Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.6e-138 496.5 330 100.0
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 1.3e-132 476.9 331 98.2
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.7e-74 283.1 341 67.2
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 3.3e-72 276.2 341 61.6
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 2.9e-68 263.1 335 66.3
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.9e-67 260.4 340 65.9
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 2.6e-64 250.0 308 65.9
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 2.2e-63 246.9 325 58.8
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 6.3e-63 245.4 338 59.2
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.8e-62 243.8 322 57.1
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.2e-61 241.1 338 55.9
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.6e-61 240.0 330 52.7
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 3.5e-61 239.6 337 59.6
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 1.9e-59 233.8 339 58.7
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 8.0e-58 228.4 334 56.9
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.5e-56 224.2 336 53.6
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.5e-56 224.2 336 53.0
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 4.4e-56 222.6 347 47.3
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 4.4e-56 222.6 347 54.5
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.7e-56 222.2 338 58.9
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 5.7e-56 222.2 347 54.5
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 9.8e-56 221.5 325 50.2
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 2.2e-55 220.3 341 57.2
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 2.8e-55 219.9 345 52.2
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.6e-53 214.2 363 46.8
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.0e-53 213.8 362 43.4
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.5e-53 213.0 330 51.5
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 5.9e-53 212.2 296 50.3
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.3e-52 211.1 302 52.6
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.7e-52 210.7 360 44.4
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 2.2e-52 210.3 348 46.0
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.2e-52 210.3 327 48.3
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 5.0e-52 209.1 348 48.3
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 5.0e-52 209.1 347 46.7
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.5e-52 208.8 338 50.3
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 8.5e-52 208.4 352 54.5
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.1e-51 208.0 339 48.4
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.5e-51 207.6 337 57.3
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.5e-51 207.6 328 55.5
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.9e-51 207.2 323 57.0
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 3.2e-51 206.5 344 52.9
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 5.5e-51 205.7 347 52.7
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 1.6e-50 204.1 349 43.0
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 2.1e-50 203.8 365 55.3
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 2.1e-50 203.8 339 44.5
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 2.3e-49 200.3 341 56.6
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 6.8e-49 198.7 338 51.8
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 4.4e-48 196.1 353 48.2
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 5.7e-48 195.7 349 52.1
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 9.8e-48 194.9 338 55.3
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 2.2e-47 193.7 335 51.6
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 2.2e-47 193.7 318 55.7
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 2.8e-47 193.4 336 58.6
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 4.9e-47 192.6 335 51.6
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.1e-46 191.4 349 40.4
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.1e-46 191.4 340 50.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 2.4e-46 190.3 330 47.0
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 3.1e-46 189.9 337 42.4
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 4.1e-46 189.5 336 51.8
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 4.1e-46 189.5 339 48.4
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 5.4e-46 189.1 335 53.1
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 5.4e-46 189.1 335 53.1
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 5.4e-46 189.1 335 53.1
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 5.4e-46 189.1 336 52.7
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 5.4e-46 189.1 261 52.9
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.4e-46 189.1 333 48.6
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 9.1e-46 188.3 320 53.8
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 9.1e-46 188.3 331 52.0
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.2e-45 188.0 334 49.1
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.6e-45 187.6 333 48.6
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 2.7e-45 186.8 327 42.8
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 3.5e-45 186.4 337 52.2
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.5e-45 186.4 344 51.5
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.5e-45 186.0 315 43.2
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.5e-45 186.0 315 41.3
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 4.5e-45 186.0 337 40.4
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.0e-44 184.9 321 54.2
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-44 184.5 332 49.4
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.7e-44 184.1 334 41.9
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 6.6e-44 182.2 333 49.2
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 1.1e-43 181.4 324 47.8
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.5e-43 181.0 314 54.5
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.5e-43 181.0 317 49.5
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.5e-43 181.0 342 50.9
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.5e-43 180.3 353 43.9
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.6e-42 177.6 337 45.4
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.6e-42 177.6 344 48.5
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.1e-42 177.2 359 51.8
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 2.8e-42 176.8 328 53.7
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 3.6e-42 176.4 352 46.3
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 3.6e-42 176.4 322 43.5
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 4.7e-42 176.0 246 45.5
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 6.1e-42 175.6 337 45.4
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 6.1e-42 175.6 335 45.4
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.4e-41 174.5 362 49.7
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.3e-41 173.7 330 42.4
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.0e-41 173.3 321 45.8
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 3.0e-41 173.3 338 45.9
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 6.8e-41 172.2 330 45.8
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 8.9e-41 171.8 337 52.8
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.5e-40 171.0 361 51.5
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 2.0e-40 170.6 335 45.1
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 2.6e-40 170.2 338 50.9
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.4e-40 169.9 408 41.7
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 7.5e-40 168.7 285 51.2
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.3e-39 167.9 273 47.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.2e-39 167.2 311 47.9
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.2e-39 167.2 311 47.9
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 8.3e-39 165.2 312 48.1
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 1.4e-38 164.5 318 51.9
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.4e-38 163.7 327 51.4
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 5.4e-38 162.5 322 49.4
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 9.2e-38 161.8 275 50.2
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 9.2e-38 161.8 348 45.1
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.0e-37 160.6 324 38.6
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 4.6e-37 159.5 318 37.4
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.0e-36 158.3 341 47.2
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.0e-36 158.3 399 38.6
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 2.1e-34 150.6 233 54.9
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 4.7e-34 149.4 303 38.9
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.0e-32 144.1 215 60.5
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 5.8e-32 142.5 332 46.4
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 1.3e-31 141.4 276 42.8
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 4.9e-31 139.4 282 44.7
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.4e-30 137.1 304 53.3
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.2e-29 134.8 323 43.7
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.2e-29 134.8 343 38.8
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 6.0e-29 132.5 332 36.7
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.7e-28 131.0 189 45.0
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.0e-28 130.2 328 38.7
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 8.6e-28 128.6 210 40.0
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 1.5e-27 127.9 170 51.2
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 4.0e-25 119.8 340 33.5
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 4.0e-25 119.8 155 49.7
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.2e-25 119.4 273 43.2
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 8.9e-25 118.6 327 39.4
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 2.6e-24 117.1 205 54.6
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.4e-24 116.7 169 46.7
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.7e-23 114.4 314 34.7
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.9e-23 113.6 158 46.8
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.1e-22 111.7 379 38.3
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 3.2e-22 110.2 226 38.1
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.7e-21 107.1 291 45.4
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 7.8e-21 105.5 159 45.9
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 4.3e-19 99.8 293 37.2
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 7.3e-19 99.0 368 37.0
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 3.6e-18 96.7 258 34.5
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 3.4e-16 90.1 316 31.0
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.9e-15 86.3 129 44.2
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 5.4e-14 82.8 305 38.0
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.2e-13 81.6 163 38.7
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 7.8e-13 79.0 305 41.3
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 8.1e-10 68.9 87 54.0
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 2.6e-08 63.9 334 27.2
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 2.4e-06 57.4 76 47.4


User provided reference genes

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