Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1906.3 990 100.0
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1884.0 1020 96.7
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1458.4 994 75.1
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1453.3 995 75.6
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 994 74.7
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1439.5 995 74.8
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1429.8 994 73.2
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1428.7 994 73.0
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1424.1 994 73.0
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1419.4 994 72.2
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1407.5 995 72.7
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1404.4 995 72.8
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1402.5 998 72.0
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1393.6 994 72.4
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1379.4 994 71.0
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1368.6 995 71.4
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1368.6 995 71.3
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1364.7 995 70.6
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1364.4 997 69.9
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1360.5 973 71.6
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1360.5 998 69.6
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1356.7 995 68.3
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1354.3 995 70.7
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1354.0 995 70.1
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1352.4 995 69.6
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1352.4 995 70.1
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1352.0 994 70.3
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1345.9 995 69.9
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1343.2 995 69.1
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1341.6 996 68.1
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1341.3 995 69.4
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1340.9 996 68.0
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1338.6 999 67.8
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1338.2 995 68.9
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1336.2 998 69.3
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1335.9 995 68.7
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1333.9 995 67.7
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1332.4 994 67.8
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1332.4 997 68.2
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1330.1 995 68.5
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1329.3 997 68.2
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1327.8 996 67.6
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1326.6 984 67.9
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1325.1 984 67.3
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1324.7 992 67.5
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1322.8 1020 67.4
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1320.1 999 67.4
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1319.3 996 67.2
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1318.9 1006 67.3
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1318.5 995 68.7
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1317.0 996 67.0
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1316.2 996 67.6
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1312.0 996 67.5
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1312.0 996 67.7
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1309.7 995 68.5
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1308.5 996 67.8
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1303.9 997 68.3
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1301.6 995 66.6
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1300.8 998 66.8
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1299.3 990 66.6
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1298.9 973 67.8
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1296.6 996 66.6
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1295.4 967 67.6
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1294.3 995 66.6
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1293.5 997 66.0
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1290.4 995 66.5
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1290.4 1079 62.6
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1290.0 1000 67.2
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1289.2 995 67.8
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1288.5 996 67.0
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1286.9 995 66.1
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1281.2 996 65.8
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1277.7 997 65.8
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1271.1 965 68.3
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1269.2 995 65.8
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1267.3 964 65.1
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1266.1 995 65.2
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1258.8 995 65.2
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1251.5 996 64.2
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1250.3 995 64.9
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1250.0 967 66.5
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1249.6 984 64.9
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1249.6 984 64.9
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1246.1 995 65.8
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1244.6 995 64.6
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1243.4 995 63.8
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1240.7 997 65.3
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1239.9 916 69.9
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1238.8 1008 63.5
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1226.8 896 69.0
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1221.1 996 63.7
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1218.8 995 63.6
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1218.8 996 63.5
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1211.8 996 63.6
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1203.0 1001 62.3
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1168.7 943 64.7
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1165.6 995 61.6
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1158.3 979 60.3
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1154.8 971 62.6
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1104.0 994 56.5
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1088.9 866 65.4
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1086.2 915 63.2
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 5.1e-302 1041.2 727 75.2
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 9.7e-301 1036.9 1001 56.7
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 3.4e-277 958.7 913 56.3
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.8e-275 953.0 995 50.8
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 2.3e-270 936.0 998 48.2
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 4.1e-267 925.2 1002 49.3
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 1.6e-266 923.3 1005 49.9
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 5.5e-264 914.8 1005 49.9
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 2.2e-260 902.9 1006 49.6
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.9e-248 863.2 846 55.4
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.6e-239 832.4 615 68.9
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 5.2e-238 828.6 609 69.5
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 1.2e-237 827.4 986 45.2
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.4e-235 819.7 600 69.2
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 2.8e-231 806.2 747 57.3
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.0e-225 787.7 808 51.5
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 9.6e-200 701.4 1082 37.2
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 2.1e-194 683.7 913 41.0
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 1.3e-159 568.2 428 66.8
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 2.0e-128 464.5 314 74.2
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 7.5e-128 462.6 359 67.7
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 3.0e-124 450.7 307 73.0
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.0e-116 425.6 1191 28.8
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.0e-84 319.3 265 60.4
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.0e-84 319.3 265 60.4
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 8.7e-76 289.7 1075 26.6
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.6e-53 215.7 239 47.7
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 3.7e-34 151.4 960 22.1
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 2.6e-27 128.6 116 64.7
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 7.8e-24 117.1 147 45.6
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 3.9e-23 114.8 109 51.4
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 2.6e-19 102.1 146 44.5
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 4.6e-16 91.3 88 56.8
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.8e-16 90.5 73 64.4


User provided reference genes

Program Settings