Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 3371.3 1789 100.0
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 3371.3 1789 100.0
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 2126.7 1680 66.7
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 2074.3 1673 65.5
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 1968.7 1681 62.5
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 0.0e+00 1929.5 1681 60.9
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1906.3 1675 61.5
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 1906.3 1679 61.4
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1679.5 1279 67.1
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1671.0 1281 66.6
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 0.0e+00 1667.5 1349 63.4
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1398.6 1744 47.5
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1385.2 1732 47.2
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1322.4 1760 45.9
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 0.0e+00 1304.7 937 69.3
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1274.2 1744 44.6
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1244.2 1720 44.2
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1217.6 1765 43.5
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1194.5 1618 45.2
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1184.1 1714 42.9
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1176.8 1843 41.7
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1174.5 1713 42.7
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1155.2 1706 42.8
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1151.0 1705 42.1
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 1140.6 1731 42.2
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1133.2 1728 41.7
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1130.9 1728 41.3
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1127.1 1728 41.3
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1125.2 1728 41.3
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 1124.8 1729 41.1
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1108.6 1764 40.8
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1094.3 1727 40.8
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1094.0 1722 40.8
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1080.5 1727 40.4
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1079.7 787 68.2
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1077.4 1760 39.9
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 6.6e-308 1061.6 1715 40.9
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 4.9e-303 1045.4 1414 44.0
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.1e-302 1044.3 1777 38.7
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 2.4e-302 1043.1 1741 39.1
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 4.8e-298 1028.9 1761 39.1
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 1.7e-295 1020.4 1770 39.0
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 2.5e-291 1006.5 1712 37.9
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 4.6e-285 985.7 1765 38.4
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 2.6e-280 969.9 1746 38.0
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.6e-277 960.7 1803 37.6
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 8.7e-276 954.9 1685 38.8
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 8.2e-274 948.3 1708 37.5
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 2.9e-263 913.3 1725 37.3
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 1.4e-260 904.4 1687 36.2
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.3e-258 897.9 1990 32.8
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 6.3e-258 895.6 1681 36.7
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 4.0e-252 876.3 1762 34.9
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 8.2e-250 868.6 1766 35.3
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.4e-249 867.8 1302 40.8
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.9e-247 860.1 1729 37.2
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 6.5e-247 859.0 1640 36.6
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.4e-244 851.3 1719 34.6
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.0e-244 849.7 1447 40.0
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 3.4e-243 846.7 1416 38.1
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 1.1e-241 841.6 1773 35.0
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 2.7e-240 837.0 1700 36.8
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 1.2e-237 828.2 1779 34.2
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 1.8e-236 824.3 1679 35.5
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.0e-236 823.2 1650 35.8
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 2.3e-228 797.3 1695 34.1
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 5.2e-228 796.2 1695 35.7
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 9.8e-227 792.0 1638 35.3
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 1.8e-225 787.7 1630 35.5
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 1.3e-223 781.6 1672 34.0
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 1.4e-220 771.5 815 48.8
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 4.0e-220 770.0 1632 36.3
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 9.8e-219 765.4 1652 33.4
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.2e-218 764.2 1639 34.2
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 3.2e-217 760.4 1727 33.6
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 4.6e-216 756.5 1812 32.6
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 2.3e-215 754.2 1637 34.2
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 5.6e-214 749.6 1314 37.4
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 4.4e-211 740.0 1758 33.1
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 7.5e-211 739.2 1755 33.0
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 1.7e-210 738.0 1714 33.8
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 1.4e-209 734.9 1724 33.4
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 1.6e-208 731.5 1706 32.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 5.1e-207 726.5 1645 33.0
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 6.6e-207 726.1 1705 32.8
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.5e-198 698.4 1662 32.6
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.4e-196 691.8 1794 32.2
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 5.4e-185 653.3 639 51.5
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 6.9e-180 636.3 668 50.4
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 2.2e-178 631.3 680 47.5
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.6e-173 615.1 1763 30.8
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 2.1e-165 588.2 1669 29.8
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.4e-164 584.7 1426 31.6
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 3.1e-164 584.3 577 59.8
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 9.7e-158 562.8 1361 34.0
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.0e-154 552.7 1644 29.7
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 6.5e-138 496.9 1093 36.4
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 8.6e-122 443.4 910 31.5
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.8e-116 425.6 432 48.6
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 2.1e-104 385.6 366 60.4
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 2.8e-104 385.2 379 58.0
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 2.9e-101 375.2 533 40.5
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.4e-95 356.3 1157 30.7
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.4e-95 356.3 624 36.2
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 6.6e-82 310.8 899 27.5
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 2.1e-72 279.3 330 51.5
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 1.1e-71 276.9 595 36.5
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.8e-71 276.2 537 32.4
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 1.0e-66 260.4 456 32.5
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.9e-65 256.1 790 32.0
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 2.2e-61 242.7 857 28.1
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 2.4e-60 239.2 844 24.9
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 3.5e-51 208.8 671 25.9
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 1.1e-49 203.8 1225 24.2
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 1.4e-47 196.8 145 66.9
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.1e-44 187.2 130 66.2
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 4.7e-35 155.2 777 27.3
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.8e-32 145.2 111 64.9
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 8.0e-27 127.9 400 30.2
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.2e-17 97.4 283 34.3
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 6.3e-16 91.7 238 31.9
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 1.4e-15 90.5 192 39.1
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 2.0e-14 86.7 637 26.1
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 8.5e-13 81.3 63 69.8
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.5e-12 80.5 92 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 2.0e-09 70.1 307 27.0
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 3.4e-09 69.3 42 64.3
arahy.Tifrunner.gnm1.ann1.3GW1KG Arachis hypogaea HOM05D006083 ORTHO05D087359 8.3e-08 64.7 54 57.4


User provided reference genes

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