Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 8.4e-177 623.6 326 100.0
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 7.4e-149 530.8 326 88.7
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 5.2e-118 428.3 334 71.3
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 9.8e-117 424.1 328 70.4
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 8.3e-116 421.0 322 69.9
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 8.3e-108 394.4 328 65.5
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 4.3e-104 382.1 332 62.0
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 1.2e-103 380.6 326 64.4
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 1.4e-102 377.1 322 63.4
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 2.0e-101 373.2 323 62.2
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.6e-101 372.9 323 62.2
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 5.8e-101 371.7 323 63.5
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 7.5e-101 371.3 330 62.4
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 1.3e-100 370.5 324 61.7
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 3.7e-100 369.0 322 61.2
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 4.1e-99 365.5 323 61.3
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 5.4e-99 365.2 329 61.7
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 1.6e-98 363.6 325 61.8
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 2.7e-98 362.8 326 60.4
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 1.3e-97 360.5 322 60.6
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 3.0e-97 359.4 283 63.6
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 4.3e-96 355.5 309 62.1
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 9.5e-96 354.4 301 62.8
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 2.1e-95 353.2 281 63.0
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 4.7e-95 352.1 300 62.0
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 8.1e-95 351.3 321 58.6
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 4.0e-94 349.0 323 58.8
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 6.8e-94 348.2 322 58.4
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 5.8e-93 345.1 304 61.5
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 3.7e-92 342.4 328 59.1
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 4.1e-91 339.0 295 61.4
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 6.0e-90 335.1 338 55.3
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 1.0e-89 334.3 267 63.7
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 1.7e-89 333.6 305 60.0
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 3.0e-89 332.8 325 56.6
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 8.6e-89 331.3 292 59.6
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.5e-88 330.5 327 56.0
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 4.3e-88 328.9 274 64.2
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 9.5e-88 327.8 299 58.9
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 9.5e-88 327.8 288 61.1
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 2.1e-87 326.6 263 65.0
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.6e-87 325.9 324 57.4
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.4e-86 323.2 324 55.9
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 6.8e-86 321.6 312 57.7
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 6.8e-86 321.6 313 57.2
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 1.2e-85 320.9 289 59.2
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 2.6e-85 319.7 320 57.2
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 3.4e-85 319.3 312 56.4
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 5.8e-85 318.5 265 62.6
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 7.6e-85 318.2 272 61.4
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 7.6e-85 318.2 269 59.5
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 9.9e-85 317.8 291 59.5
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 9.9e-85 317.8 272 61.0
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 4.9e-84 315.5 322 56.2
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 6.4e-84 315.1 287 56.4
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 1.1e-83 314.3 296 56.8
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.6e-82 310.5 293 58.4
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 6.0e-82 308.5 264 60.6
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 1.7e-81 307.0 262 59.5
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 5.6e-80 302.0 259 57.9
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 1.2e-79 300.8 309 54.7
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 2.1e-79 300.1 261 57.5
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 2.8e-79 299.7 313 52.7
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 6.2e-79 298.5 303 54.8
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.8e-78 297.0 279 56.3
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.8e-78 297.0 278 55.8
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.4e-78 296.6 276 58.0
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 9.9e-77 291.2 280 54.3
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 3.8e-76 289.3 327 50.5
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 6.4e-76 288.5 330 50.6
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 6.4e-76 288.5 279 54.8
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 8.4e-76 288.1 274 57.7
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 7.8e-74 281.6 289 52.2
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 7.8e-74 281.6 388 45.1
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 3.0e-73 279.6 326 51.5
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 3.3e-72 276.2 261 57.1
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 1.8e-70 270.4 284 50.0
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 2.6e-69 266.5 265 55.5
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 3.4e-69 266.2 295 50.8
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 4.5e-69 265.8 261 52.9
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 7.6e-69 265.0 267 49.4
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 7.1e-67 258.5 239 61.1
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 9.3e-67 258.1 268 54.1
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 2.7e-66 256.5 260 48.5
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 3.5e-66 256.1 289 50.2
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 3.5e-66 256.1 282 51.1
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.5e-64 250.0 204 62.7
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 2.8e-63 246.5 285 46.3
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 1.3e-60 237.7 434 36.6
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 3.5e-58 229.6 262 48.5
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 7.9e-58 228.4 152 74.3
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 1.5e-56 224.2 200 55.5
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 6.9e-54 215.3 155 69.7
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.2e-53 214.5 131 76.3
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.4e-53 213.0 282 43.3
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.8e-53 212.2 262 46.6
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 1.3e-52 211.1 274 42.7
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.7e-52 210.7 151 70.2
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 2.1e-50 203.8 205 56.6
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 3.3e-48 196.4 259 42.5
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.3e-47 194.5 202 54.0
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 2.2e-44 183.7 154 64.9
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 1.9e-43 180.6 281 37.4
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 2.5e-43 180.3 291 41.2
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 8.8e-41 171.8 100 88.0
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.7e-39 167.5 286 38.8
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.1e-38 162.9 99 79.8
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 6.9e-38 162.2 219 43.8
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.0e-36 158.3 320 34.1
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 1.3e-36 157.9 175 45.7
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.2e-35 153.3 99 75.8
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 1.8e-33 147.5 131 56.5
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 5.1e-33 146.0 171 48.5
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 4.4e-32 142.9 102 74.5
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 2.4e-30 137.1 202 47.5
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 4.5e-29 132.9 87 70.1
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 5.9e-29 132.5 72 93.1
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 1.7e-28 131.0 139 52.5
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 3.7e-23 113.2 83 74.7
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.1e-22 111.7 155 49.0
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 5.3e-22 109.4 82 74.4
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 2.9e-20 103.6 135 49.6
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 2.3e-17 94.0 54 85.2
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-14 85.1 49 85.7
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 9.1e-14 82.0 61 75.4
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 2.2e-12 77.4 61 72.1
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 1.5e-11 74.7 175 32.6
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 2.5e-11 73.9 58 65.5
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 5.5e-11 72.8 77 54.5
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 1.2e-10 71.6 74 52.7
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 4.7e-10 69.7 86 45.3
arahy.Tifrunner.gnm1.ann1.M13D0Y Arachis hypogaea HOM05D005386 ORTHO05D006981 8.0e-10 68.9 42 83.3
Ciclev10029903m.g Citrus clementina HOM05D005386 ORTHO05D006981 9.8e-08 62.0 57 54.4
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 2.2e-07 60.8 89 33.7
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 4.8e-07 59.7 46 60.9
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 8.3e-07 58.9 161 28.0
arahy.Tifrunner.gnm1.ann1.X9D9S7 Arachis hypogaea HOM05D001287 ORTHO05D002418 1.4e-06 58.2 42 71.4
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 2.4e-06 57.4 149 28.9
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 2.4e-06 57.4 153 28.1
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 3.1e-06 57.0 149 28.2
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 3.1e-06 57.0 150 26.7
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 4.1e-06 56.6 153 27.5
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 4.1e-06 56.6 153 28.1
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 4.1e-06 56.6 163 27.0
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 4.1e-06 56.6 153 28.8
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 5.4e-06 56.2 153 28.8
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 5.4e-06 56.2 153 28.8
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 7.0e-06 55.8 153 26.8
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 9.1e-06 55.5 153 28.8
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 9.1e-06 55.5 174 27.6


User provided reference genes

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