Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DFZK61 Arachis hypogaea HOM05D003542 ORTHO05D038869 2.2e-58 228.8 117 100.0
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 5.0e-39 164.5 84 100.0
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 2.5e-38 162.2 84 98.8
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 2.6e-19 99.0 83 67.5
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 1.3e-18 96.7 83 68.7
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 6.4e-18 94.4 84 69.0
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 6.4e-18 94.4 83 65.1
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 1.1e-17 93.6 85 64.7
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 4.1e-17 91.7 82 65.9
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 7.0e-17 90.9 94 59.6
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 1.2e-16 90.1 83 62.7
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 1.2e-16 90.1 77 67.5
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 1.3e-15 86.7 82 58.5
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 1.9e-14 82.8 84 58.3
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 4.0e-12 75.1 84 52.4
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 5.2e-12 74.7 86 55.8
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 5.2e-12 74.7 86 55.8
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 4.4e-11 71.6 79 54.4
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 9.9e-11 70.5 77 54.5
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 4.9e-10 68.2 87 51.7
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 6.4e-10 67.8 89 51.7
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 6.4e-10 67.8 87 49.4
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 8.3e-10 67.4 75 61.3
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 1.1e-09 67.0 84 46.4
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 1.4e-09 66.6 76 55.3
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 2.4e-09 65.9 75 53.3
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 3.2e-09 65.5 84 45.2
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 3.2e-09 65.5 80 48.8
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 3.2e-09 65.5 75 53.3
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 4.1e-09 65.1 59 59.3
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 4.1e-09 65.1 96 45.8
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 4.1e-09 65.1 105 40.0
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 4.1e-09 65.1 77 54.5
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 5.4e-09 64.7 80 53.8
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 5.4e-09 64.7 54 63.0
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 7.1e-09 64.3 73 56.2
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 9.2e-09 63.9 99 46.5
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 9.2e-09 63.9 87 43.7
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 9.2e-09 63.9 71 52.1
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 1.2e-08 63.5 97 45.4
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 1.2e-08 63.5 108 40.7
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.6e-08 63.2 84 51.2
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.6e-08 63.2 77 53.2
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 1.6e-08 63.2 107 41.1
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 2.1e-08 62.8 86 47.7
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 2.1e-08 62.8 57 61.4
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 2.1e-08 62.8 84 47.6
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 2.1e-08 62.8 81 45.7
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 2.7e-08 62.4 94 45.7
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 2.7e-08 62.4 71 53.5
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 2.7e-08 62.4 80 50.0
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 2.7e-08 62.4 85 49.4
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 2.7e-08 62.4 95 43.2
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 3.5e-08 62.0 73 53.4
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 4.6e-08 61.6 66 54.5
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 4.6e-08 61.6 75 52.0
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 4.6e-08 61.6 93 44.1
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 6.0e-08 61.2 42 71.4
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 6.0e-08 61.2 83 45.8
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 7.8e-08 60.8 99 46.5
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 1.0e-07 60.5 85 45.9
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 1.0e-07 60.5 83 47.0
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 1.0e-07 60.5 51 54.9
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 1.0e-07 60.5 94 42.6
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 1.3e-07 60.1 68 51.5
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 1.7e-07 59.7 87 47.1
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 1.7e-07 59.7 87 47.1
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 1.7e-07 59.7 87 47.1
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 2.3e-07 59.3 62 53.2
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 2.3e-07 59.3 83 45.8
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 2.3e-07 59.3 85 45.9
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 3.0e-07 58.9 84 46.4
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 3.0e-07 58.9 87 47.1
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 3.0e-07 58.9 87 47.1
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 3.0e-07 58.9 87 47.1
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 3.0e-07 58.9 87 47.1
C04p13140 Brassica napus HOM05D003542 ORTHO05D004799 3.0e-07 58.9 87 47.1
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 3.0e-07 58.9 87 47.1
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 3.0e-07 58.9 73 54.8
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 3.0e-07 58.9 84 46.4
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 3.0e-07 58.9 76 56.6
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 3.0e-07 58.9 76 56.6
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 3.0e-07 58.9 84 53.6
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 3.0e-07 58.9 82 47.6
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 3.9e-07 58.5 72 50.0
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 3.9e-07 58.5 77 48.1
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 3.9e-07 58.5 85 45.9
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 3.9e-07 58.5 77 48.1
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 3.9e-07 58.5 77 48.1
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 3.9e-07 58.5 85 45.9
Lj8A8T29 Lonicera japonica HOM05D003542 ORTHO05D038869 3.9e-07 58.5 54 63.0
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 6.6e-07 57.8 74 43.2
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 6.6e-07 57.8 78 46.2
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 6.6e-07 57.8 107 42.1
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 1.1e-06 57.0 84 40.5
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.1e-06 57.0 84 40.5
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.1e-06 57.0 76 55.3
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 1.1e-06 57.0 46 60.9
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.5e-06 56.6 66 50.0
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 1.5e-06 56.6 78 46.2
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 1.5e-06 56.6 80 55.0
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.9e-06 56.2 84 40.5
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 3.3e-06 55.5 84 40.5
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 5.6e-06 54.7 63 47.6
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 5.6e-06 54.7 77 54.5


User provided reference genes

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