Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.2e-121 439.9 225 100.0
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 5.9e-121 437.6 225 99.1
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 1.2e-116 423.3 225 93.3
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 1.4e-98 363.2 243 78.6
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 2.4e-98 362.5 225 77.3
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 7.0e-98 360.9 225 76.9
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.3e-96 356.7 225 76.4
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 1.9e-95 352.8 226 76.5
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 2.5e-95 352.4 225 74.2
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 75.1
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 4.0e-93 345.1 225 74.2
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 5.8e-92 341.3 232 73.3
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 2.2e-91 339.3 225 72.9
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 2.9e-91 339.0 225 71.6
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 72.0
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 4.6e-89 331.6 225 71.1
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 7.8e-89 330.9 225 69.8
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 5.0e-88 328.2 225 71.6
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 8.6e-88 327.4 225 69.8
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 69.8
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 69.8
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 69.8
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 1.5e-87 326.6 225 69.3
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.9e-87 326.2 225 69.8
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.9e-87 326.2 225 69.8
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 69.8
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 69.3
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 4.3e-87 325.1 225 71.6
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 5.6e-87 324.7 225 68.9
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 2.1e-86 322.8 225 68.9
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.6e-86 322.0 225 69.8
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 2.3e-85 319.3 225 68.0
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 2.3e-85 319.3 225 69.8
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.0e-85 318.5 225 68.0
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 8.9e-85 317.4 224 69.6
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.5e-84 316.6 225 68.4
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.0e-84 316.2 225 68.9
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.4e-84 315.5 225 68.0
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 3.4e-84 315.5 225 68.0
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.4e-84 315.1 225 68.4
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 4.4e-84 315.1 225 67.1
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 5.8e-84 314.7 225 68.0
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 5.8e-84 314.7 225 68.0
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 7.5e-84 314.3 225 67.6
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 7.5e-84 314.3 225 68.0
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 1.7e-83 313.2 225 67.1
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 2.9e-83 312.4 224 68.3
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 3.7e-83 312.0 225 67.1
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 3.7e-83 312.0 225 67.6
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 4.9e-83 311.6 225 68.4
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 4.9e-83 311.6 227 68.7
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 4.9e-83 311.6 223 66.4
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.1e-82 310.5 226 66.4
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.4e-82 310.1 226 68.6
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.4e-82 310.1 226 68.6
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 1.4e-82 310.1 225 67.6
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 4.1e-82 308.5 225 66.7
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 5.4e-82 308.1 225 67.6
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 1.2e-81 307.0 226 67.7
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.2e-81 307.0 225 64.9
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.2e-81 307.0 225 64.9
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.1e-81 306.2 225 67.6
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 2.1e-81 306.2 225 64.4
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 2.7e-81 305.8 225 64.4
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 3.5e-81 305.4 225 64.0
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 3.5e-81 305.4 279 57.7
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 6.0e-81 304.7 225 67.1
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 6.0e-81 304.7 225 65.8
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 6.0e-81 304.7 225 65.8
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 7.8e-81 304.3 225 65.8
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 1.0e-80 303.9 196 73.5
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.3e-80 303.5 225 66.7
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.3e-80 303.5 225 65.8
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 2.3e-80 302.8 225 63.6
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 3.0e-80 302.4 225 65.8
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 3.9e-80 302.0 225 66.2
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 3.9e-80 302.0 225 66.2
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 5.1e-80 301.6 225 64.9
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 5.1e-80 301.6 225 64.4
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 5.1e-80 301.6 225 66.7
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 8.6e-80 300.8 225 65.8
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.1e-79 300.4 225 66.7
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.5e-79 299.3 225 64.0
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 5.6e-79 298.1 225 64.9
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 5.6e-79 298.1 225 63.1
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 9.5e-79 297.4 225 65.3
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 2.8e-78 295.8 219 66.7
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 1.8e-77 293.1 226 63.7
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 2.3e-77 292.7 225 63.1
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 5.2e-77 291.6 225 62.2
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 8.9e-77 290.8 228 62.7
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 8.9e-77 290.8 208 68.8
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 3.4e-76 288.9 196 69.9
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 9.9e-76 287.3 260 58.1
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 2.2e-75 286.2 225 62.7
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 5.4e-74 281.6 266 55.3
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.7e-72 276.6 225 64.0
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 3.0e-72 275.8 225 61.3
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 2.1e-70 269.6 227 57.3
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 2.1e-70 269.6 227 56.8
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 3.6e-70 268.9 225 59.6
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 8.1e-70 267.7 225 58.2
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.4e-69 266.9 226 58.8
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.5e-68 263.5 219 60.3
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 1.7e-67 260.0 225 59.1
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 9.3e-66 254.2 225 54.2
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 6.0e-65 251.5 225 59.1
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.0e-64 250.8 227 54.6
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 2.3e-64 249.6 227 56.8
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 4.8e-62 241.9 177 65.5
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 2.4e-61 239.6 252 51.6
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 2.4e-61 239.6 252 51.6
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 2.6e-60 236.1 226 51.8
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 2.6e-60 236.1 208 56.7
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 9.9e-60 234.2 229 55.9
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 3.8e-59 232.3 225 56.0
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 6.4e-59 231.5 225 56.0
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 3.0e-56 222.6 174 62.6
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 4.8e-54 215.3 225 48.0
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.5e-52 210.3 249 49.0
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.0e-48 197.6 164 60.4
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 8.7e-48 194.5 225 47.6
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.1e-47 194.1 225 45.8
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 2.8e-46 189.5 225 46.2
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.8e-45 186.8 122 71.3
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 4.6e-41 172.2 227 42.3
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 2.3e-40 169.9 207 43.0
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 6.7e-40 168.3 227 41.9
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 1.7e-35 153.7 130 61.5
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-33 146.7 100 69.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.5e-33 146.0 100 69.0
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 3.7e-30 136.0 149 51.0
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 6.1e-25 118.6 150 45.3
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.2e-22 110.2 71 69.0
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 1.2e-17 94.4 79 57.0
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 2.1e-17 93.6 61 63.9
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 1.4e-16 90.9 122 46.7
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.0e-16 89.7 105 49.5
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.2e-14 83.6 51 70.6
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 8.2e-14 81.6 79 54.4
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.4e-13 80.1 51 66.7
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.4e-13 80.1 51 66.7
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 5.3e-13 79.0 51 66.7
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 8.5e-11 71.6 199 31.2
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 1.1e-10 71.2 37 86.5
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 3.6e-09 66.2 76 51.3
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.0e-08 64.7 51 62.7
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.4e-08 64.3 51 62.7
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 8.8e-08 61.6 51 58.8
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.7e-06 57.4 61 50.8


User provided reference genes

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