68 261.9 199 63.8
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 6.4e-68 261.2 197 65.0
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 8.4e-68 260.8 194 61.9
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.9e-67 259.6 200 65.0
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 2.4e-67 259.2 195 65.6
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 3.2e-67 258.8 194 61.9
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 3.2e-67 258.8 194 64.9
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 7.1e-67 257.7 196 59.7
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 7.1e-67 257.7 193 63.7
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 1.2e-66 256.9 201 63.7
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 1.2e-66 256.9 196 64.3
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 1.6e-66 256.5 198 63.1
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 1.6e-66 256.5 199 63.8
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 2.1e-66 256.1 198 60.6
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 2.7e-66 255.8 198 62.6
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 7.8e-66 254.2 195 65.1
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 1.3e-65 253.4 200 63.0
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 1.3e-65 253.4 198 62.6
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 2.3e-65 252.7 187 63.1
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 5.1e-65 251.5 199 61.3
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 8.6e-65 250.8 149 74.5
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.5e-64 250.0 197 61.9
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 1.9e-64 249.6 205 58.5
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 1.9e-64 249.6 188 64.4
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 1.9e-64 249.6 188 64.4
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 2.5e-64 249.2 197 59.4
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 3.3e-64 248.8 197 61.4
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 4.3e-64 248.4 200 62.0
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 5.6e-64 248.1 167 67.1
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 9.6e-64 247.3 195 61.0
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 2.8e-63 245.7 145 76.6
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 2.8e-63 245.7 197 60.4
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 3.6e-63 245.4 213 58.7
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 3.6e-63 245.4 200 61.0
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 6.2e-63 244.6 200 61.5
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 1.1e-62 243.8 200 60.5
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 1.4e-62 243.4 199 59.3
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 1.8e-62 243.0 198 60.1
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 1.8e-62 243.0 198 60.1
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 4.0e-62 241.9 195 60.5
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 2.0e-61 239.6 198 56.1
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 3.4e-61 238.8 197 54.8
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 7.6e-61 237.7 197 57.4
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 2.2e-60 236.1 198 55.1
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 2.9e-60 235.7 198 58.6
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 3.8e-60 235.3 200 56.5
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 4.9e-60 235.0 185 61.1
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 8.4e-60 234.2 198 58.6
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 1.9e-59 233.0 198 54.5
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 9.3e-59 230.7 205 52.2
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 1.6e-58 229.9 197 56.3
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 3.5e-58 228.8 200 57.5
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 3.5e-58 228.8 197 57.4
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 4.6e-58 228.4 198 54.5
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 7.8e-58 227.6 188 60.6
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 1.3e-57 226.9 211 50.7
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 2.3e-57 226.1 217 49.3
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 3.0e-57 225.7 211 50.7
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 3.0e-57 225.7 162 65.4
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 8.7e-57 224.2 196 53.6
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 7.3e-56 221.1 177 58.8
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 8.1e-55 217.6 195 57.4
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 1.8e-54 216.5 162 63.0
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 9.0e-54 214.2 164 59.8
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 7.6e-53 211.1 197 53.3
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 9.9e-53 210.7 201 52.2
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 2.3e-49 199.5 216 49.5
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 4.3e-48 195.3 199 48.2
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 8.1e-47 191.0 156 57.7
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.4e-46 190.3 144 65.3
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 6.7e-41 171.4 221 46.6
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 8.7e-41 171.0 130 66.2
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 1.3e-39 167.2 197 45.7
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 3.7e-39 165.6 194 43.8
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 4.8e-39 165.2 209 44.0
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 1.6e-34 150.2 190 40.5
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 2.1e-34 149.8 105 68.6
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 1.0e-33 147.5 95 74.7
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 5.1e-25 118.6 162 43.8
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.5e-21 107.1 89 61.8
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 1.6e-18 97.1 94 43.6
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 6.1e-18 95.1 91 48.4
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 1.0e-12 77.8 64 51.6
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 1.0e-09 67.8 86 41.9


User provided reference genes

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