Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.0e-82 310.1 165 100.0
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 6.2e-27 124.8 84 85.7
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 6.2e-27 124.8 84 85.7
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 6.2e-27 124.8 84 85.7
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 6.0e-22 108.2 74 82.4
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 6.0e-22 108.2 75 84.0
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 6.0e-22 108.2 75 84.0
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 6.0e-22 108.2 75 84.0
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 6.0e-22 108.2 75 84.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 6.0e-22 108.2 79 79.7
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 7.9e-22 107.8 75 84.0
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 7.9e-22 107.8 75 84.0
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 7.9e-22 107.8 75 84.0
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 7.9e-22 107.8 75 84.0
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.3e-21 107.1 75 84.0
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 1.8e-21 106.7 75 82.7
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 3.0e-21 105.9 75 82.7
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 3.0e-21 105.9 127 59.8
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.9e-21 105.5 75 81.3
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 5.1e-21 105.1 75 80.0
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 6.7e-21 104.8 75 81.3
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 8.7e-21 104.4 127 59.8
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 8.7e-21 104.4 127 59.8
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-20 104.0 75 77.3
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 1.1e-20 104.0 75 82.7
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 1.5e-20 103.6 75 80.0
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 1.5e-20 103.6 75 80.0
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 1.5e-20 103.6 75 80.0
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-20 103.2 75 78.7
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 1.9e-20 103.2 75 78.7
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-20 103.2 75 78.7
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-20 103.2 75 78.7
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-20 103.2 75 78.7
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-20 103.2 75 78.7
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-20 103.2 75 78.7
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-20 103.2 75 78.7
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 1.9e-20 103.2 75 78.7
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 1.9e-20 103.2 80 71.2
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 2.5e-20 102.8 75 77.3
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 2.5e-20 102.8 75 77.3
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.3e-20 102.4 75 81.3
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 4.3e-20 102.1 75 78.7
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 5.6e-20 101.7 75 78.7
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 7.4e-20 101.3 73 79.5
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.6e-19 99.0 84 70.2
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 4.8e-19 98.6 75 76.0
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 4.8e-19 98.6 75 76.0
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 6.2e-19 98.2 75 76.0
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 6.2e-19 98.2 75 74.7
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 8.1e-19 97.8 75 74.7
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 8.1e-19 97.8 75 74.7
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.1e-18 95.9 75 74.7
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 6.9e-18 94.7 75 72.0
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.2e-17 94.0 69 81.2
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 3.4e-17 92.4 75 70.7
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 5.8e-17 91.7 75 70.7
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.7e-16 90.1 64 76.6
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.9e-16 89.4 75 70.7
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 3.8e-16 89.0 66 75.8
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 6.4e-16 88.2 75 66.7
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-15 86.7 64 73.4
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 4.2e-15 85.5 64 73.4
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 7.1e-15 84.7 62 74.2
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 6.0e-14 81.6 64 68.8
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 7.9e-14 81.3 67 65.7
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 7.9e-14 81.3 54 77.8
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 8.7e-13 77.8 63 69.8
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 1.1e-12 77.4 69 69.6
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 1.5e-12 77.0 75 66.7
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 1.5e-12 77.0 75 66.7
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 2.5e-12 76.3 58 69.0
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 1.3e-11 73.9 69 68.1
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 2.8e-11 72.8 52 73.1
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 2.8e-11 72.8 52 73.1
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 6.2e-11 71.6 75 64.0
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 1.1e-10 70.9 51 72.5
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.8e-10 70.1 49 79.6
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 3.1e-10 69.3 54 70.4
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 6.9e-10 68.2 80 56.2
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 9.0e-10 67.8 41 80.5
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 1.2e-09 67.4 51 70.6
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 1.2e-09 67.4 49 79.6
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 1.7e-08 63.5 59 64.4
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.7e-08 63.5 49 71.4
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 1.1e-07 60.8 46 73.9
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 7.9e-06 54.7 49 65.3


User provided reference genes

Program Settings