Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 2.2e-274 948.3 471 100.0
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 9.4e-254 879.8 483 92.8
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 6.2e-213 744.2 490 77.6
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 5.8e-211 737.6 491 76.8
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 1.1e-209 733.4 493 76.3
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 3.0e-207 725.3 494 75.1
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 7.6e-203 710.7 497 74.0
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 2.4e-193 679.1 435 78.9
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 5.3e-188 661.4 503 68.0
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 1.7e-186 656.4 443 74.3
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 8.4e-186 654.1 446 74.0
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 1.4e-185 653.3 466 70.4
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 3.2e-185 652.1 457 72.4
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 9.3e-185 650.6 453 72.4
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 2.1e-184 649.4 453 72.4
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 6.0e-184 647.9 449 72.4
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 1.1e-182 643.7 438 72.8
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 3.3e-182 642.1 459 71.0
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 4.3e-182 641.7 440 73.0
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 9.6e-182 640.6 488 68.0
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 9.6e-182 640.6 459 70.6
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 1.8e-180 636.3 442 71.5
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 9.0e-180 634.0 479 68.1
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 9.0e-180 634.0 437 71.9
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 1.2e-179 633.6 465 69.7
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 3.4e-179 632.1 440 71.6
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 1.3e-178 630.2 476 66.6
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 8.4e-178 627.5 439 71.3
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 8.4e-178 627.5 437 71.2
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 1.1e-177 627.1 467 67.7
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 1.1e-177 627.1 475 66.1
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 3.2e-177 625.5 467 66.4
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 1.6e-176 623.2 436 71.1
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 2.1e-176 622.9 441 70.1
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 2.7e-176 622.5 478 67.4
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 2.7e-176 622.5 457 67.6
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 1.8e-175 619.8 458 68.1
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 3.0e-175 619.0 447 69.1
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 8.7e-175 617.5 441 69.2
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 8.7e-175 617.5 460 68.9
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 8.7e-175 617.5 456 71.1
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 1.1e-174 617.1 446 69.7
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 1.5e-174 616.7 437 69.8
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 5.6e-174 614.8 437 69.6
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 5.6e-174 614.8 455 68.8
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 9.6e-174 614.0 477 65.2
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 1.6e-173 613.2 481 65.7
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 2.8e-173 612.5 439 70.4
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 3.7e-173 612.1 430 72.6
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 6.2e-173 611.3 435 70.1
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 8.2e-173 610.9 452 68.6
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 3.1e-172 609.0 470 66.0
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 3.1e-172 609.0 436 69.7
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 6.9e-172 607.8 437 68.9
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 9.0e-172 607.4 449 67.9
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 1.2e-171 607.1 437 68.6
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 2.6e-171 605.9 437 68.4
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 2.6e-171 605.9 437 68.4
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 3.4e-171 605.5 436 68.8
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 7.6e-171 604.4 487 64.3
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 1.0e-170 604.0 437 68.2
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 2.9e-170 602.4 439 69.9
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 6.5e-170 601.3 465 65.6
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 1.1e-169 600.5 434 68.2
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 1.1e-169 600.5 387 76.7
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 5.5e-169 598.2 432 68.3
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 8.7e-167 590.9 426 70.0
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 1.1e-164 583.9 389 74.6
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 1.5e-163 580.1 452 68.1
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 3.8e-162 575.5 388 72.7
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 6.5e-162 574.7 505 60.8
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 1.1e-161 573.9 389 73.3
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 1.4e-161 573.5 469 63.1
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 9.4e-161 570.9 429 66.2
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 2.1e-160 569.7 455 65.1
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 1.9e-158 563.1 395 70.4
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 1.9e-158 563.1 391 70.3
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 3.3e-158 562.4 391 69.8
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 8.2e-157 557.8 355 76.9
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 1.1e-156 557.4 439 66.5
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 2.9e-154 549.3 423 65.2
Hma1.2p1_0851F.1_g228290 Hydrangea macrophylla HOM05D007030 ORTHO05D009159 1.4e-151 540.4 440 65.7
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 1.3e-149 533.9 444 61.0
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 2.8e-149 532.7 436 64.2
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 4.5e-147 525.4 432 60.2
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 1.9e-145 520.0 443 60.7
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 2.7e-144 516.2 367 69.8
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 7.5e-134 481.5 442 58.8
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 2.2e-133 479.9 329 70.8
BcaNung06381 Brassica carinata HOM05D007030 ORTHO05D009159 6.8e-127 458.4 326 67.8
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 1.7e-122 443.7 434 56.0
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 6.1e-112 408.7 435 51.3
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 6.1e-112 408.7 485 47.4
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 6.6e-106 388.7 246 74.0
Peaxi162Scf00684g00133 Petunia axillaris HOM05D007030 ORTHO05D009159 3.9e-98 362.8 245 69.8
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 7.1e-92 342.0 458 43.0
AagrBONN_evm.TU.Sc2ySwM_117.2558 Anthoceros agrestis HOM05D007030 ORTHO05D009159 1.7e-85 320.9 305 52.1
Haze_02254 Corylus avellana HOM05D007030 ORTHO05D009159 1.2e-83 314.7 282 59.6
Haze_02264 Corylus avellana HOM05D007030 ORTHO05D009159 4.6e-83 312.8 282 59.6
Solyc11g042950.1 Solanum lycopersicum HOM05D007030 ORTHO05D009159 1.0e-82 311.6 196 73.0
RcHm_v2.0_Chr4g0423361 Rosa chinensis HOM05D007030 ORTHO05D009159 1.1e-81 308.1 229 69.0
Haze_02269 Corylus avellana HOM05D007030 ORTHO05D009159 1.9e-68 264.2 211 64.9
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 1.4e-63 248.1 184 66.3
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 2.4e-63 247.3 179 68.2
RcHm_v2.0_Chr3g0496591 Rosa chinensis HOM05D007030 ORTHO05D009159 1.7e-61 241.1 303 49.5
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 9.6e-57 225.3 483 36.0
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 1.5e-46 191.4 93 98.9
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 7.7e-30 136.0 99 71.7
THA.LOC104804117 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 1.8e-26 124.8 110 54.5
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 4.4e-25 120.2 103 64.1
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 7.7e-14 82.8 52 75.0
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 1.5e-09 68.6 40 87.5
Aa31LG7G15150 Aethionema arabicum HOM05D007030 ORTHO05D009159 2.7e-06 57.8 62 51.6


User provided reference genes

Program Settings