Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 5.3e-108 394.4 207 100.0
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.1e-68 263.8 142 97.9
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 5.4e-52 208.4 141 76.6
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 2.5e-49 199.5 141 75.2
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 4.2e-49 198.7 138 73.9
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 7.2e-49 198.0 134 76.1
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.2e-48 197.2 141 72.3
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 2.1e-48 196.4 119 82.4
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.8e-48 196.1 141 72.3
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 4.7e-48 195.3 142 71.8
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 8.0e-48 194.5 141 71.6
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.0e-47 194.1 141 70.9
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.8e-47 193.4 141 70.2
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 3.0e-47 192.6 141 70.9
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 8.9e-47 191.0 126 77.0
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 8.9e-47 191.0 115 80.0
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.9e-47 191.0 139 69.8
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 1.2e-46 190.7 138 70.3
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.5e-46 190.3 141 70.2
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 2.0e-46 189.9 120 76.7
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 4.4e-46 188.7 131 73.3
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 4.4e-46 188.7 122 76.2
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 5.7e-46 188.3 119 76.5
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 5.7e-46 188.3 139 70.5
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 5.7e-46 188.3 138 70.3
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 7.5e-46 188.0 122 76.2
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.3e-45 187.2 145 69.0
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 1.3e-45 187.2 141 70.2
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.7e-45 186.8 119 75.6
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 2.8e-45 186.0 122 75.4
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 3.7e-45 185.7 141 70.2
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 3.7e-45 185.7 137 70.1
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 4.9e-45 185.3 161 63.4
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 6.3e-45 184.9 127 70.9
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 6.3e-45 184.9 134 68.7
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 8.3e-45 184.5 151 64.2
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.1e-44 184.1 132 68.9
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.4e-44 183.7 118 76.3
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.4e-44 183.7 139 69.1
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.8e-44 183.3 119 74.8
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 2.4e-44 183.0 151 63.6
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.4e-44 183.0 126 72.2
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 5.4e-44 181.8 132 71.2
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 7.0e-44 181.4 126 71.4
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 7.0e-44 181.4 132 70.5
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.2e-43 180.6 138 68.8
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 2.0e-43 179.9 125 73.6
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.0e-43 179.9 138 68.1
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 2.7e-43 179.5 157 63.7
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 3.5e-43 179.1 140 65.7
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 3.5e-43 179.1 132 70.5
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.5e-43 178.7 125 71.2
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 4.5e-43 178.7 132 68.9
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 4.5e-43 178.7 114 77.2
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 4.5e-43 178.7 136 65.4
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 5.9e-43 178.3 120 74.2
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 7.8e-43 177.9 116 75.0
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 7.8e-43 177.9 143 63.6
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 7.8e-43 177.9 132 68.9
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 1.0e-42 177.6 139 64.0
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.0e-42 177.6 132 68.2
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.0e-42 177.6 125 71.2
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.3e-42 177.2 132 68.2
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.3e-42 177.2 126 72.2
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-42 177.2 119 71.4
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-42 177.2 119 71.4
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.7e-42 176.8 139 66.9
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 2.3e-42 176.4 122 72.1
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 2.3e-42 176.4 142 64.8
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.3e-42 176.4 119 70.6
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 5.0e-42 175.3 127 70.9
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 5.0e-42 175.3 116 75.0
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 5.0e-42 175.3 142 67.6
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 6.6e-42 174.9 133 67.7
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 8.6e-42 174.5 124 69.4
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.5e-41 173.7 132 68.2
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.5e-41 173.7 127 68.5
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.5e-41 173.7 139 62.6
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.9e-41 173.3 110 75.5
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.9e-41 173.3 124 68.5
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.9e-41 173.3 120 68.3
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.9e-41 173.3 120 68.3
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 5.6e-41 171.8 110 73.6
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 5.6e-41 171.8 118 72.9
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 5.6e-41 171.8 132 66.7
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 7.3e-41 171.4 115 73.9
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 1.2e-40 170.6 130 68.5
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 1.2e-40 170.6 114 73.7
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.2e-40 170.6 123 68.3
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 1.6e-40 170.2 133 64.7
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 2.1e-40 169.9 112 74.1
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 2.1e-40 169.9 112 74.1
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 2.1e-40 169.9 112 74.1
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 3.6e-40 169.1 115 72.2
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 3.6e-40 169.1 115 72.2
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 3.6e-40 169.1 115 72.2
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 3.6e-40 169.1 115 72.2
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 4.7e-40 168.7 176 55.1
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 1.4e-39 167.2 115 71.3
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.8e-39 166.8 124 65.3
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.8e-39 166.8 109 73.4
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 3.0e-39 166.0 115 71.3
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 5.2e-39 165.2 128 66.4
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 3.4e-38 162.5 110 72.7
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 7.5e-38 161.4 134 63.4
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 9.8e-38 161.0 109 78.0
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.3e-37 160.6 113 66.4
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 2.2e-37 159.8 136 64.0
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 7.0e-36 154.8 113 71.7
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 7.8e-35 151.4 115 68.7
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.0e-34 151.0 108 67.6
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 9.8e-30 134.4 115 58.3
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.9e-29 132.9 96 68.8
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 6.4e-29 131.7 96 67.7
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 7.0e-28 128.3 96 66.7
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.6e-27 125.6 144 52.1
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 3.6e-24 115.9 96 64.6
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.7e-21 107.1 78 71.8
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 7.8e-19 98.2 111 45.0
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 7.8e-19 98.2 65 69.2
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.3e-18 97.4 87 62.1
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.3e-18 96.7 108 45.4
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 4.3e-17 92.4 64 68.8
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 9.5e-17 91.3 132 38.6
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.2e-16 90.9 66 68.2
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 4.0e-15 85.9 113 38.1
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 8.4e-13 78.2 51 72.5
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 6.0e-11 72.0 54 61.1
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 9.6e-09 64.7 42 76.2
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 6.2e-08 62.0 42 73.8
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 2.4e-07 60.1 57 49.1
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 5.3e-07 58.9 115 36.5
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 9.0e-07 58.2 63 54.0


User provided reference genes

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