Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.5e-114 414.8 245 100.0
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.2e-111 406.8 245 98.0
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.5e-48 196.4 269 52.0
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 4.7e-47 192.2 258 50.4
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 1.8e-46 190.3 260 51.2
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 3.4e-45 186.0 278 48.2
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 6.4e-44 181.8 258 49.6
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.8e-43 180.3 268 48.1
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 2.0e-42 176.8 251 51.0
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.0e-42 176.8 258 48.4
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.3e-41 173.3 265 46.4
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 5.0e-41 172.2 268 46.6
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 1.5e-40 170.6 258 48.1
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.9e-40 170.2 285 44.2
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 5.6e-40 168.7 266 45.9
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.3e-40 168.3 265 46.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 9.5e-40 167.9 272 47.1
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 9.5e-40 167.9 265 46.4
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.2e-39 167.5 263 47.1
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.6e-39 167.2 271 44.3
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.1e-39 166.8 258 48.1
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 3.6e-39 166.0 246 47.6
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.0e-38 162.5 269 46.5
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.2e-38 162.2 247 46.6
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.2e-37 161.0 255 47.8
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.2e-37 161.0 274 44.9
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 3.4e-37 159.5 254 49.6
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 3.4e-37 159.5 250 49.6
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.4e-37 159.5 266 46.6
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 4.4e-37 159.1 268 44.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.8e-37 158.7 269 46.1
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.8e-37 158.7 271 46.5
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 5.8e-37 158.7 275 45.1
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 7.5e-37 158.3 262 45.4
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 7.5e-37 158.3 261 45.6
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.3e-36 157.5 260 45.0
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 2.2e-36 156.8 287 43.9
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.2e-36 156.8 257 46.7
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.9e-36 155.6 265 47.5
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 8.3e-36 154.8 269 48.0
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.1e-35 154.5 250 48.0
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 1.1e-35 154.5 259 45.6
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 1.4e-35 154.1 290 43.8
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 1.4e-35 154.1 265 43.4
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.4e-35 153.3 273 42.5
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 3.2e-35 152.9 270 44.4
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 3.2e-35 152.9 266 45.5
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 4.1e-35 152.5 268 44.0
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 7.0e-35 151.8 261 43.3
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.6e-34 150.6 271 46.1
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.0e-34 150.2 267 47.2
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.0e-34 150.2 254 44.9
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 3.5e-34 149.4 267 44.6
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 3.5e-34 149.4 254 46.5
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 4.6e-34 149.1 250 45.2
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 4.6e-34 149.1 250 45.2
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 4.6e-34 149.1 252 44.8
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 7.8e-34 148.3 183 53.6
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 7.8e-34 148.3 266 46.2
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 7.8e-34 148.3 264 45.8
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.0e-33 147.9 264 44.7
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 1.0e-33 147.9 268 44.0
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 1.3e-33 147.5 260 45.4
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.7e-33 147.1 268 44.0
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 3.0e-33 146.4 270 44.8
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.0e-33 146.4 254 46.1
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 3.9e-33 146.0 262 42.0
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 3.9e-33 146.0 268 43.3
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 5.0e-33 145.6 250 46.0
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 6.6e-33 145.2 267 43.1
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.5e-32 144.1 261 42.5
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 1.9e-32 143.7 267 42.3
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 3.3e-32 142.9 251 45.4
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 3.3e-32 142.9 251 45.4
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 3.3e-32 142.9 276 43.1
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 5.6e-32 142.1 265 45.3
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 9.5e-32 141.4 271 42.4
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.2e-31 141.0 269 42.0
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 2.1e-31 140.2 269 42.0
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.1e-31 140.2 204 46.6
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 8.1e-31 138.3 269 42.8
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.4e-30 137.5 271 42.4
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.4e-30 137.5 251 42.2
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.4e-30 137.5 272 44.1
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.8e-30 137.1 253 41.5
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.8e-30 137.1 253 41.5
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.8e-30 137.1 259 43.6
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.8e-30 137.1 263 44.9
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 2.3e-30 136.7 258 42.2
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 4.0e-30 136.0 269 42.4
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 8.9e-30 134.8 261 44.4
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 8.9e-30 134.8 269 40.5
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.2e-29 134.4 310 40.6
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.0e-29 133.7 253 43.9
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 3.4e-29 132.9 264 41.3
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 3.4e-29 132.9 236 44.1
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 4.4e-29 132.5 254 42.9
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.8e-29 132.1 252 40.9
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.8e-29 132.1 252 40.9
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 5.8e-29 132.1 269 39.8
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 7.5e-29 131.7 265 42.3
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.5e-29 131.7 259 41.3
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 7.5e-29 131.7 203 47.3
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 9.9e-29 131.3 256 40.2
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 1.3e-28 131.0 254 41.3
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-28 131.0 259 40.5
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.7e-28 130.6 254 42.9
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.2e-28 130.2 267 42.7
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.2e-28 130.2 236 42.8
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 3.7e-28 129.4 260 40.8
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 4.9e-28 129.0 262 42.7
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 4.9e-28 129.0 269 39.4
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 6.4e-28 128.6 227 42.7
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 8.3e-28 128.3 268 39.2
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 8.3e-28 128.3 254 43.3
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-27 127.9 153 52.9
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-27 127.9 250 40.4
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.4e-27 127.5 263 41.1
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-27 127.5 259 40.9
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.4e-27 127.5 270 41.1
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.9e-27 127.1 259 40.5
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.4e-27 126.7 262 42.7
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 3.2e-27 126.3 253 41.9
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 4.1e-27 125.9 260 40.4
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-27 125.9 260 40.4
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 9.2e-27 124.8 255 40.8
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-26 123.6 259 38.6
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 2.7e-26 123.2 310 36.1
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 2.7e-26 123.2 271 41.0
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 2.3e-25 120.2 251 40.6
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.9e-24 117.1 203 44.3
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 2.5e-24 116.7 257 38.5
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.3e-24 115.9 246 39.0
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 7.3e-24 115.2 277 39.7
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 6.2e-23 112.1 214 40.2
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 8.1e-23 111.7 193 44.6
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.1e-22 111.3 251 40.6
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.4e-22 110.9 211 42.7
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.4e-22 110.2 259 40.5
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 3.1e-22 109.8 265 39.2
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.5e-21 107.5 222 37.4
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.9e-20 103.2 251 37.1
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 7.1e-19 98.6 177 42.9
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 3.5e-18 96.3 257 37.4
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 8.7e-17 91.7 202 39.1
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.3e-16 89.4 245 35.1
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 9.6e-16 88.2 213 33.8
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 1.6e-15 87.4 235 33.2
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 2.1e-15 87.0 144 39.6
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 6.2e-15 85.5 267 36.7
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.8e-14 84.0 250 36.0
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 2.4e-14 83.6 247 33.6
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 2.4e-14 83.6 126 49.2
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.1e-14 83.2 252 33.3
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.0e-14 82.8 254 33.9
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 4.0e-14 82.8 254 34.3
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.0e-13 80.5 122 45.9
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 9.9e-13 78.2 247 32.0
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.2e-12 77.0 145 37.2
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.8e-12 76.3 246 30.9
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-11 74.3 226 32.3
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 7.1e-11 72.0 95 47.4
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.2e-10 71.2 125 42.4
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.9e-09 66.2 55 63.6
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 5.1e-09 65.9 251 31.1
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-08 64.7 250 30.8
Medtr7g007430 Medicago truncatula HOM05D000048 ORTHO05D003885 2.5e-08 63.5 97 51.5
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 9.6e-08 61.6 78 51.3
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.6e-07 60.8 202 34.2
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 2.1e-07 60.5 137 30.7
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.8e-06 57.4 102 38.2
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.4e-06 57.0 93 44.1
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 6.9e-06 55.5 136 39.7
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 9.0e-06 55.1 99 40.4


User provided reference genes

Program Settings