Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 2.8e-213 745.0 364 100.0
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 1.6e-208 729.2 364 98.1
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 1.7e-157 559.7 364 77.2
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 7.0e-156 554.3 365 76.4
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 3.5e-155 552.0 368 74.7
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.2e-147 526.9 368 73.9
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 5.2e-143 511.5 368 72.8
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 8.9e-143 510.8 364 69.2
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 3.4e-142 508.8 367 69.5
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 8.6e-138 494.2 355 70.7
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 1.1e-129 467.2 364 65.7
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 2.2e-125 453.0 365 64.9
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 2.4e-124 449.5 370 65.7
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.7e-117 426.8 347 64.6
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 4.9e-117 425.2 342 64.9
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 2.1e-115 419.9 338 63.9
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 2.7e-115 419.5 338 63.0
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 7.3e-113 411.4 338 62.4
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.3e-109 400.6 338 63.3
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 3.5e-107 392.5 340 61.5
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 7.8e-107 391.3 368 58.7
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.9e-106 389.0 368 58.4
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.9e-105 386.7 368 57.6
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.5e-105 386.3 290 66.9
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 1.6e-104 383.6 292 66.8
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 4.8e-104 382.1 339 59.9
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 4.8e-104 382.1 368 59.0
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 1.8e-103 380.2 226 79.2
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 2.4e-103 379.8 367 57.5
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 3.1e-103 379.4 348 58.0
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 6.9e-103 378.3 223 80.3
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 6.9e-103 378.3 320 61.2
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 9.0e-103 377.9 294 65.6
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.2e-102 377.5 289 67.1
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 4.5e-102 375.6 370 56.5
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.3e-101 374.0 351 57.0
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.3e-101 374.0 367 56.7
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 2.2e-101 373.2 369 54.7
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 3.8e-101 372.5 210 83.3
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.1e-100 370.9 231 77.9
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 1.9e-100 370.2 237 75.1
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 4.2e-100 369.0 330 59.4
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 9.3e-100 367.9 317 60.9
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 9.3e-100 367.9 205 85.9
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 9.3e-100 367.9 295 63.4
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 1.2e-99 367.5 290 64.5
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 2.7e-99 366.3 297 64.0
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 3.5e-99 365.9 222 77.0
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 6.0e-99 365.2 242 72.7
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 3.0e-98 362.8 348 56.9
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 3.0e-98 362.8 256 70.3
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 5.1e-98 362.1 303 61.4
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 5.1e-98 362.1 207 82.1
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 6.7e-98 361.7 303 61.1
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 8.7e-98 361.3 299 61.5
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 8.7e-98 361.3 214 79.4
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 8.7e-98 361.3 203 83.3
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 8.7e-98 361.3 244 72.1
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 1.9e-97 360.1 225 74.7
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 1.9e-97 360.1 206 81.1
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.9e-97 360.1 206 81.1
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 3.3e-97 359.4 204 81.9
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.3e-97 359.0 206 81.1
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 7.4e-97 358.2 287 64.5
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 7.4e-97 358.2 261 67.0
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 3.7e-96 355.9 217 76.0
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.1e-95 354.4 262 66.8
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.1e-95 354.4 309 58.9
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.8e-95 353.6 295 61.4
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 2.4e-95 353.2 214 78.0
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 2.4e-95 353.2 294 61.2
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 5.3e-95 352.1 261 66.3
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 9.0e-95 351.3 292 64.0
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 9.0e-95 351.3 312 58.0
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 3.4e-94 349.4 294 61.2
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 3.4e-94 349.4 360 54.4
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 7.6e-94 348.2 279 62.7
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 1.0e-93 347.8 294 61.9
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 1.7e-93 347.1 237 70.9
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 2.2e-93 346.7 224 71.9
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 2.2e-93 346.7 224 71.9
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 2.2e-93 346.7 289 59.5
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 2.9e-93 346.3 232 69.8
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 2.9e-93 346.3 206 76.7
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 3.8e-93 345.9 295 59.3
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 3.8e-93 345.9 290 60.7
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 3.8e-93 345.9 290 60.7
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 4.9e-93 345.5 364 53.8
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 6.4e-93 345.1 213 74.6
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 8.4e-93 344.7 208 76.4
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 8.4e-93 344.7 295 59.3
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.1e-92 344.4 352 54.8
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.1e-92 344.4 352 54.8
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 1.4e-92 344.0 204 76.0
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.4e-92 344.0 292 60.3
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.9e-92 343.6 206 75.2
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.2e-92 342.4 234 70.5
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 4.2e-92 342.4 195 80.5
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 2.1e-91 340.1 204 76.0
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 2.1e-91 340.1 223 70.4
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 3.5e-91 339.3 194 81.4
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 4.6e-91 339.0 194 80.9
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 6.0e-91 338.6 295 60.0
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 7.9e-91 338.2 294 59.5
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 1.5e-89 334.0 295 59.0
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 2.8e-88 329.7 224 71.4
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 9.0e-87 324.7 391 49.6
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.2e-86 324.3 287 56.4
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 4.5e-86 322.4 299 57.5
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 7.6e-86 321.6 206 73.8
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 7.6e-86 321.6 198 75.3
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.7e-85 320.5 198 75.3
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 2.2e-85 320.1 223 67.3
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.1e-84 317.8 293 54.6
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 5.5e-84 315.5 199 72.4
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 2.5e-81 306.6 291 55.0
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.6e-80 303.9 200 68.0
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 6.5e-77 292.0 161 81.4
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.6e-75 287.3 222 59.5
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 1.5e-73 280.8 162 76.5
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 6.3e-72 275.4 145 86.2
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.0e-70 270.4 161 75.2
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 2.6e-70 270.0 201 58.7
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.1e-68 264.6 200 60.5
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.4e-66 257.7 150 76.0
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.0e-66 256.5 231 59.3
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 1.1e-63 248.1 146 78.8
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 5.3e-63 245.7 242 55.8
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 2.1e-59 233.8 209 53.1
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 3.6e-51 206.5 121 74.4
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 2.8e-48 196.8 152 65.1
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.5e-44 184.5 156 57.7
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 4.2e-44 183.0 177 48.6
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 3.9e-29 133.3 116 51.7
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 4.0e-26 123.2 190 43.7
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 5.4e-23 112.8 83 55.4
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 1.1e-18 98.6 158 39.2
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 8.9e-18 95.5 92 55.4
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 7.5e-17 92.4 211 36.0
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.3e-13 81.6 129 41.9
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 1.3e-13 81.6 140 40.7
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 3.3e-12 77.0 126 41.3
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 2.2e-08 64.3 43 72.1
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 9.2e-07 58.9 89 40.4


User provided reference genes

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