Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EUP4KI Arachis hypogaea HOM05D002764 ORTHO05D002960 1.1e-116 423.3 209 100.0
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 8.6e-66 254.2 237 62.4
arahy.Tifrunner.gnm1.ann1.25YVJA Arachis hypogaea HOM05D002764 ORTHO05D002960 4.9e-45 185.3 139 70.5
arahy.Tifrunner.gnm1.ann1.MDM23I Arachis hypogaea HOM05D002764 ORTHO05D002960 3.0e-42 176.0 130 72.3
arahy.Tifrunner.gnm1.ann1.VK0W6N Arachis hypogaea HOM05D002764 ORTHO05D002960 3.0e-42 176.0 130 72.3
arahy.Tifrunner.gnm1.ann1.P96IG1 Arachis hypogaea HOM05D002764 ORTHO05D002960 3.3e-41 172.6 135 67.4
Psat4g112480 Pisum sativum HOM05D002764 ORTHO05D002960 1.2e-35 154.1 130 61.5
TPR.G19832 Trifolium pratense HOM05D002764 ORTHO05D002960 2.1e-35 153.3 130 62.3
VMungo0251G1067 Vigna mungo HOM05D002764 ORTHO05D002960 4.6e-35 152.1 130 60.8
Lj4g0007006 Lotus japonicus HOM05D002764 ORTHO05D002960 1.3e-34 150.6 130 60.0
Medtr8g070640 Medicago truncatula HOM05D002764 ORTHO05D002960 1.7e-34 150.2 130 60.8
Phvul.003G274500 Phaseolus vulgaris HOM05D002764 ORTHO05D002960 1.7e-34 150.2 130 60.0
Glyma.16G094500 Glycine max HOM05D002764 ORTHO05D002960 2.3e-34 149.8 130 60.8
Gohir.D12G049400 Gossypium hirsutum HOM05D002764 ORTHO05D002960 2.5e-33 146.4 130 60.0
Gorai.008G052300 Gossypium raimondii HOM05D002764 ORTHO05D002960 2.5e-33 146.4 130 60.0
Glyma.08G264402 Glycine max HOM05D002764 ORTHO05D002960 4.3e-33 145.6 130 60.0
Lalb_Chr16g0391871 Lupinus albus HOM05D002764 ORTHO05D002960 4.3e-33 145.6 130 57.7
Gohir.A12G051200 Gossypium hirsutum HOM05D002764 ORTHO05D002960 5.6e-33 145.2 130 59.2
COL.COLO4_25012 Corchorus olitorius HOM05D002764 ORTHO05D002960 6.2e-32 141.7 130 58.5
Manes.16G060600 Manihot esculenta HOM05D002764 ORTHO05D002960 6.2e-32 141.7 130 56.9
Nn1g09845 Nelumbo nucifera HOM05D002764 ORTHO05D002960 8.1e-32 141.4 145 52.4
Lj2A340G20 Lonicera japonica HOM05D002764 ORTHO05D002960 1.4e-31 140.6 131 55.7
Ciclev10015913m.g Citrus clementina HOM05D002764 ORTHO05D002960 2.4e-31 139.8 130 56.2
Duzib248G0661 Durio zibethinus HOM05D002764 ORTHO05D002960 4.0e-31 139.0 139 53.2
Thecc.02G000300 Theobroma cacao HOM05D002764 ORTHO05D002960 4.0e-31 139.0 139 52.5
ClCG01G025980 Citrullus lanatus HOM05D002764 ORTHO05D002960 5.3e-31 138.7 139 54.0
Dinv05281 Davidia involucrata HOM05D002764 ORTHO05D002960 6.9e-31 138.3 130 55.4
FAN11G2045 Fragaria x ananassa HOM05D002764 ORTHO05D002960 6.9e-31 138.3 130 56.2
RcHm_v2.0_Chr5g0022461 Rosa chinensis HOM05D002764 ORTHO05D002960 6.9e-31 138.3 130 56.9
TAR627G0266 Trochodendron aralioides HOM05D002764 ORTHO05D002960 1.2e-30 137.5 131 55.0
ATR0737G018 Amborella trichopoda HOM05D002764 ORTHO05D002960 1.5e-30 137.1 130 53.8
Cfa001171 Carpinus fangiana HOM05D002764 ORTHO05D002960 1.5e-30 137.1 131 55.7
FAN21G1338 Fragaria x ananassa HOM05D002764 ORTHO05D002960 1.5e-30 137.1 130 55.4
Haze_05179 Corylus avellana HOM05D002764 ORTHO05D002960 2.0e-30 136.7 131 55.7
FAN25G1120 Fragaria x ananassa HOM05D002764 ORTHO05D002960 2.0e-30 136.7 129 56.6
Sabra03G0114300 Salix brachista HOM05D002764 ORTHO05D002960 3.4e-30 136.0 148 52.7
GSVIVG01011697001 Vitis vinifera HOM05D002764 ORTHO05D002960 4.5e-30 135.6 130 54.6
FAN16G2462 Fragaria x ananassa HOM05D002764 ORTHO05D002960 5.8e-30 135.2 130 55.4
HPP92_005201 Vanilla planifolia HOM05D002764 ORTHO05D002960 5.8e-30 135.2 134 52.2
Rhsim13G0136800 Rhododendron simsii HOM05D002764 ORTHO05D002960 9.9e-30 134.4 130 54.6
ATR0721G170 Amborella trichopoda HOM05D002764 ORTHO05D002960 1.3e-29 134.0 130 52.3
Sed0003310 Sechium edule HOM05D002764 ORTHO05D002960 1.7e-29 133.7 139 51.8
FvH4_3g13510 Fragaria vesca HOM05D002764 ORTHO05D002960 2.2e-29 133.3 130 54.6
EL10Ac6g13754 Beta vulgaris HOM05D002764 ORTHO05D002960 3.8e-29 132.5 134 50.0
CDE10G0875 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 3.8e-29 132.5 130 50.8
Potri.003G157700 Populus trichocarpa HOM05D002764 ORTHO05D002960 3.8e-29 132.5 130 53.1
AUR62007725 Chenopodium quinoa HOM05D002764 ORTHO05D002960 4.9e-29 132.1 133 51.9
Hma1.2p1_0082F.1_g042610 Hydrangea macrophylla HOM05D002764 ORTHO05D002960 4.9e-29 132.1 130 53.8
vmacro03577 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 6.4e-29 131.7 130 54.6
Ah.03g132240 Amaranthus hybridus HOM05D002764 ORTHO05D002960 8.4e-29 131.3 133 50.4
CsaV3_6G053200 Cucumis sativus L. HOM05D002764 ORTHO05D002960 8.4e-29 131.3 139 51.1
Aqoxy2G00386 Aquilegia oxysepala HOM05D002764 ORTHO05D002960 1.1e-28 131.0 130 50.8
Hund21012 Selenicereus undatus HOM05D002764 ORTHO05D002960 1.1e-28 131.0 130 51.5
CiPaw.09G141200 Carya illinoinensis HOM05D002764 ORTHO05D002960 1.4e-28 130.6 131 52.7
Sabra01G0051700 Salix brachista HOM05D002764 ORTHO05D002960 1.4e-28 130.6 128 52.3
Potri.001G073300 Populus trichocarpa HOM05D002764 ORTHO05D002960 1.9e-28 130.2 128 53.1
AUR62026563 Chenopodium quinoa HOM05D002764 ORTHO05D002960 4.2e-28 129.0 133 50.4
Eucgr.E04332 Eucalyptus grandis HOM05D002764 ORTHO05D002960 4.2e-28 129.0 131 50.4
ECA232G3093 Erigeron canadensis HOM05D000029 ORTHO05D000001 7.1e-28 128.3 131 53.4
Migut.N01903 Erythranthe guttata HOM05D002764 ORTHO05D002960 7.1e-28 128.3 130 53.1
Lsat_1_v5_gn_8_107580 Lactuca sativa HOM05D002764 ORTHO05D002960 9.3e-28 127.9 131 50.4
Sc25g0004730 Simmondsia chinensis HOM05D002764 ORTHO05D002960 9.3e-28 127.9 131 51.1
Aa31LG6G12060 Aethionema arabicum HOM05D002764 ORTHO05D002960 1.6e-27 127.1 150 45.3
Zm00001eb116800 Zea mays HOM05D002764 ORTHO05D002960 1.6e-27 127.1 128 50.8
DCAR_007770 Daucus carota HOM05D002764 ORTHO05D002960 2.7e-27 126.3 130 47.7
Nitab4.5_0006120g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 3.5e-27 125.9 127 51.2
Prupe.4G123300 Prunus persica HOM05D002764 ORTHO05D002960 3.5e-27 125.9 130 53.8
THA.LOC104814331 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 4.6e-27 125.6 151 45.0
PSO063G4440 Papaver somniferum HOM05D002764 ORTHO05D002960 7.9e-27 124.8 130 49.2
PGR042G3469 Punica granatum HOM05D002764 ORTHO05D002960 7.9e-27 124.8 131 50.4
HanXRQChr09g0257691 Helianthus annuus HOM05D002764 ORTHO05D002960 1.0e-26 124.4 131 51.1
SalBow4G2049 Salvia bowleyana HOM05D002764 ORTHO05D002960 1.0e-26 124.4 130 48.5
SalBow4G2392 Salvia bowleyana HOM05D002764 ORTHO05D002960 1.0e-26 124.4 130 48.5
MELO3C006994.2 Cucumis melo HOM05D002764 ORTHO05D002960 1.3e-26 124.0 178 44.4
TWI15G1089 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 1.3e-26 124.0 130 51.5
TWI38G0493 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 1.3e-26 124.0 130 50.8
CSS0002485 Camellia sinensis var. sinensis HOM05D002764 ORTHO05D002960 2.3e-26 123.2 129 51.9
PSO782G1036 Papaver somniferum HOM05D002764 ORTHO05D002960 2.3e-26 123.2 130 48.5
Nitab4.5_0004266g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 3.0e-26 122.9 128 50.0
Cc09_g04490 Coffea canephora HOM05D002764 ORTHO05D002960 3.9e-26 122.5 128 53.1
Solyc11g068610.2 Solanum lycopersicum HOM05D002764 ORTHO05D002960 1.1e-25 120.9 127 49.6
Sopen11g027330 Solanum pennellii HOM05D002764 ORTHO05D002960 1.1e-25 120.9 127 49.6
MD10G1221300 Malus domestica HOM05D002764 ORTHO05D002960 1.5e-25 120.6 131 49.6
CAN.G745.4 Capsicum annuum HOM05D002764 ORTHO05D002960 3.3e-25 119.4 127 47.2
PGSC0003DMG400026351 Solanum tuberosum HOM05D002764 ORTHO05D002960 3.3e-25 119.4 127 48.8
THA.LOC104798576 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 3.3e-25 119.4 130 46.2
BcaB03g13812 Brassica carinata HOM05D002764 ORTHO05D002960 5.6e-25 118.6 128 46.9
Peaxi162Scf00040g00214 Petunia axillaris HOM05D002764 ORTHO05D002960 5.6e-25 118.6 127 48.0
A07p09600 Brassica napus HOM05D002764 ORTHO05D002960 7.4e-25 118.2 128 46.9
BolC7t41980H Brassica oleracea HOM05D002764 ORTHO05D002960 7.4e-25 118.2 128 46.9
BraA07t28755Z Brassica rapa HOM05D002764 ORTHO05D002960 7.4e-25 118.2 128 46.9
Sp1g26720 Schrenkiella parvula HOM05D002764 ORTHO05D002960 7.4e-25 118.2 128 46.9
CANSAT35G1062 Cannabis sativa HOM05D002764 ORTHO05D002960 9.6e-25 117.9 130 48.5
BcaB07g32735 Brassica carinata HOM05D002764 ORTHO05D002960 2.1e-24 116.7 128 46.1
BcaC05g27107 Brassica carinata HOM05D002764 ORTHO05D002960 2.1e-24 116.7 128 46.1
A09p35450 Brassica napus HOM05D002764 ORTHO05D002960 2.1e-24 116.7 128 46.1
C05p29900 Brassica napus HOM05D002764 ORTHO05D002960 2.1e-24 116.7 128 46.1
C07p14780 Brassica napus HOM05D002764 ORTHO05D002960 2.1e-24 116.7 128 46.1
BolC5t31722H Brassica oleracea HOM05D002764 ORTHO05D002960 2.1e-24 116.7 128 46.1
BraA09t39073Z Brassica rapa HOM05D002764 ORTHO05D002960 2.1e-24 116.7 128 46.1
SEGI_18231 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 1.1e-23 114.4 130 46.2
MSTRG.28023 Avicennia marina HOM05D002764 ORTHO05D002960 2.4e-23 113.2 130 44.6
Thhalv10008211m.g Eutrema salsugineum HOM05D002764 ORTHO05D002960 2.4e-23 113.2 128 44.5
SHI16745 Sapria himalayana HOM05D002764 ORTHO05D002960 6.9e-23 111.7 130 46.9
Pp3c14_19930 Physcomitrium patens HOM05D002764 ORTHO05D002960 1.5e-22 110.5 130 46.2
AL1G45080 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 2.6e-22 109.8 128 43.8
AT1G30825 Arabidopsis thaliana HOM05D002764 ORTHO05D002960 2.6e-22 109.8 128 43.8
Carub.0001s2914 Capsella rubella HOM05D002764 ORTHO05D002960 2.6e-22 109.8 128 43.8
CARHR030300 Cardamine hirsuta HOM05D002764 ORTHO05D002960 2.6e-22 109.8 128 43.8
SMO118G0168 Selaginella moellendorffii HOM05D002764 ORTHO05D002960 2.9e-21 106.3 130 43.8
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 4.9e-21 105.5 131 43.5
Mapoly0019s0138 Marchantia polymorpha HOM05D002764 ORTHO05D002960 8.4e-21 104.8 127 43.3
AagrBONN_evm.TU.Sc2ySwM_344.4310 Anthoceros agrestis HOM05D002764 ORTHO05D002960 1.4e-20 104.0 130 41.5
AagrBONN_evm.TU.Sc2ySwM_362.1937 Anthoceros agrestis HOM05D002764 ORTHO05D002960 1.9e-20 103.6 130 40.0
Oeu021869.2 Olea europaea HOM05D002764 ORTHO05D002960 1.9e-20 103.6 191 37.2
Pp3c1_32330 Physcomitrium patens HOM05D002764 ORTHO05D002960 3.2e-20 102.8 129 41.9
SGA_v2.0_scaffold263G46025 Striga asiatica HOM05D002764 ORTHO05D002960 3.2e-20 102.8 128 44.5
RcHm_v2.0_Chr6g0246611 Rosa chinensis HOM05D002764 ORTHO05D002960 5.5e-20 102.1 104 56.7
DCAR_004367 Daucus carota HOM05D002764 ORTHO05D002960 9.3e-20 101.3 127 43.3
SEGI_02118 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 3.9e-18 95.9 126 41.3
arahy.Tifrunner.gnm1.ann1.ZP6BU8 Arachis hypogaea HOM05D026828 ORTHO05D087142 5.7e-17 92.0 58 82.8
arahy.Tifrunner.gnm1.ann1.XRHL1A Arachis hypogaea HOM05D026828 ORTHO05D086017 7.4e-17 91.7 61 78.7
arahy.Tifrunner.gnm1.ann1.D8XYXE Arachis hypogaea HOM05D026828 ORTHO05D084988 2.8e-16 89.7 58 81.0
CDE10G1113 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 4.0e-15 85.9 130 36.9
RcHm_v2.0_Chr6g0255501 Rosa chinensis HOM05D002764 ORTHO05D002960 7.6e-14 81.6 96 49.0
Ca_22537_v3 Cicer arietinum L. HOM05D002764 ORTHO05D002960 1.0e-13 81.3 46 82.6
QL11p010611 Quercus lobata HOM05D002764 ORTHO05D002960 2.2e-13 80.1 48 72.9
QL11p010613 Quercus lobata HOM05D002764 ORTHO05D002960 1.9e-12 77.0 91 48.4
RcHm_v2.0_Chr1g0328971 Rosa chinensis HOM05D002764 ORTHO05D002960 5.5e-12 75.5 60 65.0
RcHm_v2.0_Chr2g0116291 Rosa chinensis HOM05D002764 ORTHO05D002960 9.3e-12 74.7 55 67.3
Cpa.g.sc30.58 Carica papaya HOM05D002764 ORTHO05D002960 2.1e-11 73.6 48 66.7
RcHm_v2.0_Chr6g0255481 Rosa chinensis HOM05D002764 ORTHO05D002960 7.9e-11 71.6 57 64.9
CAN.G1213.3 Capsicum annuum HOM05D002764 ORTHO05D002960 3.0e-10 69.7 57 54.4
CBR_g9158 Chara braunii HOM05D002764 ORTHO05D002960 2.8e-08 63.2 141 25.5
Oeu026618.1 Olea europaea HOM05D002764 ORTHO05D002960 1.1e-07 61.2 137 26.3
MBI07_g18712_MAGBIO Magnolia biondii HOM05D002764 ORTHO05D002960 1.4e-07 60.8 126 30.2
Nn3g19748 Nelumbo nucifera HOM05D002764 ORTHO05D002960 2.4e-07 60.1 133 27.8
DCAR_024283 Daucus carota HOM05D002764 ORTHO05D002960 4.1e-07 59.3 133 26.3
CSS0027427 Camellia sinensis var. sinensis HOM05D002764 ORTHO05D002960 6.9e-07 58.5 133 24.8
ATR0736G098 Amborella trichopoda HOM05D002764 ORTHO05D002960 1.5e-06 57.4 129 30.2
Actinidia11363 Actinidia chinensis HOM05D002764 ORTHO05D002960 2.6e-06 56.6 126 24.6
vmacro15471 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 3.4e-06 56.2 167 24.6
Eucgr.H00135 Eucalyptus grandis HOM05D002764 ORTHO05D002960 7.7e-06 55.1 124 25.0
Psat6g106400 Pisum sativum HOM05D002764 ORTHO05D002960 1.0e-05 54.7 126 30.2


User provided reference genes

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