Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E5X9TE Arachis hypogaea HOM05D006632 ORTHO05D008224 8.8e-125 450.3 226 100.0
arahy.Tifrunner.gnm1.ann1.UQJ0AM Arachis hypogaea HOM05D006632 ORTHO05D008224 7.5e-124 447.2 226 99.6
Glyma.05G058200 Glycine max HOM05D006632 ORTHO05D008224 5.6e-103 377.9 225 84.9
VMungo0251G2371 Vigna mungo HOM05D006632 ORTHO05D008224 2.0e-100 369.4 225 83.6
Phvul.003G219500 Phaseolus vulgaris HOM05D006632 ORTHO05D008224 8.3e-99 364.0 227 81.9
Lalb_Chr05g0225741 Lupinus albus HOM05D006632 ORTHO05D008224 7.1e-98 360.9 229 80.8
Psat4g070160 Pisum sativum HOM05D006632 ORTHO05D008224 9.2e-98 360.5 227 79.7
Lj4g0001078 Lotus japonicus HOM05D006632 ORTHO05D008224 1.2e-97 360.1 230 80.0
TPR.G37669 Trifolium pratense HOM05D006632 ORTHO05D008224 8.6e-96 354.0 227 78.4
Medtr4g101100 Medicago truncatula HOM05D006632 ORTHO05D008224 1.5e-95 353.2 237 76.8
Thecc.03G254100 Theobroma cacao HOM05D006632 ORTHO05D008224 2.6e-92 342.4 228 75.4
TWI81G0482 Tripterygium wilfordii HOM05D006632 ORTHO05D008224 6.4e-91 337.8 235 74.0
Cfa012746 Carpinus fangiana HOM05D006632 ORTHO05D008224 1.4e-90 336.7 226 74.3
Oeu062975.1 Olea europaea HOM05D006632 ORTHO05D008224 1.4e-90 336.7 229 75.5
CiPaw.11G152400 Carya illinoinensis HOM05D006632 ORTHO05D008224 4.1e-90 335.1 230 75.2
Gohir.A12G219900 Gossypium hirsutum HOM05D006632 ORTHO05D008224 2.7e-89 332.4 229 73.8
MELO3C013948.2 Cucumis melo HOM05D006632 ORTHO05D008224 4.6e-89 331.6 225 75.1
Gorai.008G238100 Gossypium raimondii HOM05D006632 ORTHO05D008224 4.6e-89 331.6 229 73.8
Gohir.D12G222100 Gossypium hirsutum HOM05D006632 ORTHO05D008224 6.0e-89 331.3 229 73.8
Cc08_g12700 Coffea canephora HOM05D006632 ORTHO05D008224 7.8e-89 330.9 234 71.8
Duzib205G0315 Durio zibethinus HOM05D006632 ORTHO05D008224 1.3e-88 330.1 227 72.7
Solyc08g007410.4 Solanum lycopersicum HOM05D006632 ORTHO05D008224 3.0e-88 328.9 233 70.0
Sopen08g003360 Solanum pennellii HOM05D006632 ORTHO05D008224 3.9e-88 328.6 233 70.8
Ciclev10022042m.g Citrus clementina HOM05D006632 ORTHO05D008224 6.6e-88 327.8 230 72.2
Sed0019633 Sechium edule HOM05D006632 ORTHO05D008224 1.5e-87 326.6 225 72.9
CANSAT21G1011 Cannabis sativa HOM05D006632 ORTHO05D008224 3.3e-87 325.5 229 72.9
Nitab4.5_0004059g0060 Nicotiana tabacum HOM05D006632 ORTHO05D008224 4.3e-87 325.1 233 70.8
ClCG10G002780 Citrullus lanatus HOM05D006632 ORTHO05D008224 5.6e-87 324.7 225 72.4
AL7G38450 Arabidopsis lyrata HOM05D006632 ORTHO05D008224 7.3e-87 324.3 223 72.6
Haze_07882 Corylus avellana HOM05D006632 ORTHO05D008224 9.6e-87 323.9 219 74.0
Aa31LG2G12620 Aethionema arabicum HOM05D006632 ORTHO05D008224 1.2e-86 323.6 222 72.5
Prupe.5G072600 Prunus persica HOM05D006632 ORTHO05D008224 1.2e-86 323.6 231 71.4
PGSC0003DMG400012506 Solanum tuberosum HOM05D006632 ORTHO05D008224 1.6e-86 323.2 229 70.3
Atru.chr9.1340 Acer truncatum HOM05D006632 ORTHO05D008224 2.1e-86 322.8 226 72.1
CARHR222910 Cardamine hirsuta HOM05D006632 ORTHO05D008224 2.8e-86 322.4 223 72.6
Migut.A00961 Erythranthe guttata HOM05D006632 ORTHO05D008224 2.8e-86 322.4 241 69.3
GSVIVG01001305001 Vitis vinifera HOM05D006632 ORTHO05D008224 2.8e-86 322.4 230 72.2
Lsat_1_v5_gn_6_91561 Lactuca sativa HOM05D006632 ORTHO05D008224 8.1e-86 320.9 227 70.9
Manes.01G079200 Manihot esculenta HOM05D006632 ORTHO05D008224 8.1e-86 320.9 237 70.5
RcHm_v2.0_Chr7g0202881 Rosa chinensis HOM05D006632 ORTHO05D008224 8.1e-86 320.9 229 71.2
Potri.008G135980 Populus trichocarpa HOM05D006632 ORTHO05D008224 1.4e-85 320.1 224 70.5
Carub.0007s2499 Capsella rubella HOM05D006632 ORTHO05D008224 1.8e-85 319.7 223 71.7
Lj2A215T22 Lonicera japonica HOM05D006632 ORTHO05D008224 3.1e-85 318.9 223 70.9
Actinidia05199 Actinidia chinensis HOM05D006632 ORTHO05D008224 4.0e-85 318.5 231 70.6
MSTRG.25531 Avicennia marina HOM05D006632 ORTHO05D008224 5.2e-85 318.2 231 72.3
Potri.003G111100 Populus trichocarpa HOM05D006632 ORTHO05D008224 8.9e-85 317.4 225 70.7
Nitab4.5_0001707g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.2e-84 317.0 244 66.8
A08p12540 Brassica napus HOM05D006632 ORTHO05D008224 2.0e-84 316.2 223 70.4
BraA08t33245Z Brassica rapa HOM05D006632 ORTHO05D008224 2.0e-84 316.2 223 70.4
Nitab4.5_0000312g0210 Nicotiana tabacum HOM05D006632 ORTHO05D008224 2.0e-84 316.2 234 70.1
CSS0044555 Camellia sinensis var. sinensis HOM05D006632 ORTHO05D008224 3.4e-84 315.5 236 70.8
Nn6g34002 Nelumbo nucifera HOM05D006632 ORTHO05D008224 4.4e-84 315.1 228 72.4
AT4G16510 Arabidopsis thaliana HOM05D006632 ORTHO05D008224 2.2e-83 312.8 223 70.4
ECA240G2825 Erigeron canadensis HOM05D006632 ORTHO05D008224 2.9e-83 312.4 225 68.4
Sp7g15070 Schrenkiella parvula HOM05D006632 ORTHO05D008224 2.9e-83 312.4 223 69.1
DCAR_027784 Daucus carota HOM05D006632 ORTHO05D008224 3.8e-83 312.0 233 68.7
Thhalv10026162m.g Eutrema salsugineum HOM05D006632 ORTHO05D008224 4.9e-83 311.6 223 70.0
BolC8t48376H Brassica oleracea HOM05D006632 ORTHO05D008224 8.4e-83 310.8 223 69.5
FAN18G2132 Fragaria x ananassa HOM05D006632 ORTHO05D008224 1.4e-82 310.1 224 70.1
Hma1.2p1_0916F.1_g236520 Hydrangea macrophylla HOM05D006632 ORTHO05D008224 1.4e-82 310.1 232 70.7
THA.LOC104814709 Tarenaya hassleriana HOM05D006632 ORTHO05D008224 1.4e-82 310.1 224 70.1
Rhsim07G0107100 Rhododendron simsii HOM05D006632 ORTHO05D008224 1.9e-82 309.7 230 69.6
CsaV3_3G002820 Cucumis sativus L. HOM05D006632 ORTHO05D008224 1.2e-81 307.0 223 69.5
PGR042G2887 Punica granatum HOM05D006632 ORTHO05D008224 2.1e-81 306.2 233 67.8
EL10Ac5g13049 Beta vulgaris HOM05D006632 ORTHO05D008224 1.0e-80 303.9 220 69.1
AUR62039953 Chenopodium quinoa HOM05D006632 ORTHO05D008224 1.3e-80 303.5 220 70.0
MD06G1061300 Malus domestica HOM05D006632 ORTHO05D008224 1.3e-80 303.5 231 67.5
CAN.G1227.10 Capsicum annuum HOM05D006632 ORTHO05D008224 1.7e-80 303.1 178 80.3
AUR62007500 Chenopodium quinoa HOM05D006632 ORTHO05D008224 3.0e-80 302.4 218 69.7
vmacro14091 Vaccinium macrocarpon HOM05D006632 ORTHO05D008224 3.0e-80 302.4 273 60.1
Ah.12g056690 Amaranthus hybridus HOM05D006632 ORTHO05D008224 6.6e-80 301.2 226 67.7
FAN04G0341 Fragaria x ananassa HOM05D006632 ORTHO05D008224 1.9e-79 299.7 231 67.5
PSO063G6697 Papaver somniferum HOM05D006632 ORTHO05D008224 1.9e-79 299.7 228 64.9
HanXRQChr03g0088651 Helianthus annuus HOM05D006632 ORTHO05D008224 3.3e-79 298.9 217 69.6
CDE02G1947 Ceratophyllum demersum HOM05D006632 ORTHO05D008224 4.3e-79 298.5 183 78.1
FAN08G0873 Fragaria x ananassa HOM05D006632 ORTHO05D008224 7.3e-79 297.7 231 66.7
PSO782G3692 Papaver somniferum HOM05D006632 ORTHO05D008224 9.6e-79 297.4 228 65.4
FAN13G0450 Fragaria x ananassa HOM05D006632 ORTHO05D008224 2.8e-78 295.8 249 63.5
Aqoxy5G03914 Aquilegia oxysepala HOM05D006632 ORTHO05D008224 3.6e-78 295.4 231 66.2
Sabra03G0077000 Salix brachista HOM05D006632 ORTHO05D008224 8.1e-78 294.3 266 59.0
Eucgr.E00435 Eucalyptus grandis HOM05D006632 ORTHO05D008224 1.1e-77 293.9 242 65.7
SGA_v2.0_scaffold120G32870 Striga asiatica HOM05D006632 ORTHO05D008224 1.8e-77 293.1 293 57.0
Rhsim07G0106500 Rhododendron simsii HOM05D006632 ORTHO05D008224 1.4e-74 283.5 297 54.2
unitig_27.g25096 Utricularia gibba HOM05D006632 ORTHO05D008224 2.7e-73 279.3 184 72.3
BcaC07g37993 Brassica carinata HOM05D006632 ORTHO05D008224 3.9e-72 275.4 197 70.6
HPP92_014478 Vanilla planifolia HOM05D006632 ORTHO05D008224 3.9e-72 275.4 230 60.9
Os02g0662200 Oryza sativa ssp. japonica HOM05D006632 ORTHO05D008224 5.6e-71 271.6 227 61.7
Zm00001eb249830 Zea mays HOM05D006632 ORTHO05D008224 4.8e-70 268.5 228 61.0
Peaxi162Scf00102g01151 Petunia axillaris HOM05D006632 ORTHO05D008224 1.5e-68 263.5 231 61.0
SEGI_31519 Sequoiadendron giganteum HOM05D006632 ORTHO05D008224 1.5e-68 263.5 227 59.5
Dinv21617 Davidia involucrata HOM05D006632 ORTHO05D008224 6.4e-67 258.1 226 61.5
MD00G1115100 Malus domestica HOM05D006632 ORTHO05D008224 1.6e-65 253.4 244 57.0
QL12p012693 Quercus lobata HOM05D006632 ORTHO05D008224 4.6e-65 251.9 187 72.2
Sc01g0008570 Simmondsia chinensis HOM05D006632 ORTHO05D008224 1.8e-64 250.0 160 73.8
SMO143G0241 Selaginella moellendorffii HOM05D006632 ORTHO05D008224 3.9e-64 248.8 188 61.2
Mapoly0121s0036 Marchantia polymorpha HOM05D006632 ORTHO05D008224 5.1e-64 248.4 184 65.2
Pp3c24_4050 Physcomitrium patens HOM05D006632 ORTHO05D008224 5.1e-64 248.4 189 63.5
Hund14588 Selenicereus undatus HOM05D006632 ORTHO05D008224 3.1e-61 239.2 376 41.0
Nitab4.5_0017825g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 4.5e-60 235.3 193 65.3
CBR_g26463 Chara braunii HOM05D006632 ORTHO05D008224 6.5e-59 231.5 185 60.5
DCAR_004945 Daucus carota HOM05D006632 ORTHO05D008224 6.5e-59 231.5 226 56.6
Ca_22220_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 9.0e-53 211.1 163 70.6
Ca_21955_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 2.6e-52 209.5 153 74.5
SalBow6G7145 Salvia bowleyana HOM05D006632 ORTHO05D008224 3.9e-48 195.7 156 67.9
Cre07.g338250 Chlamydomonas reinhardtii HOM05D006632 ORTHO05D008224 5.9e-44 181.8 194 46.4
ATR0564G418 Amborella trichopoda HOM05D006632 ORTHO05D008224 6.9e-37 158.3 164 56.7
C01p26240 Brassica napus HOM05D006632 ORTHO05D008224 2.9e-35 152.9 133 60.2
BolC1t02568H Brassica oleracea HOM05D006632 ORTHO05D008224 2.9e-35 152.9 133 60.2
PRCOL_00001140 Prasinoderma coloniale HOM05D006632 ORTHO05D008224 6.7e-32 141.7 218 37.2
MCO15G182 Micromonas commoda HOM05D006632 ORTHO05D008224 1.1e-31 141.0 165 44.2
Dinv39125 Davidia involucrata HOM05D006632 ORTHO05D008224 2.8e-30 136.3 145 53.8
BraA01t02010Z Brassica rapa HOM05D006632 ORTHO05D008224 1.5e-26 124.0 143 49.0
A01p20910 Brassica napus HOM05D006632 ORTHO05D008224 5.5e-26 122.1 143 49.0
AagrBONN_evm.TU.Sc2ySwM_117.1014 Anthoceros agrestis HOM05D006632 ORTHO05D008224 1.3e-22 110.9 157 43.3
Peaxi162Scf00002g00156 Petunia axillaris HOM05D006632 ORTHO05D008224 7.7e-20 101.7 82 62.2
Cpa.g.sc276.6 Carica papaya HOM05D006632 ORTHO05D008224 2.9e-19 99.8 104 58.7
Duzib068G0053 Durio zibethinus HOM05D006632 ORTHO05D008224 2.5e-18 96.7 54 79.6
FvH4_5g00080 Fragaria vesca HOM05D011292 ORTHO05D013599 2.7e-17 93.2 93 54.8
TAR636G0287 Trochodendron aralioides HOM05D006632 ORTHO05D008224 2.6e-15 86.7 100 58.0
DCAR_004944 Daucus carota HOM05D006632 ORTHO05D008224 5.7e-15 85.5 95 54.7
Potri.001G122501 Populus trichocarpa HOM05D006632 ORTHO05D008224 5.0e-11 72.4 52 61.5
Sabra01G0094400 Salix brachista HOM05D006632 ORTHO05D008224 1.2e-09 67.8 48 64.6


User provided reference genes

Program Settings