Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 1.8e-128 462.6 233 100.0
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 4.4e-127 458.0 233 98.7
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 7.0e-109 397.5 228 85.5
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 3.8e-107 391.7 231 82.3
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 1.1e-106 390.2 230 83.5
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 1.6e-105 386.3 230 83.9
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 8.9e-104 380.6 228 81.6
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 1.5e-103 379.8 228 83.8
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 7.5e-103 377.5 230 80.0
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 7.5e-103 377.5 232 81.9
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 4.6e-100 368.2 232 76.7
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 8.6e-99 364.0 231 74.9
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.2e-97 360.1 230 75.7
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 3.6e-97 358.6 232 74.6
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 1.8e-96 356.3 229 75.1
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 4.0e-96 355.1 227 76.2
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 5.2e-96 354.8 230 74.8
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 6.8e-96 354.4 228 74.6
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 6.8e-96 354.4 231 74.5
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.2e-95 353.6 230 74.8
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 2.0e-95 352.8 225 75.6
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 2.6e-95 352.4 232 72.8
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 4.4e-95 351.7 231 74.5
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 5.8e-95 351.3 230 74.8
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 5.8e-95 351.3 228 75.4
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 9.8e-95 350.5 230 74.3
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 9.8e-95 350.5 230 73.5
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 1.7e-94 349.7 228 74.6
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 1.7e-94 349.7 231 72.7
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 2.9e-94 349.0 225 75.1
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 4.9e-94 348.2 231 73.2
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 6.4e-94 347.8 231 71.0
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 6.4e-94 347.8 228 73.2
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 8.3e-94 347.4 231 72.7
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.9e-93 346.3 228 72.8
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 2.4e-93 345.9 231 72.3
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 2.4e-93 345.9 231 72.3
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 3.2e-93 345.5 230 72.2
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 4.1e-93 345.1 232 72.4
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 9.2e-93 344.0 227 73.6
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 1.2e-92 343.6 228 72.4
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 1.2e-92 343.6 231 71.9
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 1.6e-92 343.2 228 73.2
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 3.5e-92 342.0 231 71.9
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 3.5e-92 342.0 230 72.2
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 3.5e-92 342.0 230 72.2
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 6.0e-92 341.3 224 74.6
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 6.0e-92 341.3 230 72.2
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 7.8e-92 340.9 228 72.8
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 1.0e-91 340.5 228 74.1
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 1.0e-91 340.5 231 71.0
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 1.3e-91 340.1 230 72.2
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 2.3e-91 339.3 230 71.7
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 3.0e-91 339.0 224 73.7
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 3.9e-91 338.6 230 70.4
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 6.6e-91 337.8 228 72.8
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.1e-90 337.0 228 71.1
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 1.9e-90 336.3 231 70.1
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 3.3e-90 335.5 231 71.4
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 5.6e-90 334.7 230 70.0
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 9.5e-90 334.0 231 71.4
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 9.5e-90 334.0 231 71.4
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 9.5e-90 334.0 257 65.8
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 2.1e-89 332.8 227 72.2
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 3.6e-89 332.0 230 70.9
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 3.6e-89 332.0 230 70.0
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 3.6e-89 332.0 228 71.1
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 8.1e-89 330.9 233 70.4
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 1.1e-88 330.5 228 68.9
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 1.1e-88 330.5 286 59.1
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 1.4e-88 330.1 230 70.9
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 3.1e-88 328.9 228 67.5
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 7.5e-87 324.3 254 63.8
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 4.9e-86 321.6 230 68.7
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 6.4e-86 321.2 228 68.9
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 8.3e-86 320.9 231 68.0
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 5.4e-85 318.2 228 66.2
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 7.1e-85 317.8 214 72.9
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 1.6e-84 316.6 225 68.4
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.7e-84 315.8 225 69.3
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 7.8e-84 314.3 228 65.4
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 6.6e-83 311.2 184 83.2
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 1.9e-82 309.7 202 74.8
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 1.2e-81 307.0 230 63.5
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 8.1e-81 304.3 216 69.9
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 1.5e-79 300.1 206 71.8
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 5.4e-77 291.6 230 63.9
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 6.0e-76 288.1 204 70.1
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 1.7e-75 286.6 204 69.1
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 1.7e-75 286.6 261 60.2
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 8.9e-72 274.2 183 69.4
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 5.8e-71 271.6 148 85.1
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 1.5e-66 256.9 214 65.9
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 3.3e-66 255.8 227 56.4
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.6e-63 246.1 166 73.5
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 3.9e-59 232.3 232 49.6
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 2.5e-58 229.6 228 50.0
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 1.4e-56 223.8 232 48.3
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 4.0e-56 222.2 231 51.9
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 2.2e-54 216.5 130 78.5
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 4.6e-52 208.8 231 45.9
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.2e-47 194.1 123 76.4
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.1e-42 177.6 141 66.7
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 5.7e-42 175.3 229 42.4
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 3.7e-33 146.0 112 65.2
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 7.2e-29 131.7 162 43.2
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 5.1e-27 125.6 100 61.0
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 2.6e-26 123.2 100 61.0
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 7.2e-21 105.1 339 27.7
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 1.2e-20 104.4 187 38.0
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 3.8e-14 82.8 111 45.0
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 8.5e-14 81.6 102 46.1
Ca_28940_v3 Cicer arietinum L. HOM05D001568 ORTHO05D148655 3.6e-12 76.3 226 26.1
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 3.3e-10 69.7 48 70.8
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 1.3e-09 67.8 34 85.3
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 2.0e-07 60.5 51 54.9
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 5.9e-07 58.9 36 69.4
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 5.9e-07 58.9 51 51.0
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 5.9e-07 58.9 51 51.0
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 5.9e-07 58.9 51 51.0


User provided reference genes

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