Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-237 825.9 405 100.0
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.4e-236 821.2 405 99.3
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 6.3e-222 773.9 405 93.8
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.8e-190 667.9 405 84.4
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 1.9e-186 656.0 405 81.7
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.7e-182 642.9 406 79.6
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 2.9e-179 632.1 409 79.2
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 5.2e-176 621.3 409 78.2
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 1.2e-175 620.2 405 78.5
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 3.7e-174 615.1 406 76.6
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.8e-173 612.8 406 76.4
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 9.5e-162 573.9 408 71.8
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.2e-161 573.5 404 72.3
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.6e-161 573.2 402 72.4
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.1e-160 570.5 407 71.3
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.1e-160 570.5 405 71.9
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 4.0e-160 568.5 404 72.3
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.9e-157 559.7 401 71.8
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.4e-157 558.1 406 70.7
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.7e-156 555.8 370 73.8
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 3.5e-156 555.4 401 71.8
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 6.0e-156 554.7 401 71.8
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 7.8e-156 554.3 412 70.1
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.7e-155 553.1 406 70.0
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 2.3e-155 552.7 406 70.4
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 3.9e-155 552.0 396 71.2
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 9.5e-154 547.4 373 73.7
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.6e-153 546.6 329 79.3
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 3.1e-152 542.3 405 70.4
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.8e-152 541.2 417 67.4
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 8.9e-152 540.8 401 68.8
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 4.4e-151 538.5 323 80.2
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 5.8e-151 538.1 416 68.5
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 5.8e-151 538.1 412 68.2
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 9.9e-151 537.3 359 74.4
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.3e-150 537.0 408 67.9
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 1.3e-150 537.0 415 68.9
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 3.7e-150 535.4 422 67.1
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 6.4e-150 534.6 415 67.2
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 8.3e-150 534.3 335 79.4
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.1e-149 533.9 417 66.2
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 3.2e-149 532.3 343 76.1
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 1.2e-148 530.4 339 77.6
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.6e-148 530.0 382 71.5
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 6.6e-147 524.6 407 65.4
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 8.6e-147 524.2 347 71.5
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 2.5e-146 522.7 322 77.6
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.5e-146 522.7 333 77.2
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.6e-145 520.0 375 69.1
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 4.7e-145 518.5 403 65.8
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 6.2e-145 518.1 392 67.6
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 6.8e-144 514.6 296 81.4
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.5e-143 513.5 383 68.4
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.6e-143 512.7 333 73.3
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 3.4e-143 512.3 378 68.8
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.7e-142 510.0 378 68.8
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 2.9e-142 509.2 408 65.4
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.8e-142 508.8 407 65.4
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 9.2e-141 504.2 367 68.7
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 9.2e-141 504.2 405 64.2
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.2e-140 503.8 407 64.9
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.2e-140 503.8 331 71.9
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 6.0e-140 501.5 406 64.5
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 7.8e-140 501.1 377 68.2
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.0e-139 500.7 409 64.1
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.7e-139 500.0 407 64.1
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.5e-138 496.9 408 64.0
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 3.3e-138 495.7 408 63.7
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.6e-137 493.4 410 64.1
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 2.1e-137 493.0 422 62.1
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 4.7e-137 491.9 411 62.8
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.1e-136 490.7 410 65.6
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.8e-136 490.0 306 76.1
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 3.1e-136 489.2 306 76.1
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 3.1e-136 489.2 306 76.1
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 4.0e-136 488.8 409 64.1
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 6.9e-136 488.0 262 92.7
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 6.9e-136 488.0 394 65.2
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 4.4e-135 485.3 424 61.3
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 9.9e-135 484.2 403 63.3
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 6.4e-134 481.5 382 64.1
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 1.1e-133 480.7 403 62.5
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.4e-133 480.3 385 62.6
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 9.3e-133 477.6 418 60.5
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.3e-130 469.2 328 69.5
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 3.3e-130 469.2 258 86.0
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 4.0e-128 462.2 385 63.1
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 6.9e-128 461.5 353 69.1
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 5.8e-127 458.4 293 71.0
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 2.2e-126 456.4 308 71.1
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 2.9e-126 456.1 375 64.0
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.4e-125 453.8 345 65.5
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 3.2e-125 452.6 388 59.8
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 7.1e-125 451.4 338 69.2
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.0e-123 447.6 356 66.0
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.0e-123 447.6 356 66.0
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.0e-123 447.6 356 66.0
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 1.5e-122 443.7 291 69.8
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.5e-122 443.7 295 69.2
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 3.3e-122 442.6 295 71.2
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 4.0e-120 435.6 243 85.2
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 5.3e-120 435.3 245 84.9
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.2e-119 434.1 428 55.8
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 5.8e-119 431.8 331 66.5
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.7e-118 430.3 395 61.5
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.4e-117 427.2 389 57.6
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 2.4e-117 426.4 311 69.1
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.3e-115 420.6 392 55.1
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.5e-114 417.2 335 60.3
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 5.6e-114 415.2 235 84.3
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.6e-114 414.5 338 60.1
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.6e-113 413.7 408 55.9
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 5.3e-112 408.7 332 65.4
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.1e-109 401.0 335 59.1
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 3.0e-107 392.9 445 51.9
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 2.8e-105 386.3 215 86.0
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.4e-104 383.3 251 74.9
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 1.5e-103 380.6 286 67.8
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 3.4e-103 379.4 256 73.8
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 4.5e-103 379.0 215 85.1
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.6e-103 378.3 390 52.1
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.0e-99 366.3 354 58.5
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 8.8e-99 364.8 366 58.2
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 1.5e-98 364.0 220 81.4
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 5.7e-98 362.1 305 58.4
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 5.3e-96 355.5 368 50.0
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 2.0e-95 353.6 288 61.1
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 6.1e-92 342.0 304 55.3
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.7e-89 334.0 173 93.6
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 3.4e-87 326.2 295 61.7
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.5e-82 310.8 204 71.1
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 2.0e-79 300.4 159 86.2
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 4.5e-79 299.3 350 49.7
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 5.0e-78 295.8 301 56.5
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.2e-77 292.7 195 75.9
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 2.7e-76 290.0 316 52.2
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 6.7e-75 285.4 158 82.9
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 1.2e-74 284.6 215 64.7
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.0e-74 283.9 274 56.2
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 2.8e-73 280.0 255 63.1
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 4.8e-73 279.3 284 52.5
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 3.5e-71 273.1 256 59.4
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 4.7e-68 262.7 200 65.0
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 4.0e-67 259.6 238 57.1
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.2e-66 258.1 283 45.6
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 7.5e-66 255.4 154 76.0
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 2.4e-64 250.4 174 66.7
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 5.0e-62 242.7 137 83.2
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.5e-61 239.2 241 56.8
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 5.2e-59 232.6 148 72.3
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.0e-58 230.7 273 45.4
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 1.3e-57 228.0 178 65.2
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 2.3e-54 217.2 212 57.1
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 8.0e-52 208.8 182 58.8
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.0e-51 208.4 297 43.8
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 5.8e-50 202.6 200 57.5
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 4.1e-48 196.4 193 57.5
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.0e-48 195.7 172 56.4
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 7.0e-48 195.7 159 64.8
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 1.9e-45 187.6 174 52.9
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 7.5e-42 175.6 119 69.7
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.7e-41 174.5 187 53.5
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.7e-41 174.5 403 34.0
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 8.6e-38 162.2 182 49.5
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 2.1e-31 141.0 174 50.6
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.9e-30 136.7 79 75.9
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.5e-29 134.8 72 91.7
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.1e-27 128.6 146 45.9
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.0e-27 126.7 70 85.7
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 8.4e-25 119.0 102 56.9
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.8e-19 101.3 52 84.6
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 5.3e-19 99.8 152 45.4
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 2.4e-16 90.9 159 42.1
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.3e-14 85.1 55 70.9
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.1e-14 83.2 149 35.6
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 8.7e-14 82.4 56 69.6
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 2.5e-13 80.9 74 54.1
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 4.8e-12 76.6 152 36.8
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 4.8e-12 76.6 43 86.0
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.1e-11 75.5 45 73.3
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.8e-11 74.7 146 35.6
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 3.2e-08 63.9 48 64.6
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.2e-07 62.0 41 75.6
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 6.0e-07 59.7 261 29.5
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 1.0e-06 58.9 251 27.9
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.8e-06 58.2 172 30.2


User provided reference genes

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