Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 7.4e-65 250.4 125 100.0
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 1.3e-61 239.6 127 96.1
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 2.2e-53 212.2 124 84.7
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 6.5e-53 210.7 124 84.7
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.1e-52 209.9 124 85.5
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 7.2e-52 207.2 124 83.1
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 1.4e-50 203.0 119 84.9
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 5.2e-50 201.1 124 82.3
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 2.0e-49 199.1 118 83.9
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 1.7e-48 196.1 117 82.9
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 4.8e-48 194.5 123 78.0
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.1e-47 193.4 116 81.9
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 4.1e-47 191.4 122 76.2
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 7.0e-47 190.7 124 77.4
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 2.0e-46 189.1 130 72.3
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 3.5e-46 188.3 122 75.4
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 5.9e-46 187.6 121 76.0
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 7.7e-46 187.2 122 75.4
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 7.7e-46 187.2 122 73.8
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.3e-45 186.4 121 76.0
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 6.5e-45 184.1 120 72.5
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 6.5e-45 184.1 120 72.5
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 6.5e-45 184.1 113 80.5
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 6.5e-45 184.1 122 73.8
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 6.5e-45 184.1 122 74.6
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 8.5e-45 183.7 117 77.8
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 8.5e-45 183.7 124 73.4
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 8.5e-45 183.7 118 75.4
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 8.5e-45 183.7 118 75.4
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 8.5e-45 183.7 123 71.5
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.1e-44 183.3 122 71.3
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.1e-44 183.3 122 73.8
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 1.9e-44 182.6 114 78.1
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 2.5e-44 182.2 122 72.1
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.5e-44 182.2 122 69.7
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 3.2e-44 181.8 122 72.1
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 3.2e-44 181.8 122 72.1
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.2e-44 181.4 114 78.9
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 5.5e-44 181.0 117 75.2
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 5.5e-44 181.0 122 74.6
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 7.2e-44 180.6 117 76.1
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 9.4e-44 180.3 121 74.4
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 9.4e-44 180.3 122 71.3
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 1.2e-43 179.9 123 71.5
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.6e-43 179.5 114 78.1
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 1.6e-43 179.5 114 78.1
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.6e-43 179.5 122 71.3
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 4.7e-43 177.9 121 73.6
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 4.7e-43 177.9 122 70.5
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 6.1e-43 177.6 122 73.8
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 6.1e-43 177.6 122 72.1
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 6.1e-43 177.6 118 73.7
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 8.0e-43 177.2 122 70.5
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 8.0e-43 177.2 120 72.5
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 1.4e-42 176.4 122 72.1
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.4e-42 176.4 122 69.7
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.4e-42 176.4 122 69.7
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.4e-42 176.4 122 70.5
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.8e-42 176.0 122 68.0
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.8e-42 176.0 122 70.5
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.8e-42 176.0 122 70.5
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 2.3e-42 175.6 116 75.9
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 3.0e-42 175.3 124 67.7
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 3.0e-42 175.3 123 67.5
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 3.0e-42 175.3 137 62.0
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.0e-42 175.3 122 68.9
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.0e-42 175.3 122 68.9
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 4.0e-42 174.9 122 68.0
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 4.0e-42 174.9 122 68.0
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 4.0e-42 174.9 122 68.0
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 4.0e-42 174.9 122 70.5
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 4.0e-42 174.9 116 73.3
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 6.8e-42 174.1 121 68.6
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 6.8e-42 174.1 121 68.6
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 6.8e-42 174.1 121 68.6
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 6.8e-42 174.1 121 68.6
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 6.8e-42 174.1 123 69.1
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 8.8e-42 173.7 112 75.9
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.5e-41 172.9 122 69.7
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.5e-41 172.9 122 67.2
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 2.0e-41 172.6 116 74.1
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 2.6e-41 172.2 121 67.8
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.6e-41 172.2 118 71.2
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.6e-41 172.2 118 71.2
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.4e-41 171.4 113 74.3
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.4e-41 171.4 113 74.3
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.3e-40 169.9 111 73.9
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 1.7e-40 169.5 116 71.6
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.7e-40 169.5 112 75.0
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 2.2e-40 169.1 121 66.9
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.2e-40 169.1 122 67.2
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 2.2e-40 169.1 118 69.5
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 2.2e-40 169.1 118 69.5
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 2.2e-40 169.1 122 69.7
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 3.7e-40 168.3 117 70.9
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 4.8e-40 167.9 116 72.4
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 6.3e-40 167.5 121 66.1
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 6.3e-40 167.5 129 61.2
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 1.1e-39 166.8 121 67.8
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 1.4e-39 166.4 122 64.8
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.4e-39 166.4 121 65.3
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 9.1e-39 163.7 119 69.7
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 2.0e-38 162.5 137 61.3
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 2.7e-38 162.2 122 65.6
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 5.9e-38 161.0 124 66.1
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 8.6e-37 157.1 121 64.5
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 4.7e-27 124.8 93 69.9
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.1e-23 113.6 88 65.9
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 4.6e-22 108.2 74 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 1.3e-21 106.7 109 49.5
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 1.3e-21 106.7 59 79.7
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 3.0e-21 105.5 109 49.5
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 3.9e-21 105.1 58 79.3
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 3.9e-21 105.1 58 79.3
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 5.0e-21 104.8 58 77.6
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 5.0e-21 104.8 57 78.9
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.2e-19 100.1 109 48.6
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 6.2e-19 97.8 70 70.0
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 3.1e-18 95.5 70 67.1
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 4.0e-18 95.1 57 77.2
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 5.2e-18 94.7 55 76.4
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 1.2e-17 93.6 57 68.4
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 2.6e-17 92.4 57 77.2
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.6e-17 92.4 58 74.1
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 3.4e-17 92.0 53 83.0
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 5.8e-17 91.3 86 57.0
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 5.8e-17 91.3 58 67.2
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 1.7e-16 89.7 78 61.5
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 3.7e-16 88.6 57 71.9
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 3.2e-15 85.5 53 75.5
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 5.4e-15 84.7 57 70.2
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 2.1e-14 82.8 109 41.3
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 1.0e-13 80.5 132 38.6
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 8.6e-13 77.4 51 70.6
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 8.6e-13 77.4 51 70.6
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 1.5e-12 76.6 51 70.6
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 2.5e-12 75.9 106 43.4
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 3.3e-12 75.5 47 74.5
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.3e-12 75.1 64 64.1
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 4.7e-11 71.6 60 53.3


User provided reference genes

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