Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 3747.2 1893 100.0
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 3168.3 1898 84.6
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 3141.7 1900 84.1
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 3140.9 1898 83.4
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 3125.1 1900 83.7
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 3123.6 1899 83.4
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 3118.2 1896 83.4
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 3108.5 1898 83.4
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 3085.0 1898 82.5
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 3060.4 1899 81.9
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 3000.3 1841 83.1
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2863.2 1935 76.5
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2768.8 1520 93.1
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2747.2 1902 73.7
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2746.1 1902 73.0
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2734.9 1900 72.6
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2725.7 1901 72.7
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2723.3 1903 73.0
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2711.0 1903 71.9
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2709.1 1904 72.7
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2707.2 1906 72.1
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2697.9 1903 71.6
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2697.2 1903 71.5
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2694.1 1907 71.5
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2693.7 1902 72.2
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2689.4 1902 71.3
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2686.0 1861 73.8
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2685.6 1903 71.5
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2685.2 1903 71.3
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2684.4 1902 71.4
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2679.0 1848 73.1
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2675.6 1886 71.5
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2666.0 1900 71.4
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2659.4 1901 70.6
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2643.2 1904 70.5
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2634.8 1902 70.2
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2633.6 1915 70.0
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2622.0 1941 71.0
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2613.6 1886 70.5
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2612.0 1916 69.9
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2611.3 2060 65.5
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2608.6 1895 69.4
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2594.7 1597 82.7
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2592.0 1907 68.8
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2587.0 1897 69.0
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2585.1 1840 71.0
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2585.1 2008 67.1
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2584.7 1898 69.0
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2583.5 1901 69.4
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2576.6 1895 68.8
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2566.6 1895 68.3
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2527.7 1901 67.5
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2527.3 1901 67.5
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2519.6 1900 67.2
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2518.4 1904 67.1
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2508.4 1905 67.1
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2502.6 1903 66.5
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2495.7 1900 67.0
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2491.8 1903 66.3
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2491.5 1903 66.3
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2489.5 1903 66.3
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2486.4 1902 66.5
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2485.7 1899 66.1
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2485.7 1903 66.1
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2485.3 1904 66.2
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2484.1 1757 71.8
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2483.4 1908 66.3
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2483.0 1903 66.1
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2480.3 1903 66.1
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2477.2 1903 66.1
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2473.7 1901 66.0
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2472.2 1901 65.6
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2468.3 1905 65.7
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2462.2 1902 65.7
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2458.7 1904 65.4
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2457.9 1903 65.4
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2457.6 1914 65.0
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2442.2 1898 65.6
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2428.3 1888 66.0
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2421.4 1901 64.5
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2410.9 1895 65.7
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2401.7 1929 64.5
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2397.5 1928 64.4
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2397.1 1900 65.1
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2391.7 2030 62.0
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2389.0 1874 65.5
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2356.6 1919 63.9
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2356.3 1900 64.3
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2336.6 1988 61.8
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2329.3 1909 62.8
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2312.7 1709 69.3
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2310.4 1922 61.9
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2285.8 1898 62.9
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2277.3 1561 74.7
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2237.6 1904 59.7
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2207.6 1909 59.2
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2204.9 1736 66.0
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2132.1 1762 63.2
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2107.8 1822 61.7
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2045.4 1901 56.1
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1813.5 1254 74.0
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1770.4 1446 62.4
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1700.3 1231 68.7
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1629.8 1902 48.6
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1344.7 1027 65.5
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1333.9 1938 40.5
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1333.2 1939 39.0
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1327.8 2014 38.7
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1274.6 1955 38.3
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1182.5 803 75.7
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1176.8 1913 37.5
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1165.2 865 69.6
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1106.7 1939 35.3
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 9.1e-311 1071.2 1914 34.7
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 1.6e-291 1007.3 1028 54.7
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.9e-289 1000.3 1918 33.7
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 1.2e-259 901.4 2051 31.4
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 2.0e-254 884.0 1172 46.7
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 3.8e-237 826.6 773 54.7
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 2.8e-208 730.7 504 72.8
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 8.9e-170 602.8 632 57.1
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.6e-150 538.9 339 82.6
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 3.4e-137 494.6 319 76.2
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.1e-133 480.7 456 51.5
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 8.7e-133 479.9 678 45.9
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 5.3e-122 444.1 277 82.3
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 1.0e-112 413.3 1999 23.8
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.9e-109 401.4 479 48.0
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 7.4e-108 397.1 342 65.2
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 2.8e-99 368.6 246 78.9
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 2.8e-99 368.6 220 73.2
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.7e-91 342.8 259 62.5
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 3.1e-82 312.0 1690 24.0
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.1e-79 303.5 360 51.7
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.9e-72 278.5 225 57.3
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.9e-66 259.6 167 68.9
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 3.4e-44 185.7 163 64.4
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 6.4e-43 181.4 172 63.4
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 2.5e-39 169.5 93 95.7
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.6e-38 166.8 138 65.2
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 2.1e-38 166.4 162 62.3
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 6.2e-38 164.9 100 82.0
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.9e-32 145.6 212 42.5
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 5.3e-29 135.2 172 51.2
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 8.7e-24 117.9 74 71.6
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 4.3e-23 115.5 75 78.7
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 2.1e-22 113.2 73 80.8
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.4e-21 110.5 698 22.6
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 5.3e-21 108.6 65 84.6
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 5.8e-20 105.1 852 21.7
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 5.8e-20 105.1 76 63.2
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 6.7e-16 91.7 67 58.2
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 8.2e-14 84.7 73 49.3
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 1.8e-13 83.6 71 69.0
arahy.Tifrunner.gnm1.ann1.L5L68D Arachis hypogaea HOM05D001579 ORTHO05D005341 5.3e-13 82.0 80 58.8
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 6.9e-13 81.6 96 50.0
arahy.Tifrunner.gnm1.ann1.TGLR9V Arachis hypogaea HOM05D004535 ORTHO05D005341 1.1e-10 74.3 163 36.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.2e-10 72.4 72 58.3
arahy.Tifrunner.gnm1.ann1.39Z329 Arachis hypogaea HOM05D002272 ORTHO05D005405 1.6e-09 70.5 36 97.2
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.8e-08 67.0 58 65.5


User provided reference genes

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