Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.6e-45 185.7 90 100.0
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 3.3e-38 161.4 77 100.0
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 3.3e-38 161.4 77 100.0
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 3.3e-38 161.4 77 100.0
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 3.3e-38 161.4 77 100.0
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 3.3e-38 161.4 77 100.0
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.1e-37 158.7 77 97.4
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.8e-37 158.3 77 98.7
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 2.8e-37 158.3 77 97.4
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-36 156.4 77 97.4
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 5.2e-36 154.1 77 96.1
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 5.2e-36 154.1 76 96.1
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 6.8e-36 153.7 77 96.1
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 8.9e-36 153.3 76 96.1
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 1.2e-35 152.9 76 94.7
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 2.0e-35 152.1 76 94.7
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 3.4e-35 151.4 77 94.8
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 9.8e-35 149.8 76 96.1
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 9.8e-35 149.8 74 95.9
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 1.7e-34 149.1 72 95.8
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 2.9e-34 148.3 74 93.2
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 4.9e-34 147.5 76 90.8
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 4.9e-34 147.5 76 93.4
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 4.9e-34 147.5 76 90.8
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 4.9e-34 147.5 76 90.8
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 4.9e-34 147.5 76 90.8
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 6.4e-34 147.1 76 90.8
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 6.4e-34 147.1 77 90.9
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 6.4e-34 147.1 76 90.8
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 1.4e-33 146.0 76 89.5
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.4e-33 146.0 74 93.2
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 1.9e-33 145.6 79 87.3
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.9e-33 145.6 76 89.5
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 2.4e-33 145.2 76 90.8
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 2.4e-33 145.2 74 93.2
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 2.4e-33 145.2 76 88.2
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 3.2e-33 144.8 76 89.5
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 3.2e-33 144.8 70 97.1
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 3.2e-33 144.8 78 85.9
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 3.2e-33 144.8 73 91.8
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 4.1e-33 144.4 76 89.5
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 4.1e-33 144.4 76 89.5
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 4.1e-33 144.4 76 88.2
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 4.1e-33 144.4 76 88.2
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 5.4e-33 144.1 79 87.3
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 5.4e-33 144.1 72 94.4
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 5.4e-33 144.1 70 95.7
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 5.4e-33 144.1 76 89.5
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 7.0e-33 143.7 77 87.0
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 7.0e-33 143.7 76 89.5
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 9.2e-33 143.3 72 93.1
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 9.2e-33 143.3 76 89.5
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 9.2e-33 143.3 74 87.8
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 9.2e-33 143.3 76 88.2
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.2e-32 142.9 74 87.8
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 1.2e-32 142.9 77 83.1
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 1.2e-32 142.9 78 84.6
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.2e-32 142.9 76 88.2
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 1.6e-32 142.5 74 86.5
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 1.6e-32 142.5 77 85.7
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 2.1e-32 142.1 72 91.7
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 2.1e-32 142.1 73 89.0
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 3.5e-32 141.4 72 91.7
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 3.5e-32 141.4 77 85.7
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 3.5e-32 141.4 72 91.7
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 3.5e-32 141.4 76 85.5
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 3.5e-32 141.4 76 85.5
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 3.5e-32 141.4 72 91.7
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 3.5e-32 141.4 76 86.8
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 4.6e-32 141.0 74 85.1
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 4.6e-32 141.0 72 87.5
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 4.6e-32 141.0 72 88.9
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 4.6e-32 141.0 77 85.7
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 4.6e-32 141.0 77 87.0
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 7.8e-32 140.2 77 85.7
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 7.8e-32 140.2 72 88.9
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 7.8e-32 140.2 72 88.9
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.0e-31 139.8 76 85.5
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 1.0e-31 139.8 72 86.1
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.7e-31 139.0 77 83.1
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.7e-31 139.0 76 82.9
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.7e-31 139.0 76 84.2
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 1.7e-31 139.0 72 88.9
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.7e-31 139.0 72 88.9
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.7e-31 139.0 72 88.9
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 1.7e-31 139.0 77 84.4
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 3.0e-31 138.3 72 86.1
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 3.9e-31 137.9 72 86.1
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 3.9e-31 137.9 72 86.1
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 3.9e-31 137.9 72 84.7
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 3.9e-31 137.9 72 86.1
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 3.9e-31 137.9 72 86.1
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 3.9e-31 137.9 71 90.1
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 6.6e-31 137.1 72 84.7
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 6.6e-31 137.1 77 81.8
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 8.6e-31 136.7 72 84.7
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 8.6e-31 136.7 72 84.7
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 8.6e-31 136.7 72 84.7
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 8.6e-31 136.7 72 84.7
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.1e-30 136.3 72 84.7
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.1e-30 136.3 74 82.4
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.1e-30 136.3 74 83.8
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.5e-30 136.0 72 87.5
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.9e-30 135.6 72 84.7
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.9e-30 135.6 72 84.7
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 1.9e-30 135.6 72 84.7
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 1.9e-30 135.6 72 84.7
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 1.9e-30 135.6 72 84.7
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 1.9e-30 135.6 72 83.3
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.5e-30 135.2 76 82.9
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 3.3e-30 134.8 72 86.1
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 4.3e-30 134.4 74 85.1
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 7.3e-30 133.7 77 79.2
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.2e-29 132.9 72 83.3
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.6e-29 132.5 76 80.3
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.6e-29 131.3 72 81.9
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 3.6e-29 131.3 96 69.8
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 4.7e-29 131.0 72 80.6
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 6.2e-29 130.6 70 85.7
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.4e-28 129.4 72 79.2
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.4e-28 129.4 72 79.2
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-28 129.4 72 79.2
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-28 129.4 72 79.2
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.4e-28 129.4 72 79.2
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.4e-28 129.4 72 79.2
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 4.0e-28 127.9 72 77.8
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 5.2e-28 127.5 72 77.8
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 5.2e-28 127.5 72 77.8
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 5.2e-28 127.5 72 77.8
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 5.2e-28 127.5 72 77.8
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 5.2e-28 127.5 72 77.8
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 5.2e-28 127.5 72 77.8
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 6.8e-28 127.1 72 77.8
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 9.9e-27 123.2 73 76.7
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.5e-22 109.4 69 69.6
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 4.3e-22 107.8 69 66.7
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 7.3e-22 107.1 72 66.7
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 3.4e-19 98.2 69 62.3
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 4.6e-16 87.8 42 92.9
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 4.0e-12 74.7 47 68.1
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 5.3e-12 74.3 54 51.9
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 1.9e-09 65.9 33 87.9
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-08 62.0 29 96.6
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 4.6e-08 61.2 29 89.7
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 7.8e-08 60.5 29 89.7
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.1e-06 56.6 26 96.2


User provided reference genes

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