Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 4.1e-87 324.7 165 100.0
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 2.1e-83 312.4 165 96.4
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 2.8e-59 232.3 175 72.0
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 4.7e-59 231.5 175 72.6
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 3.1e-58 228.8 173 71.1
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 4.0e-58 228.4 173 69.9
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 8.9e-58 227.3 168 70.2
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 2.6e-57 225.7 174 70.1
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 2.6e-57 225.7 172 69.2
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 9.8e-57 223.8 168 69.6
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 4.9e-56 221.5 172 67.4
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.0e-53 213.8 176 68.2
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 1.3e-53 213.4 174 65.5
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.3e-53 213.4 176 65.3
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 5.0e-53 211.5 174 64.9
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 5.2e-50 201.4 174 66.1
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 1.5e-49 199.9 178 64.0
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 7.5e-49 197.6 179 62.0
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 9.8e-49 197.2 171 60.8
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.3e-48 196.8 178 61.2
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 1.3e-48 196.8 174 62.6
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 1.7e-48 196.4 176 63.6
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 6.4e-48 194.5 179 60.3
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 8.3e-48 194.1 177 61.0
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 1.1e-47 193.7 180 62.2
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 2.4e-47 192.6 178 60.1
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 4.1e-47 191.8 178 59.0
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 9.2e-47 190.7 177 59.3
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 2.7e-46 189.1 174 58.6
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 3.5e-46 188.7 178 56.7
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 6.0e-46 188.0 178 56.2
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 7.8e-46 187.6 176 61.4
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.0e-45 187.2 179 58.7
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 1.7e-45 186.4 175 58.3
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 3.0e-45 185.7 172 58.7
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 3.0e-45 185.7 170 58.2
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 3.0e-45 185.7 170 58.2
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 3.0e-45 185.7 171 61.4
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 5.1e-45 184.9 173 60.1
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.1e-45 184.9 173 60.1
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.1e-45 184.9 173 60.1
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 5.1e-45 184.9 170 58.8
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 5.1e-45 184.9 175 59.4
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.1e-44 183.7 165 60.0
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.5e-44 183.3 173 60.1
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 8.1e-43 177.6 176 55.7
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.1e-42 177.2 176 57.4
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.4e-42 176.8 163 60.1
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 1.8e-42 176.4 177 56.5
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 4.0e-42 175.3 167 54.5
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 1.2e-41 173.7 178 55.6
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 2.6e-41 172.6 160 58.1
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 4.4e-41 171.8 182 57.7
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 7.6e-41 171.0 181 52.5
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.7e-40 169.9 175 53.7
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.7e-40 169.9 181 56.4
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 2.9e-40 169.1 164 56.7
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 2.9e-40 169.1 178 56.2
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 1.1e-39 167.2 178 57.3
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.1e-39 167.2 185 51.9
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 2.4e-39 166.0 180 57.2
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 2.4e-39 166.0 185 53.5
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 4.1e-39 165.2 178 52.2
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 7.8e-38 161.0 178 53.4
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.0e-37 160.6 170 53.5
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 1.0e-37 160.6 179 52.0
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.3e-37 160.2 172 50.0
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 2.3e-37 159.5 173 53.8
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 3.0e-37 159.1 177 52.0
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 3.9e-37 158.7 172 51.2
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 5.1e-37 158.3 171 53.8
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 6.6e-37 157.9 176 50.6
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 6.6e-37 157.9 187 50.8
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 8.6e-37 157.5 178 52.2
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 1.5e-36 156.8 177 50.3
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 2.5e-36 156.0 177 49.2
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 3.3e-36 155.6 179 52.5
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 3.3e-36 155.6 179 51.4
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 3.3e-36 155.6 174 52.9
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 5.6e-36 154.8 173 53.2
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 7.3e-36 154.5 177 49.7
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 7.3e-36 154.5 164 53.0
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.2e-35 153.7 175 49.7
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 3.6e-35 152.1 178 51.7
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 4.7e-35 151.8 171 54.4
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.7e-35 151.8 167 50.9
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 6.9e-34 147.9 179 50.8
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 6.9e-34 147.9 182 48.9
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 4.4e-33 145.2 181 45.9
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 3.8e-32 142.1 178 47.2
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 1.9e-31 139.8 170 45.3
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 4.2e-31 138.7 183 46.4
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 7.1e-31 137.9 168 45.8
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 7.1e-31 137.9 168 45.8
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.1e-30 136.3 125 62.4
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.7e-29 133.3 179 47.5
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 3.0e-29 132.5 178 48.3
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.0e-29 132.5 176 46.6
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.1e-28 130.6 166 47.6
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.9e-28 129.8 127 56.7
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 3.3e-28 129.0 160 48.1
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 5.6e-28 128.3 155 48.4
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 7.3e-28 127.9 158 49.4
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.3e-27 127.1 158 49.4
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.3e-27 127.1 177 43.5
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.6e-27 126.7 158 49.4
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.6e-27 126.7 171 44.4
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 6.2e-27 124.8 161 47.8
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 8.1e-27 124.4 164 47.6
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 8.1e-27 124.4 173 43.9
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 8.1e-27 124.4 164 47.6
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 8.1e-27 124.4 164 47.6
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 1.1e-26 124.0 120 53.3
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.4e-26 123.6 164 47.6
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.4e-26 123.6 164 44.5
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.8e-26 123.2 170 43.5
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.8e-26 123.2 160 45.6
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 3.1e-26 122.5 170 42.9
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 4.0e-26 122.1 170 42.9
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 5.3e-26 121.7 165 47.9
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 6.9e-26 121.3 162 43.8
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 1.2e-25 120.6 170 43.5
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 1.2e-25 120.6 158 48.1
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 1.5e-25 120.2 170 43.5
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.5e-25 120.2 100 64.0
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 2.0e-25 119.8 176 43.8
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 3.4e-25 119.0 170 44.1
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 1.7e-24 116.7 171 43.9
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 2.2e-24 116.3 161 45.3
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 3.8e-24 115.5 170 41.2
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 3.8e-24 115.5 132 48.5
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.9e-23 113.2 168 44.6
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 3.9e-21 105.5 149 43.0
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.4e-20 101.3 113 50.4
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 6.2e-19 98.2 118 44.9
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.2e-17 94.0 96 53.1
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 3.5e-14 82.4 186 37.1
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 1.8e-13 80.1 162 34.6
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 5.1e-13 78.6 69 60.9
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 8.7e-13 77.8 106 44.3
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 8.7e-13 77.8 176 32.4
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 1.4e-10 70.5 167 34.1
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 4.0e-10 68.9 204 30.4
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 7.6e-09 64.7 166 31.9


User provided reference genes

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