Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 0.0e+00 1713.7 887 100.0
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 0.0e+00 1201.8 850 79.1
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 9.7e-260 900.6 620 72.6
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.0e-253 880.6 620 72.1
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 3.0e-253 879.0 622 71.7
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 3.9e-253 878.6 618 71.5
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.6e-249 866.7 620 70.8
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.0e-249 866.3 615 71.7
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 7.7e-249 864.4 614 72.3
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 2.7e-246 855.9 620 71.1
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 6.1e-246 854.7 620 70.8
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.4e-242 843.6 621 68.9
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 2.4e-242 842.8 622 69.3
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.3e-216 757.3 621 61.7
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 6.6e-216 755.0 624 61.2
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 5.6e-215 751.9 623 62.4
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 4.7e-214 748.8 623 62.4
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 4.1e-210 735.7 624 61.1
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 3.3e-207 726.1 621 61.2
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.1e-205 721.1 621 60.4
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 5.2e-205 718.8 625 60.5
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.7e-203 713.8 626 59.6
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 2.4e-202 709.9 622 59.3
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.0e-200 704.5 620 58.4
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.3e-200 704.1 637 58.1
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 3.0e-200 703.0 622 60.0
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 8.6e-200 701.4 625 58.6
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.5e-199 699.9 627 58.5
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 3.3e-199 699.5 658 56.7
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.8e-198 696.4 618 58.7
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.1e-197 694.5 620 58.1
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.1e-197 694.5 616 58.4
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 5.2e-197 692.2 620 59.2
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 6.8e-197 691.8 625 57.8
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.2e-196 691.0 625 58.1
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.7e-195 687.2 561 63.3
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 4.9e-195 685.6 624 58.8
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 8.4e-195 684.9 626 56.9
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.2e-194 682.9 615 58.4
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 5.4e-194 682.2 629 56.0
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.2e-193 681.0 624 58.8
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 4.6e-193 679.1 617 56.6
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 4.6e-193 679.1 627 57.6
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 3.9e-192 676.0 623 57.5
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.9e-191 673.7 667 54.3
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 6.2e-190 668.7 621 57.5
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.4e-189 667.5 640 57.0
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 5.3e-189 665.6 625 55.8
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 1.2e-188 664.5 618 55.3
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.4e-186 656.8 624 56.1
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 5.4e-186 655.6 614 56.0
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 7.9e-185 651.7 607 55.2
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.6e-182 642.9 578 58.5
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 3.6e-182 642.9 638 54.9
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 5.8e-180 635.6 622 54.3
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 4.9e-179 632.5 633 53.7
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.4e-178 630.9 627 54.1
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.9e-178 630.6 618 53.9
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 2.4e-178 630.2 626 53.8
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 3.2e-178 629.8 627 53.9
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 4.2e-178 629.4 625 53.3
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 5.4e-178 629.0 622 54.3
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 7.1e-178 628.6 627 53.7
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 6.0e-177 625.5 637 53.1
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 7.9e-177 625.2 563 57.5
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 1.0e-176 624.8 624 52.9
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.8e-176 624.0 621 53.0
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.3e-176 623.6 616 53.7
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 3.9e-176 622.9 624 53.5
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.1e-176 622.5 648 54.2
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 4.3e-175 619.4 620 52.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 4.3e-175 619.4 619 55.1
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.6e-174 617.5 629 52.9
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.1e-173 614.8 618 51.6
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.4e-173 614.4 626 51.8
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.4e-173 613.6 620 52.4
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 6.9e-173 612.1 620 51.5
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 6.9e-173 612.1 620 51.5
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 9.0e-173 611.7 632 52.1
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.2e-172 611.3 481 64.4
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.0e-172 610.5 620 51.3
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.2e-171 607.1 617 52.8
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 3.8e-171 606.3 621 51.4
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 3.8e-171 606.3 621 51.4
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.8e-171 606.3 620 51.9
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 4.9e-171 605.9 637 51.5
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 8.4e-171 605.1 617 51.5
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.1e-170 604.7 623 53.1
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 2.5e-170 603.6 618 51.8
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 2.5e-170 603.6 619 52.0
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 4.2e-170 602.8 622 51.0
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 1.2e-169 601.3 619 52.0
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.6e-169 599.4 695 50.6
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 6.0e-169 599.0 618 51.6
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 3.3e-167 593.2 583 55.1
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 3.3e-167 593.2 572 55.8
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.6e-166 590.9 640 52.2
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 4.1e-165 586.3 656 48.8
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 1.2e-164 584.7 582 53.8
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.5e-164 584.3 627 51.2
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 7.6e-164 582.0 638 49.8
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 2.9e-163 580.1 607 54.2
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.9e-163 580.1 531 56.9
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 3.8e-163 579.7 643 51.0
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 9.3e-162 575.1 599 50.8
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.6e-161 574.3 513 59.8
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.0e-160 571.6 583 53.9
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 3.0e-160 570.1 621 52.0
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 6.7e-160 568.9 618 50.0
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 1.1e-159 568.2 558 54.5
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 1.9e-159 567.4 541 56.0
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 2.2e-158 563.9 473 58.4
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 4.8e-158 562.8 482 60.8
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.1e-157 561.6 640 50.0
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.4e-157 560.5 649 50.1
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 6.5e-155 552.4 476 58.6
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.6e-153 546.6 565 52.4
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 4.6e-153 546.2 580 51.6
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.5e-151 541.2 549 52.8
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 5.3e-149 532.7 521 54.5
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.0e-143 514.2 620 47.6
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.0e-143 514.2 528 53.2
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.5e-140 503.1 618 47.2
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 4.2e-138 496.5 526 53.4
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.8e-125 454.5 423 56.7
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.0e-124 451.1 353 70.0
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.0e-123 448.7 486 50.2
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.1e-122 445.3 623 43.8
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 6.1e-121 439.5 474 50.2
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 4.9e-118 429.9 623 42.7
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 4.1e-117 426.8 624 42.6
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.6e-116 424.9 704 40.3
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.7e-116 424.1 478 47.7
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.7e-116 424.1 478 47.7
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 6.8e-112 409.5 549 45.5
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.6e-108 398.3 620 40.8
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 1.9e-106 391.3 366 54.1
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.2e-103 382.1 509 45.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 9.6e-74 282.7 551 35.6
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.1e-73 281.6 509 38.1
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 6.0e-60 236.9 275 50.5
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 2.0e-55 221.9 440 32.7
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.0e-46 193.0 195 47.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.9e-42 178.7 124 64.5
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 5.7e-26 124.0 163 35.6
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 4.5e-23 114.4 64 81.2
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.0e-15 89.0 155 38.7
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 4.8e-09 67.8 127 37.8
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.2e-07 63.2 43 53.5
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-07 61.2 39 66.7
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 7.7e-07 60.5 53 62.3
SEGI_38081 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.8e-06 58.2 44 56.8
arahy.Tifrunner.gnm1.ann1.4X96Y3 Arachis hypogaea HOM05D050452 ORTHO05D086088 6.5e-06 57.4 89 44.9
arahy.Tifrunner.gnm1.ann1.E94TIA Arachis hypogaea HOM05D023695 ORTHO05D082601 8.5e-06 57.0 65 61.5


User provided reference genes

Program Settings