Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DS9KFU Arachis hypogaea HOM05D004125 ORTHO05D004933 2.1e-86 322.4 173 100.0
arahy.Tifrunner.gnm1.ann1.SDZN59 Arachis hypogaea HOM05D004125 ORTHO05D004933 2.1e-86 322.4 173 100.0
Glyma.19G179500 Glycine max HOM05D004125 ORTHO05D004933 3.9e-64 248.4 157 72.6
VMungo1383G2095 Vigna mungo HOM05D004125 ORTHO05D004933 1.1e-63 246.9 155 72.9
Phvul.001G175500 Phaseolus vulgaris HOM05D004125 ORTHO05D004933 3.3e-63 245.4 154 72.7
Glyma.03G178800 Glycine max HOM05D004125 ORTHO05D004933 1.3e-62 243.4 157 71.3
Lj1g0007543 Lotus japonicus HOM05D004125 ORTHO05D004933 1.2e-57 226.9 154 72.1
Lalb_Chr20g0112841 Lupinus albus HOM05D004125 ORTHO05D004933 3.5e-57 225.3 162 66.7
Ciclev10012548m.g Citrus clementina HOM05D004125 ORTHO05D004933 1.5e-55 219.9 116 81.9
Ca_08833_v3 Cicer arietinum L. HOM05D004125 ORTHO05D004933 1.9e-55 219.5 148 68.9
Dinv35730 Davidia involucrata HOM05D004125 ORTHO05D004933 2.5e-55 219.2 119 80.7
Medtr7g100870 Medicago truncatula HOM05D004125 ORTHO05D004933 7.4e-55 217.6 158 68.4
MD12G1121900 Malus domestica HOM05D004125 ORTHO05D004933 1.6e-54 216.5 114 83.3
COL.COLO4_27059 Corchorus olitorius HOM05D004125 ORTHO05D004933 2.8e-54 215.7 115 79.1
Thecc.05G056000 Theobroma cacao HOM05D004125 ORTHO05D004933 2.8e-54 215.7 114 81.6
Atru.chr8.1894 Acer truncatum HOM05D004125 ORTHO05D004933 4.8e-54 214.9 116 79.3
Prupe.6G240600 Prunus persica HOM05D004125 ORTHO05D004933 4.8e-54 214.9 114 82.5
Gorai.009G419400 Gossypium raimondii HOM05D004125 ORTHO05D004933 6.2e-54 214.5 114 81.6
MD04G1102200 Malus domestica HOM05D004125 ORTHO05D004933 1.1e-53 213.8 114 80.7
Cc06_g03700 Coffea canephora HOM05D004125 ORTHO05D004933 1.4e-53 213.4 118 79.7
Gohir.D04G114800 Gossypium hirsutum HOM05D004125 ORTHO05D004933 2.4e-53 212.6 114 80.7
Manes.08G004600 Manihot esculenta HOM05D004125 ORTHO05D004933 2.4e-53 212.6 114 80.7
Gohir.A04G075700 Gossypium hirsutum HOM05D004125 ORTHO05D004933 5.3e-53 211.5 114 80.7
Manes.09G077179 Manihot esculenta HOM05D004125 ORTHO05D004933 6.9e-53 211.1 115 80.0
TWI74G1587 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 6.9e-53 211.1 114 80.7
Hma1.2p1_0614F.1_g189600 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 9.0e-53 210.7 117 76.9
TAR633G1040 Trochodendron aralioides HOM05D004125 ORTHO05D004933 1.5e-52 209.9 116 78.4
PGR004G0966 Punica granatum HOM05D004125 ORTHO05D004933 2.0e-52 209.5 114 79.8
Gohir.A01G216300 Gossypium hirsutum HOM05D004125 ORTHO05D004933 3.4e-52 208.8 114 78.9
Gohir.D01G205100 Gossypium hirsutum HOM05D004125 ORTHO05D004933 3.4e-52 208.8 114 78.9
CSS0018032 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 4.5e-52 208.4 114 80.7
TWI53G0971 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 4.5e-52 208.4 114 78.9
Dinv37266 Davidia involucrata HOM05D004125 ORTHO05D004933 7.6e-52 207.6 122 77.0
Lj2A109G40 Lonicera japonica HOM05D004125 ORTHO05D004933 7.6e-52 207.6 129 75.2
TPR.G18284 Trifolium pratense HOM05D004125 ORTHO05D004933 2.2e-51 206.1 118 77.1
Gorai.002G249400 Gossypium raimondii HOM05D004125 ORTHO05D004933 2.9e-51 205.7 114 78.1
CSS0038970 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 5.0e-51 204.9 118 78.0
Cfa017522 Carpinus fangiana HOM05D004125 ORTHO05D004933 5.0e-51 204.9 114 78.1
Thhalv10017172m.g Eutrema salsugineum HOM05D004125 ORTHO05D004933 5.0e-51 204.9 115 76.5
Duzib128G0675 Durio zibethinus HOM05D004125 ORTHO05D004933 6.5e-51 204.5 114 77.2
Sabra06G0102300 Salix brachista HOM05D004125 ORTHO05D004933 6.5e-51 204.5 114 78.1
Sp4g19430 Schrenkiella parvula HOM05D004125 ORTHO05D004933 1.1e-50 203.8 115 75.7
Aa31LG5G22400 Aethionema arabicum HOM05D004125 ORTHO05D004933 1.4e-50 203.4 160 59.4
Haze_20626 Corylus avellana HOM05D004125 ORTHO05D004933 2.5e-50 202.6 114 78.9
Lsat_1_v5_gn_6_30280 Lactuca sativa HOM05D004125 ORTHO05D004933 2.5e-50 202.6 120 74.2
TAR623G1581 Trochodendron aralioides HOM05D004125 ORTHO05D004933 2.5e-50 202.6 117 74.4
BraA03t11288Z Brassica rapa HOM05D004125 ORTHO05D004933 3.2e-50 202.2 115 76.5
BcaB01g03789 Brassica carinata HOM05D004125 ORTHO05D004933 4.2e-50 201.8 115 76.5
BcaB06g28978 Brassica carinata HOM05D004125 ORTHO05D004933 5.5e-50 201.4 115 74.8
BcaC01g05633 Brassica carinata HOM05D004125 ORTHO05D004933 5.5e-50 201.4 115 76.5
C03p24050 Brassica napus HOM05D004125 ORTHO05D004933 5.5e-50 201.4 115 76.5
BolC3t14795H Brassica oleracea HOM05D004125 ORTHO05D004933 5.5e-50 201.4 115 76.5
CANSAT80G2417 Cannabis sativa HOM05D004125 ORTHO05D004933 5.5e-50 201.4 114 78.1
Lj3C980T5 Lonicera japonica HOM05D004125 ORTHO05D004933 7.1e-50 201.1 119 75.6
THA.LOC104806497 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 7.1e-50 201.1 115 74.8
BolC4t28068H Brassica oleracea HOM05D004125 ORTHO05D004933 9.3e-50 200.7 115 74.8
CARHR131620 Cardamine hirsuta HOM05D004125 ORTHO05D004933 9.3e-50 200.7 116 76.7
Nn2g10707 Nelumbo nucifera HOM05D004125 ORTHO05D004933 9.3e-50 200.7 153 61.4
AT2G37110 Arabidopsis thaliana HOM05D004125 ORTHO05D004933 1.2e-49 200.3 115 74.8
SEGI_21681 Sequoiadendron giganteum HOM05D004125 ORTHO05D004933 1.2e-49 200.3 118 72.0
A03p20450 Brassica napus HOM05D004125 ORTHO05D004933 1.6e-49 199.9 115 75.7
HanXRQChr13g0399591 Helianthus annuus HOM05D004125 ORTHO05D004933 1.6e-49 199.9 117 73.5
CiPaw.10G136300 Carya illinoinensis HOM05D004125 ORTHO05D004933 2.7e-49 199.1 113 78.8
A04p28380 Brassica napus HOM05D004125 ORTHO05D004933 3.5e-49 198.7 115 73.9
C04p65690 Brassica napus HOM05D004125 ORTHO05D004933 3.5e-49 198.7 115 73.9
Carub.0004s1900 Capsella rubella HOM05D004125 ORTHO05D004933 3.5e-49 198.7 115 73.9
CiPaw.10G136500 Carya illinoinensis HOM05D004125 ORTHO05D004933 4.6e-49 198.4 112 79.5
AL4G33460 Arabidopsis lyrata HOM05D004125 ORTHO05D004933 1.0e-48 197.2 115 73.9
CiPaw.09G178600 Carya illinoinensis HOM05D004125 ORTHO05D004933 1.3e-48 196.8 114 77.2
MELO3C014254.2 Cucumis melo HOM05D004125 ORTHO05D004933 1.3e-48 196.8 115 73.9
CsaV3_6G039390 Cucumis sativus L. HOM05D004125 ORTHO05D004933 1.3e-48 196.8 115 73.9
TAR636G1871 Trochodendron aralioides HOM05D004125 ORTHO05D004933 1.3e-48 196.8 116 74.1
BcaC02g07548 Brassica carinata HOM05D004125 ORTHO05D004933 1.8e-48 196.4 115 73.0
BraA04t18316Z Brassica rapa HOM05D004125 ORTHO05D004933 1.8e-48 196.4 115 73.0
SalBow3G3732 Salvia bowleyana HOM05D004125 ORTHO05D004933 3.0e-48 195.7 117 75.2
Nitab4.5_0003871g0020 Nicotiana tabacum HOM05D004125 ORTHO05D004933 5.1e-48 194.9 118 69.5
Nitab4.5_0008568g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 5.1e-48 194.9 118 69.5
Rhsim04G0149200 Rhododendron simsii HOM05D004125 ORTHO05D004933 6.7e-48 194.5 119 75.6
vmacro08723 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 6.7e-48 194.5 119 74.8
Nn2g13030 Nelumbo nucifera HOM05D004125 ORTHO05D004933 8.7e-48 194.1 114 75.4
Oeu059982.1 Olea europaea HOM05D004125 ORTHO05D004933 8.7e-48 194.1 118 73.7
Duzib093G1421 Durio zibethinus HOM05D004125 ORTHO05D004933 1.1e-47 193.7 118 71.2
Sed0002474 Sechium edule HOM05D004125 ORTHO05D004933 1.5e-47 193.4 114 72.8
ECA233G4685 Erigeron canadensis HOM05D004125 ORTHO05D004933 1.9e-47 193.0 116 72.4
Sed0009991 Sechium edule HOM05D004125 ORTHO05D004933 1.9e-47 193.0 114 71.9
Aqoxy4G03230 Aquilegia oxysepala HOM05D004125 ORTHO05D004933 4.3e-47 191.8 119 70.6
Potri.016G087200 Populus trichocarpa HOM05D004125 ORTHO05D004933 5.7e-47 191.4 113 75.2
Sabra16G0093400 Salix brachista HOM05D004125 ORTHO05D004933 5.7e-47 191.4 117 75.2
THA.LOC104823453 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 5.7e-47 191.4 115 72.2
Duzib106G0069 Durio zibethinus HOM05D004125 ORTHO05D004933 9.7e-47 190.7 114 72.8
Psat0s1011g0040 Pisum sativum HOM05D004125 ORTHO05D004933 9.7e-47 190.7 102 81.4
QL04p031281 Quercus lobata HOM05D004125 ORTHO05D004933 9.7e-47 190.7 115 73.9
QL07p045037 Quercus lobata HOM05D004125 ORTHO05D004933 9.7e-47 190.7 115 73.9
Potri.006G130300 Populus trichocarpa HOM05D004125 ORTHO05D004933 1.3e-46 190.3 114 72.8
ClCG04G008880 Citrullus lanatus HOM05D004125 ORTHO05D004933 1.6e-46 189.9 107 74.8
HPP92_012053 Vanilla planifolia HOM05D004125 ORTHO05D004933 1.6e-46 189.9 117 67.5
Atru.chr12.53 Acer truncatum HOM05D004125 ORTHO05D004933 2.2e-46 189.5 118 72.9
Migut.J00424 Erythranthe guttata HOM05D004125 ORTHO05D004933 2.8e-46 189.1 116 72.4
Oeu001336.1 Olea europaea HOM05D004125 ORTHO05D004933 3.7e-46 188.7 120 69.2
Actinidia13097 Actinidia chinensis HOM05D004125 ORTHO05D004933 1.1e-45 187.2 112 75.0
PSO063G5409 Papaver somniferum HOM05D004125 ORTHO05D004933 1.1e-45 187.2 119 68.1
Sc07g0006290 Simmondsia chinensis HOM05D004125 ORTHO05D004933 1.1e-45 187.2 115 68.7
Solyc10g084260.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 1.1e-45 187.2 118 68.6
Sopen09g002360 Solanum pennellii HOM05D004125 ORTHO05D004933 1.1e-45 187.2 122 68.9
Sopen10g033700 Solanum pennellii HOM05D004125 ORTHO05D004933 1.1e-45 187.2 118 68.6
PGSC0003DMG400001744 Solanum tuberosum HOM05D004125 ORTHO05D004933 1.8e-45 186.4 122 68.9
Gohir.A11G324600 Gossypium hirsutum HOM05D004125 ORTHO05D004933 2.4e-45 186.0 115 68.7
Peaxi162Scf00472g00039 Petunia axillaris HOM05D004125 ORTHO05D004933 2.4e-45 186.0 113 71.7
RhsimUnG0115400 Rhododendron simsii HOM05D004125 ORTHO05D004933 2.4e-45 186.0 121 69.4
PGSC0003DMG400010481 Solanum tuberosum HOM05D004125 ORTHO05D004933 2.4e-45 186.0 118 67.8
PSO384G3223 Papaver somniferum HOM05D004125 ORTHO05D004933 3.1e-45 185.7 116 69.8
DCAR_017716 Daucus carota HOM05D004125 ORTHO05D004933 4.1e-45 185.3 115 72.2
FAN05G0570 Fragaria x ananassa HOM05D004125 ORTHO05D004933 4.1e-45 185.3 125 68.0
PSO339G6461 Papaver somniferum HOM05D004125 ORTHO05D004933 4.1e-45 185.3 116 69.8
CAN.G915.16 Capsicum annuum HOM05D004125 ORTHO05D004933 5.3e-45 184.9 119 66.4
Oeu014972.1 Olea europaea HOM05D004125 ORTHO05D004933 6.9e-45 184.5 123 70.7
Solyc09g007490.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 9.0e-45 184.1 121 66.1
FAN02G0333 Fragaria x ananassa HOM05D004125 ORTHO05D004933 1.2e-44 183.7 116 71.6
CDE07G0936 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 1.5e-44 183.3 115 68.7
FAN14G3382 Fragaria x ananassa HOM05D004125 ORTHO05D004933 2.6e-44 182.6 123 68.3
MSTRG.19144 Avicennia marina HOM05D004125 ORTHO05D004933 1.0e-43 180.6 115 73.9
Migut.L01669 Erythranthe guttata HOM05D004125 ORTHO05D004933 1.0e-43 180.6 118 67.8
Nitab4.5_0000669g0120 Nicotiana tabacum HOM05D004125 ORTHO05D004933 1.0e-43 180.6 118 70.3
RcHm_v2.0_Chr3g0469051 Rosa chinensis HOM05D004125 ORTHO05D004933 1.0e-43 180.6 120 67.5
SGA_v2.0_scaffold126G33910 Striga asiatica HOM05D004125 ORTHO05D004933 1.3e-43 180.3 119 70.6
Ah.15g092190 Amaranthus hybridus HOM05D004125 ORTHO05D004933 1.7e-43 179.9 108 75.0
CDE04G0632 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 2.9e-43 179.1 115 69.6
FvH4_6g15540 Fragaria vesca HOM05D004125 ORTHO05D004933 3.8e-43 178.7 120 68.3
Nitab4.5_0006156g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 3.8e-43 178.7 118 70.3
Duzib093G1540 Durio zibethinus HOM05D004125 ORTHO05D004933 5.0e-43 178.3 114 69.3
CAN.G1091.11 Capsicum annuum HOM05D004125 ORTHO05D004933 1.1e-42 177.2 117 67.5
Eucgr.A01169 Eucalyptus grandis HOM05D004125 ORTHO05D004933 1.4e-42 176.8 121 67.8
Peaxi162Scf00005g03811 Petunia axillaris HOM05D004125 ORTHO05D004933 1.4e-42 176.8 118 68.6
FAN09G3242 Fragaria x ananassa HOM05D004125 ORTHO05D004933 4.2e-42 175.3 116 70.7
Os01g0157900 Oryza sativa ssp. japonica HOM05D004125 ORTHO05D004933 4.2e-42 175.3 121 62.8
EL10Ac7g16513 Beta vulgaris HOM05D004125 ORTHO05D004933 5.5e-42 174.9 115 67.8
MSTRG.5726 Avicennia marina HOM05D004125 ORTHO05D004933 7.2e-42 174.5 118 69.5
Zm00001eb123690 Zea mays HOM05D004125 ORTHO05D004933 9.4e-42 174.1 127 61.4
PGR142G2082 Punica granatum HOM05D004125 ORTHO05D004933 6.1e-41 171.4 122 68.0
SGA_v2.0_scaffold94G28676 Striga asiatica HOM05D004125 ORTHO05D004933 7.9e-41 171.0 120 62.5
vmacro20050 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 6.7e-40 167.9 98 72.4
Hma1.2p1_0111F.1_g054010 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 2.8e-38 162.5 120 66.7
unitig_0.g689 Utricularia gibba HOM05D004125 ORTHO05D004933 6.3e-38 161.4 117 58.1
SalBow5G1492 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.8e-37 159.8 128 60.2
SalBow5G2572 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.8e-37 159.8 128 60.2
Cfa017523 Carpinus fangiana HOM05D004125 ORTHO05D004933 6.9e-37 157.9 113 65.5
AUR62040494 Chenopodium quinoa HOM05D004125 ORTHO05D004933 6.9e-37 157.9 105 68.6
Gorai.007G374200 Gossypium raimondii HOM05D004125 ORTHO05D004933 1.2e-36 157.1 95 71.6
Actinidia05264 Actinidia chinensis HOM05D004125 ORTHO05D004933 5.9e-36 154.8 92 76.1
SalBow5G0726 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.7e-35 153.3 116 61.2
DCAR_014971 Daucus carota HOM05D004125 ORTHO05D004933 7.9e-33 144.4 113 59.3
Gohir.D11G343850 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.7e-30 136.7 78 74.4
AagrBONN_evm.TU.Sc2ySwM_369.209 Anthoceros agrestis HOM05D004125 ORTHO05D004933 6.3e-30 134.8 111 55.9
PSO339G6532 Papaver somniferum HOM05D004125 ORTHO05D004933 7.7e-28 127.9 80 68.8
Pp3c2_28280 Physcomitrium patens HOM05D004125 ORTHO05D004933 3.8e-27 125.6 114 52.6
Mapoly0052s0073 Marchantia polymorpha HOM05D004125 ORTHO05D004933 7.2e-26 121.3 93 57.0
Pp3c19_5790 Physcomitrium patens HOM05D004125 ORTHO05D004933 2.3e-24 116.3 113 52.2
Pp3c21_3760 Physcomitrium patens HOM05D004125 ORTHO05D004933 2.9e-19 99.4 112 46.4
MBI15_g00075_MAGBIO Magnolia biondii HOM05D004125 ORTHO05D004933 2.0e-15 86.7 56 67.9
ATR0594G238 Amborella trichopoda HOM05D004125 ORTHO05D004933 9.8e-15 84.3 95 49.5
Lj2A109G39 Lonicera japonica HOM05D004125 ORTHO05D004933 5.9e-12 75.1 38 86.8
QL07p045063 Quercus lobata HOM05D004125 ORTHO05D004933 1.5e-10 70.5 69 52.2
THA.LOC104803233 Tarenaya hassleriana HOM05D000414 ORTHO05D000276 2.2e-06 56.6 111 30.6


User provided reference genes

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