Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 0.0e+00 2184.1 1106 100.0
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 3.6e-147 526.9 1187 36.3
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 1.1e-146 525.4 1185 36.8
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.7e-144 518.1 1196 36.0
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 6.4e-144 516.2 1180 35.8
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 2.7e-142 510.8 1190 35.9
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 7.8e-142 509.2 1176 35.2
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 2.5e-140 504.2 1190 35.3
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.1e-139 501.1 1176 34.4
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 2.8e-139 500.7 1192 35.6
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 9.0e-138 495.7 1176 35.8
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 6.4e-136 489.6 1202 34.6
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 6.4e-136 489.6 1175 34.3
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 9.3e-135 485.7 1175 35.0
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.6e-134 485.0 1179 34.5
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 2.1e-134 484.6 1201 34.8
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 9.0e-114 416.0 1150 32.2
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 3.8e-112 410.6 1169 32.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 5.7e-108 396.7 1110 32.2
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 5.7e-76 290.4 608 36.7
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 6.6e-56 223.8 1295 26.7
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 5.2e-53 214.2 1290 25.9
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.9e-47 195.7 1340 24.4
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 6.2e-46 190.7 1278 25.1
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.9e-43 181.8 1299 24.9
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 2.4e-42 178.7 1273 25.6
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 3.5e-41 174.9 1344 24.3
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 3.5e-41 174.9 1317 25.8
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.6e-39 167.5 1300 24.3
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 3.6e-38 164.9 1250 24.3
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.6e-38 164.9 1309 24.6
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 4.7e-38 164.5 1316 25.5
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.1e-37 163.3 1309 24.1
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.4e-37 162.9 1305 24.6
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 2.0e-36 159.1 1305 24.8
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.6e-36 158.7 1277 24.9
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 4.4e-36 157.9 1289 23.5
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.9e-36 156.8 1289 23.7
Lalb_Chr14g0372311 Lupinus albus HOM05D004021 ORTHO05D003767 1.1e-34 153.3 668 27.7
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 2.4e-34 152.1 1278 23.6
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.4e-34 152.1 1241 23.9
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 3.2e-34 151.8 1305 24.1
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 5.4e-34 151.0 1259 25.7
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.3e-32 145.6 1329 23.8
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 8.7e-32 143.7 465 31.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 7.3e-31 140.6 1266 25.0
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 9.6e-31 140.2 1310 24.6
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.1e-30 139.0 1296 23.8
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.3e-29 134.4 1300 24.2
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.5e-28 132.9 1317 24.5
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 7.6e-28 130.6 784 27.0
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 7.6e-28 130.6 1296 23.6
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.2e-27 129.0 1207 22.9
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.4e-26 125.6 1230 22.6
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 7.1e-26 124.0 1081 23.6
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.1e-25 122.5 1198 23.1
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.7e-24 119.4 303 30.7
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.3e-24 119.0 1305 23.2
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 6.6e-24 117.5 1187 23.8
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 8.7e-24 117.1 1250 23.2
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.5e-23 116.3 415 26.7
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 5.6e-23 114.4 725 24.8
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 4.8e-22 111.3 1222 23.7
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.4e-21 109.8 1278 24.3
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.8e-21 109.4 1176 22.3
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.8e-21 109.4 1183 22.7
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.1e-21 108.6 1236 23.1
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.6e-20 105.5 1190 22.7
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 5.8e-20 104.4 442 26.9
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 5.8e-20 104.4 917 22.6
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.1e-18 100.1 1191 22.8
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 2.4e-18 99.0 1182 22.3
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.6e-17 96.3 79 53.2
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.5e-17 95.1 1245 22.7
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 3.0e-16 92.0 1169 22.2
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 6.7e-16 90.9 1079 23.1
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 1.5e-15 89.7 1203 22.5
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 5.6e-15 87.8 1281 21.9
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 9.6e-15 87.0 365 25.5
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.3e-14 86.7 1247 22.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.6e-14 86.3 733 22.1
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.8e-14 85.5 1195 21.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 2.8e-14 85.5 1139 22.2
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.8e-14 85.5 80 48.8
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 2.8e-14 85.5 1161 21.6
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 4.8e-14 84.7 80 48.8
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 6.2e-14 84.3 1169 22.4
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 1.1e-13 83.6 1273 22.0
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.8e-13 82.8 78 48.7
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.4e-13 82.4 1135 21.9
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 3.1e-13 82.0 1088 21.7
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 3.1e-13 82.0 1223 21.7
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.1e-13 82.0 1229 21.3
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 4.0e-13 81.6 1135 21.9
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 5.3e-13 81.3 95 41.1
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 5.3e-13 81.3 78 47.4
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 6.9e-13 80.9 1060 22.7
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 9.0e-13 80.5 1260 21.9
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 2.0e-12 79.3 1126 22.7
Phvul.008G216900 Phaseolus vulgaris HOM05D058389 ORTHO05D003767 2.0e-12 79.3 346 25.7
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 3.4e-12 78.6 185 31.9
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 4.5e-12 78.2 752 23.5
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 4.5e-12 78.2 752 23.5
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 5.8e-12 77.8 753 23.0
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 5.8e-12 77.8 80 47.5
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.6e-12 77.4 1227 22.1
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.0e-11 77.0 1153 21.2
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.3e-11 76.6 53 56.6
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.3e-11 76.6 192 31.8
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 1.3e-11 76.6 1265 23.6
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.7e-11 76.3 75 44.0
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.8e-11 75.1 1219 21.2
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.9e-11 74.7 179 29.6
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.1e-10 73.6 53 56.6
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.1e-10 73.6 62 51.6
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.1e-10 73.6 76 44.7
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.1e-10 73.6 1117 23.1
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.9e-10 72.8 95 41.1
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.9e-10 72.8 103 39.8
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.5e-10 72.4 1227 21.4
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 4.2e-10 71.6 90 40.0
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 4.2e-10 71.6 1237 22.6
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 5.5e-10 71.2 319 25.7
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.5e-10 71.2 86 41.9
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 7.1e-10 70.9 1130 21.0
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.1e-10 70.9 81 45.7
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.2e-09 70.1 105 40.0
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 2.1e-09 69.3 104 36.5
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 2.1e-09 69.3 1197 22.9
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 3.5e-09 68.6 85 41.2
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 3.5e-09 68.6 1218 22.0
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 4.6e-09 68.2 76 42.1
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 6.0e-09 67.8 1077 21.7
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 6.0e-09 67.8 1141 22.4
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 6.0e-09 67.8 77 46.8
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 1.0e-08 67.0 101 35.6
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 1.8e-08 66.2 96 38.5
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 6.7e-08 64.3 1007 20.9
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 6.7e-08 64.3 1135 21.4
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.1e-07 63.5 777 21.5
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 1.1e-07 63.5 1233 21.7
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.5e-07 63.2 80 40.0
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.9e-07 62.8 73 43.8
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 1.9e-07 62.8 83 33.7
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 2.5e-07 62.4 101 36.6
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 2.5e-07 62.4 67 49.3
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 2.5e-07 62.4 67 49.3
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 4.3e-07 61.6 703 23.2
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 5.7e-07 61.2 66 42.4
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 9.6e-07 60.5 1118 22.5
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.3e-06 60.1 105 34.3
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-06 60.1 422 22.7
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.6e-06 59.7 1094 22.8
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.6e-06 59.7 57 42.1
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 3.7e-06 58.5 1118 21.7
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 6.2e-06 57.8 352 23.0
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 6.2e-06 57.8 52 44.2


User provided reference genes

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