Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E5K2FZ Arachis hypogaea HOM05D005004 ORTHO05D006097 4.4e-101 371.3 191 100.0
arahy.Tifrunner.gnm1.ann1.8NC760 Arachis hypogaea HOM05D005004 ORTHO05D006097 1.4e-75 286.6 192 83.9
Lj1g0020740 Lotus japonicus HOM05D005004 ORTHO05D006097 3.1e-54 215.7 188 67.0
Glyma.13G153600 Glycine max HOM05D005004 ORTHO05D006097 2.0e-53 213.0 187 64.2
Lalb_Chr20g0111711 Lupinus albus HOM05D005004 ORTHO05D006097 7.6e-53 211.1 191 63.9
Medtr7g104600 Medicago truncatula HOM05D005004 ORTHO05D006097 1.3e-52 210.3 193 63.7
Lalb_Chr25g0288321 Lupinus albus HOM05D005004 ORTHO05D006097 1.6e-50 203.4 189 62.4
Psat3g033320 Pisum sativum HOM05D005004 ORTHO05D006097 6.0e-50 201.4 197 59.4
TWI53G1915 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 7.9e-50 201.1 189 58.7
QL07p039017 Quercus lobata HOM05D005004 ORTHO05D006097 1.3e-49 200.3 190 58.9
TWI77G0413 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 3.9e-49 198.7 189 58.7
Thecc.05G089000 Theobroma cacao HOM05D005004 ORTHO05D006097 8.7e-49 197.6 195 56.4
CiPaw.09G013900 Carya illinoinensis HOM05D005004 ORTHO05D006097 1.1e-48 197.2 194 57.7
COL.COLO4_29735 Corchorus olitorius HOM05D005004 ORTHO05D006097 1.1e-48 197.2 195 56.4
Duzib106G1905 Durio zibethinus HOM05D005004 ORTHO05D006097 1.1e-48 197.2 195 58.5
Lj1g0017616 Lotus japonicus HOM05D005004 ORTHO05D006097 1.5e-48 196.8 190 60.5
QL07p038766 Quercus lobata HOM05D005004 ORTHO05D006097 1.5e-48 196.8 189 57.1
Gohir.A01G138100 Gossypium hirsutum HOM05D005004 ORTHO05D006097 3.3e-48 195.7 191 57.1
TPR.G30035 Trifolium pratense HOM05D005004 ORTHO05D006097 3.3e-48 195.7 187 60.4
Haze_19610 Corylus avellana HOM05D005004 ORTHO05D006097 4.3e-48 195.3 195 57.4
Cpa.g.sc5.20 Carica papaya HOM05D005004 ORTHO05D006097 9.6e-48 194.1 193 55.4
THA.LOC104826944 Tarenaya hassleriana HOM05D005004 ORTHO05D006097 1.6e-47 193.4 197 57.4
Gorai.002G158400 Gossypium raimondii HOM05D005004 ORTHO05D006097 4.8e-47 191.8 195 57.4
Gorai.002G239900 Gossypium raimondii HOM05D005004 ORTHO05D006097 4.8e-47 191.8 191 56.0
ClCG03G001800 Citrullus lanatus HOM05D005004 ORTHO05D006097 1.1e-46 190.7 195 52.8
Gohir.D01G195700 Gossypium hirsutum HOM05D005004 ORTHO05D006097 1.1e-46 190.7 191 56.0
Eucgr.C01891 Eucalyptus grandis HOM05D005004 ORTHO05D006097 1.4e-46 190.3 190 55.8
Gohir.D01G127800 Gossypium hirsutum HOM05D005004 ORTHO05D006097 1.4e-46 190.3 195 56.9
Ciclev10012954m.g Citrus clementina HOM05D005004 ORTHO05D006097 1.8e-46 189.9 197 56.3
Eucgr.L03536 Eucalyptus grandis HOM05D005004 ORTHO05D006097 2.4e-46 189.5 185 56.2
BcaB05g21795 Brassica carinata HOM05D005004 ORTHO05D006097 4.1e-46 188.7 189 56.1
Gohir.A01G206300 Gossypium hirsutum HOM05D005004 ORTHO05D006097 4.1e-46 188.7 191 55.5
Carub.0006s0286 Capsella rubella HOM05D005004 ORTHO05D006097 1.2e-45 187.2 191 56.0
Thhalv10014896m.g Eutrema salsugineum HOM05D005004 ORTHO05D006097 1.5e-45 186.8 192 56.8
Sed0022281 Sechium edule HOM05D005004 ORTHO05D006097 1.5e-45 186.8 187 55.1
Eucgr.K02041 Eucalyptus grandis HOM05D005004 ORTHO05D006097 2.0e-45 186.4 185 55.7
CANSAT80G1737 Cannabis sativa HOM05D005004 ORTHO05D006097 4.5e-45 185.3 187 55.1
Nn6g34902 Nelumbo nucifera HOM05D005004 ORTHO05D006097 4.5e-45 185.3 189 52.9
AL6G13490 Arabidopsis lyrata HOM05D005004 ORTHO05D006097 2.9e-44 182.6 191 55.0
BolC2t06126H Brassica oleracea HOM05D005004 ORTHO05D006097 2.9e-44 182.6 191 53.4
BcaC06g32094 Brassica carinata HOM05D005004 ORTHO05D006097 3.8e-44 182.2 192 54.7
C09p73010 Brassica napus HOM05D005004 ORTHO05D006097 5.0e-44 181.8 192 54.7
BolC9t60036H Brassica oleracea HOM05D005004 ORTHO05D006097 5.0e-44 181.8 192 54.7
Manes.08G025200 Manihot esculenta HOM05D005004 ORTHO05D006097 8.5e-44 181.0 188 54.8
ClCG03G002740 Citrullus lanatus HOM05D005004 ORTHO05D006097 1.1e-43 180.6 188 56.4
CsaV3_1G033770 Cucumis sativus L. HOM05D005004 ORTHO05D006097 1.9e-43 179.9 187 53.5
MBI17_g08354_MAGBIO Magnolia biondii HOM05D005004 ORTHO05D006097 1.9e-43 179.9 188 52.1
C02p01610 Brassica napus HOM05D005004 ORTHO05D006097 2.5e-43 179.5 190 52.6
Atru.chr8.1540 Acer truncatum HOM05D005004 ORTHO05D006097 3.2e-43 179.1 195 52.8
MELO3C020686.2 Cucumis melo HOM05D005004 ORTHO05D006097 5.5e-43 178.3 188 54.8
CsaV3_1G013480 Cucumis sativus L. HOM05D005004 ORTHO05D006097 5.5e-43 178.3 188 54.8
Aa31LG1G21370 Aethionema arabicum HOM05D005004 ORTHO05D006097 7.2e-43 177.9 193 54.9
PGR142G4351 Punica granatum HOM05D005004 ORTHO05D006097 7.2e-43 177.9 190 54.2
Dinv21208 Davidia involucrata HOM05D005004 ORTHO05D006097 9.3e-43 177.6 185 52.4
GSVIVG01033842001 Vitis vinifera HOM05D005004 ORTHO05D006097 9.3e-43 177.6 191 51.3
Migut.L01778 Erythranthe guttata HOM05D005004 ORTHO05D006097 1.6e-42 176.8 189 55.6
Sp6g38820 Schrenkiella parvula HOM05D005004 ORTHO05D006097 1.6e-42 176.8 202 52.0
SGA_v2.0_scaffold184G39963 Striga asiatica HOM05D005004 ORTHO05D006097 1.6e-42 176.8 185 55.1
Dinv31686 Davidia involucrata HOM05D005004 ORTHO05D006097 2.1e-42 176.4 185 53.5
MD16G1269100 Malus domestica HOM05D005004 ORTHO05D006097 2.1e-42 176.4 187 54.5
AT5G03905 Arabidopsis thaliana HOM05D005004 ORTHO05D006097 2.7e-42 176.0 189 52.9
Actinidia07927 Actinidia chinensis HOM05D005004 ORTHO05D006097 3.6e-42 175.6 184 52.7
Nitab4.5_0000368g0180 Nicotiana tabacum HOM05D005004 ORTHO05D006097 3.6e-42 175.6 190 55.8
Sabra06G0064000 Salix brachista HOM05D005004 ORTHO05D006097 3.6e-42 175.6 189 52.4
TAR623G0616 Trochodendron aralioides HOM05D005004 ORTHO05D006097 4.6e-42 175.3 191 53.4
SalBow5G1155 Salvia bowleyana HOM05D005004 ORTHO05D006097 7.9e-42 174.5 192 53.6
TAR365G0253 Trochodendron aralioides HOM05D005004 ORTHO05D006097 1.0e-41 174.1 191 51.8
A10p32210 Brassica napus HOM05D005004 ORTHO05D006097 1.3e-41 173.7 194 52.1
BraA10t45264Z Brassica rapa HOM05D005004 ORTHO05D006097 1.3e-41 173.7 194 52.1
BcaC03g12976 Brassica carinata HOM05D005004 ORTHO05D006097 1.8e-41 173.3 189 51.9
CSS0031559 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 1.8e-41 173.3 200 50.0
Hma1.2p1_0232F.1_g097910 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 1.8e-41 173.3 185 53.5
MD06G1040300 Malus domestica HOM05D005004 ORTHO05D006097 1.8e-41 173.3 187 54.0
Aqoxy5G00209 Aquilegia oxysepala HOM05D005004 ORTHO05D006097 2.3e-41 172.9 184 52.7
CARHR209350 Cardamine hirsuta HOM05D005004 ORTHO05D006097 3.0e-41 172.6 191 52.4
Rhsim03G0075200 Rhododendron simsii HOM05D005004 ORTHO05D006097 3.0e-41 172.6 192 51.0
Sed0018976 Sechium edule HOM05D005004 ORTHO05D006097 3.0e-41 172.6 188 52.1
FvH4_6g18690 Fragaria vesca HOM05D005004 ORTHO05D006097 3.9e-41 172.2 188 54.8
FAN14G5527 Fragaria x ananassa HOM05D005004 ORTHO05D006097 3.9e-41 172.2 188 54.8
FAN05G0382 Fragaria x ananassa HOM05D005004 ORTHO05D006097 5.1e-41 171.8 190 55.3
FAN05G5799 Fragaria x ananassa HOM05D005004 ORTHO05D006097 5.1e-41 171.8 190 55.3
SGA_v2.0_scaffold35G14070 Striga asiatica HOM05D005004 ORTHO05D006097 6.7e-41 171.4 186 55.4
Potri.006G084300 Populus trichocarpa HOM05D005004 ORTHO05D006097 8.7e-41 171.0 190 50.5
FAN09G0264 Fragaria x ananassa HOM05D005004 ORTHO05D006097 1.5e-40 170.2 188 53.7
Nitab4.5_0003512g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 1.9e-40 169.9 203 50.2
Prupe.5G046500 Prunus persica HOM05D005004 ORTHO05D006097 1.9e-40 169.9 185 54.1
Solyc01g100410.3 Solanum lycopersicum HOM05D005004 ORTHO05D006097 1.9e-40 169.9 190 52.6
Sopen01g043930 Solanum pennellii HOM05D005004 ORTHO05D006097 4.3e-40 168.7 190 52.1
HanXRQChr15g0491011 Helianthus annuus HOM05D005004 ORTHO05D006097 7.4e-40 167.9 191 52.9
BraA02t04792Z Brassica rapa HOM05D005004 ORTHO05D006097 9.7e-40 167.5 191 49.7
FAN02G1574 Fragaria x ananassa HOM05D005004 ORTHO05D006097 1.6e-39 166.8 190 54.2
PGSC0003DMG403002803 Solanum tuberosum HOM05D005004 ORTHO05D006097 1.6e-39 166.8 190 51.6
Os08g0369700 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 2.2e-39 166.4 149 58.4
CAN.G1715.5 Capsicum annuum HOM05D005004 ORTHO05D006097 2.8e-39 166.0 188 52.1
HanXRQChr17g0554781 Helianthus annuus HOM05D005004 ORTHO05D006097 2.8e-39 166.0 188 52.1
RcHm_v2.0_Chr3g0473661 Rosa chinensis HOM05D005004 ORTHO05D006097 2.8e-39 166.0 188 53.2
Cfa016606 Carpinus fangiana HOM05D005004 ORTHO05D006097 6.3e-39 164.9 169 56.8
Sc20g0006290 Simmondsia chinensis HOM05D005004 ORTHO05D006097 6.3e-39 164.9 187 52.4
VMungo1215G1361 Vigna mungo HOM05D005004 ORTHO05D006097 1.1e-38 164.1 168 58.9
Actinidia05431 Actinidia chinensis HOM05D005004 ORTHO05D006097 1.4e-38 163.7 188 49.5
unitig_899.g15202 Utricularia gibba HOM05D005004 ORTHO05D006097 1.4e-38 163.7 188 52.7
Peaxi162Scf00673g00319 Petunia axillaris HOM05D005004 ORTHO05D006097 3.1e-38 162.5 192 52.6
Phvul.003G095500 Phaseolus vulgaris HOM05D005004 ORTHO05D006097 2.0e-37 159.8 166 56.6
MSTRG.10365 Avicennia marina HOM05D005004 ORTHO05D006097 5.9e-37 158.3 192 49.5
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 7.7e-37 157.9 193 50.3
CDE02G2337 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 7.7e-37 157.9 154 57.8
DCAR_009165 Daucus carota HOM05D005004 ORTHO05D006097 7.7e-37 157.9 188 50.5
Duzib093G1830 Durio zibethinus HOM05D005004 ORTHO05D006097 1.3e-36 157.1 175 52.6
HPP92_018556 Vanilla planifolia HOM05D005004 ORTHO05D006097 1.3e-36 157.1 189 48.7
Cc06_g05740 Coffea canephora HOM05D005004 ORTHO05D006097 8.5e-36 154.5 192 49.5
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 5.5e-35 151.8 108 71.3
CDE04G1264 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 2.1e-34 149.8 187 48.1
PSO384G4260 Papaver somniferum HOM05D005004 ORTHO05D006097 2.1e-34 149.8 185 49.7
AUR62028526 Chenopodium quinoa HOM05D005004 ORTHO05D006097 2.7e-34 149.4 111 68.5
PSO339G3768 Papaver somniferum HOM05D005004 ORTHO05D006097 1.0e-33 147.5 185 49.2
AUR62006181 Chenopodium quinoa HOM05D005004 ORTHO05D006097 5.1e-33 145.2 120 64.2
SEGI_14769 Sequoiadendron giganteum HOM05D005004 ORTHO05D006097 3.3e-32 142.5 109 67.0
Zm00001eb042730 Zea mays HOM05D005004 ORTHO05D006097 1.7e-31 140.2 189 45.5
CSS0009320 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 8.2e-31 137.9 169 47.9
ECA236G3187 Erigeron canadensis HOM05D005004 ORTHO05D006097 1.8e-30 136.7 107 66.4
Zm00001eb170730 Zea mays HOM05D005004 ORTHO05D006097 2.4e-30 136.3 168 50.6
Nitab4.5_0004873g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 5.3e-30 135.2 167 49.1
TAR369G1152 Trochodendron aralioides HOM05D005004 ORTHO05D006097 6.5e-28 128.3 114 62.3
Hund03985 Selenicereus undatus HOM05D005004 ORTHO05D006097 5.5e-27 125.2 174 47.7
CAN.G1164.37 Capsicum annuum HOM05D005004 ORTHO05D006097 1.2e-26 124.0 167 44.9
ATR0174G014 Amborella trichopoda HOM05D005004 ORTHO05D006097 1.6e-26 123.6 138 51.4
Aa31LG3G2670 Aethionema arabicum HOM05D005004 ORTHO05D006097 2.7e-26 122.9 154 47.4
AagrBONN_evm.TU.Sc2ySwM_228.4176 Anthoceros agrestis HOM05D005004 ORTHO05D006097 2.0e-24 116.7 147 43.5
Pp3c3_34710 Physcomitrium patens HOM05D005004 ORTHO05D006097 3.3e-24 115.9 113 53.1
SMO171G0092 Selaginella moellendorffii HOM05D005004 ORTHO05D006097 3.3e-24 115.9 104 54.8
EL10Ac7g16917 Beta vulgaris HOM05D005004 ORTHO05D006097 5.7e-24 115.2 91 65.9
Hma1.2p1_0580F.1_g182880 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 2.2e-23 113.2 101 58.4
Mapoly0089s0053 Marchantia polymorpha HOM05D005004 ORTHO05D006097 1.1e-22 110.9 147 44.9
Lj2A137T29 Lonicera japonica HOM05D005004 ORTHO05D006097 1.8e-22 110.2 94 62.8
CBR_g27757 Chara braunii HOM05D005004 ORTHO05D006097 3.1e-22 109.4 116 46.6
vmacro07408 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 5.3e-22 108.6 100 58.0
SalBow5G4790 Salvia bowleyana HOM05D005004 ORTHO05D006097 5.9e-21 105.1 86 65.1
MCO02G129 Micromonas commoda HOM05D005004 ORTHO05D006097 1.7e-20 103.6 109 46.8
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 9.4e-19 97.8 159 41.5
Cc06_g20090 Coffea canephora HOM05D005004 ORTHO05D006097 1.6e-18 97.1 62 74.2
Glyma.03G195800 Glycine max HOM05D005004 ORTHO05D006097 1.6e-18 97.1 131 47.3
Os08g0363800 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 1.0e-17 94.4 73 64.4
MSTRG.5844 Avicennia marina HOM05D005004 ORTHO05D006097 4.0e-17 92.4 124 46.8
Hma1.2p1_3639F.1_g337130 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 4.0e-17 92.4 113 50.4
vmacro08717 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 7.5e-16 88.2 128 41.4
Cre07.g349600 Chlamydomonas reinhardtii HOM05D005004 ORTHO05D006097 9.7e-16 87.8 108 40.7
PRCOL_00000026 Prasinoderma coloniale HOM05D005004 ORTHO05D006097 7.0e-14 81.6 124 39.5
Haze_27657 Corylus avellana HOM05D005004 ORTHO05D006097 5.0e-12 75.5 95 37.9
Hma1.2p1_0160F.1_g071250 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 5.5e-11 72.0 101 41.6
Pp3s30_920 Physcomitrium patens HOM05D002293 ORTHO05D006850 9.4e-11 71.2 146 33.6
Hma1.2p1_0235F.1_g098620 Hydrangea macrophylla HOM05D005004 ORTHO05D012020 6.8e-09 65.1 110 43.6
Pp3c2_12660 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.7e-07 60.5 108 35.2
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 3.7e-07 59.3 118 33.1
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 8.3e-07 58.2 90 36.7
Glyma.05G184700 Glycine max HOM05D002293 ORTHO05D006850 8.3e-07 58.2 107 35.5
Mapoly0063s0067 Marchantia polymorpha HOM05D002293 ORTHO05D006850 8.3e-07 58.2 109 32.1
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 1.1e-06 57.8 92 33.7
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 1.1e-06 57.8 90 36.7
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 1.1e-06 57.8 90 37.8
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 1.4e-06 57.4 90 35.6
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 1.8e-06 57.0 116 31.0
Pp3c14_20400 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.8e-06 57.0 110 34.5
Pp3c1_29460 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.8e-06 57.0 108 32.4
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 2.4e-06 56.6 93 33.3
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 2.4e-06 56.6 93 33.3
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 2.4e-06 56.6 92 33.7
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 3.1e-06 56.2 93 33.3
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 3.1e-06 56.2 90 33.3
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 3.1e-06 56.2 91 34.1
SEGI_15698 Sequoiadendron giganteum HOM05D002293 ORTHO05D006850 3.1e-06 56.2 112 33.0
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 3.1e-06 56.2 90 34.4
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 3.1e-06 56.2 113 31.9
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 5.4e-06 55.5 91 34.1
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 5.4e-06 55.5 91 34.1
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 5.4e-06 55.5 90 33.3
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 5.4e-06 55.5 90 34.4
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 5.4e-06 55.5 90 33.3
SMO144G0175 Selaginella moellendorffii HOM05D002293 ORTHO05D006850 5.4e-06 55.5 89 34.8
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 7.0e-06 55.1 90 34.4
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 7.0e-06 55.1 90 32.2
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 9.1e-06 54.7 90 33.3
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 9.1e-06 54.7 90 33.3


User provided reference genes

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