Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.DB37YY Arachis hypogaea HOM05D002963 ORTHO05D003302 4.9e-32 140.6 74 100.0
arahy.Tifrunner.gnm1.ann1.P2ZTC5 Arachis hypogaea HOM05D002963 ORTHO05D003302 9.6e-12 73.2 67 62.7
Ca_12727_v3 Cicer arietinum L. HOM05D002963 ORTHO05D003302 2.1e-11 72.0 68 58.8
Psat6g035800 Pisum sativum HOM05D002963 ORTHO05D003302 2.8e-11 71.6 68 57.4
Ciclev10006104m.g Citrus clementina HOM05D002963 ORTHO05D003302 3.7e-11 71.2 68 52.9
Gohir.D11G014500 Gossypium hirsutum HOM05D002963 ORTHO05D003302 1.4e-10 69.3 63 58.7
Gorai.007G014900 Gossypium raimondii HOM05D002963 ORTHO05D003302 1.4e-10 69.3 63 58.7
Gohir.A11G014300 Gossypium hirsutum HOM05D002963 ORTHO05D003302 1.8e-10 68.9 63 57.1
TPR.G20018 Trifolium pratense HOM05D002963 ORTHO05D003302 1.8e-10 68.9 68 55.9
Atru.chr1.151 Acer truncatum HOM05D002963 ORTHO05D003302 2.4e-10 68.6 68 52.9
CANSAT21G1750 Cannabis sativa HOM05D002963 ORTHO05D003302 2.4e-10 68.6 68 55.9
Medtr1g026920 Medicago truncatula HOM05D002963 ORTHO05D003302 2.4e-10 68.6 68 55.9
AL6G35570 Arabidopsis lyrata HOM05D002963 ORTHO05D003302 4.0e-10 67.8 68 54.4
AT5G24170 Arabidopsis thaliana HOM05D002963 ORTHO05D003302 4.0e-10 67.8 68 54.4
arahy.Tifrunner.gnm1.ann1.QG5CGN Arachis hypogaea HOM05D002963 ORTHO05D003302 4.0e-10 67.8 67 59.7
Sp2g23140 Schrenkiella parvula HOM05D002963 ORTHO05D003302 4.0e-10 67.8 72 51.4
Carub.0006s2192 Capsella rubella HOM05D002963 ORTHO05D003302 5.3e-10 67.4 68 55.9
FAN01G2740 Fragaria x ananassa HOM05D002963 ORTHO05D003302 5.3e-10 67.4 68 54.4
THA.LOC104821370 Tarenaya hassleriana HOM05D002963 ORTHO05D003302 5.3e-10 67.4 68 52.9
HanXRQChr09g0253011 Helianthus annuus HOM05D002963 ORTHO05D003302 6.9e-10 67.0 68 54.4
TAR629G0201 Trochodendron aralioides HOM05D002963 ORTHO05D003302 9.0e-10 66.6 67 53.7
A06p35010 Brassica napus HOM05D002963 ORTHO05D003302 1.5e-09 65.9 68 52.9
BraA06t26424Z Brassica rapa HOM05D002963 ORTHO05D003302 1.5e-09 65.9 68 52.9
Duzib068G0658 Durio zibethinus HOM05D002963 ORTHO05D003302 1.5e-09 65.9 63 57.1
ECA232G3809 Erigeron canadensis HOM05D002963 ORTHO05D003302 1.5e-09 65.9 67 53.7
Sc13g0009770 Simmondsia chinensis HOM05D002963 ORTHO05D003302 1.5e-09 65.9 67 50.7
BcaNung01807 Brassica carinata HOM05D002963 ORTHO05D003302 2.0e-09 65.5 68 52.9
C07p43540 Brassica napus HOM05D002963 ORTHO05D003302 2.0e-09 65.5 68 52.9
BolC7t44881H Brassica oleracea HOM05D002963 ORTHO05D003302 2.0e-09 65.5 68 52.9
Migut.F00227 Erythranthe guttata HOM05D002963 ORTHO05D003302 2.0e-09 65.5 68 52.9
RcHm_v2.0_Chr1g0380991 Rosa chinensis HOM05D002963 ORTHO05D003302 2.0e-09 65.5 65 56.9
BcaNung01215 Brassica carinata HOM05D002963 ORTHO05D003302 2.6e-09 65.1 68 51.5
Thhalv10005042m.g Eutrema salsugineum HOM05D002963 ORTHO05D003302 2.6e-09 65.1 68 52.9
FvH4_7g31760 Fragaria vesca HOM05D002963 ORTHO05D003302 2.6e-09 65.1 65 55.4
FAN06G1762 Fragaria x ananassa HOM05D002963 ORTHO05D003302 2.6e-09 65.1 65 55.4
FAN06G2503 Fragaria x ananassa HOM05D002963 ORTHO05D003302 2.6e-09 65.1 65 55.4
Rhsim03G0207600 Rhododendron simsii HOM05D002963 ORTHO05D003302 2.6e-09 65.1 68 55.9
COL.COLO4_11260 Corchorus olitorius HOM05D002963 ORTHO05D003302 3.4e-09 64.7 63 55.6
Lalb_Chr22g0352161 Lupinus albus HOM05D002963 ORTHO05D003302 3.4e-09 64.7 68 52.9
MD01G1219600 Malus domestica HOM05D002963 ORTHO05D003302 3.4e-09 64.7 65 55.4
Sed0015989 Sechium edule HOM05D002963 ORTHO05D003302 3.4e-09 64.7 67 52.2
Thecc.03G196000 Theobroma cacao HOM05D002963 ORTHO05D003302 3.4e-09 64.7 63 55.6
GSVIVG01038712001 Vitis vinifera HOM05D002963 ORTHO05D003302 3.4e-09 64.7 67 53.7
Cpa.g.sc3.66 Carica papaya HOM05D002963 ORTHO05D003302 4.5e-09 64.3 68 52.9
QL09p009532 Quercus lobata HOM05D002963 ORTHO05D003302 4.5e-09 64.3 67 50.7
Aqoxy7G00098 Aquilegia oxysepala HOM05D002963 ORTHO05D003302 5.8e-09 63.9 67 50.7
Cfa016253 Carpinus fangiana HOM05D002963 ORTHO05D003302 5.8e-09 63.9 67 50.7
Cc02_g01690 Coffea canephora HOM05D002963 ORTHO05D003302 5.8e-09 63.9 68 52.9
Haze_00187 Corylus avellana HOM05D002963 ORTHO05D003302 5.8e-09 63.9 67 50.7
Dinv35323 Davidia involucrata HOM05D002963 ORTHO05D003302 5.8e-09 63.9 68 50.0
SGA_v2.0_scaffold44G16787 Striga asiatica HOM05D002963 ORTHO05D003302 5.8e-09 63.9 68 50.0
FAN10G3925 Fragaria x ananassa HOM05D002963 ORTHO05D003302 7.6e-09 63.5 68 52.9
TWI23G0005 Tripterygium wilfordii HOM05D002963 ORTHO05D003302 7.6e-09 63.5 67 53.7
MELO3C008483.2 Cucumis melo HOM05D002963 ORTHO05D003302 1.0e-08 63.2 67 50.7
Glyma.19G065700 Glycine max HOM05D002963 ORTHO05D003302 1.0e-08 63.2 68 54.4
Lsat_1_v5_gn_9_58281 Lactuca sativa HOM05D002963 ORTHO05D003302 1.0e-08 63.2 63 54.0
SalBow4G2345 Salvia bowleyana HOM05D002963 ORTHO05D003302 1.0e-08 63.2 72 50.0
SalBow4G2829 Salvia bowleyana HOM05D002963 ORTHO05D003302 1.0e-08 63.2 72 50.0
TWI14G0296 Tripterygium wilfordii HOM05D002963 ORTHO05D003302 1.0e-08 63.2 67 53.7
EL10Ac3g05302 Beta vulgaris HOM05D002963 ORTHO05D003302 1.7e-08 62.4 68 48.5
Lj1g0025682 Lotus japonicus HOM05D002963 ORTHO05D003302 1.7e-08 62.4 68 51.5
Phvul.001G078100 Phaseolus vulgaris HOM05D002963 ORTHO05D003302 1.7e-08 62.4 68 51.5
Hund04855 Selenicereus undatus HOM05D002963 ORTHO05D003302 1.7e-08 62.4 68 48.5
CSS0028941 Camellia sinensis var. sinensis HOM05D002963 ORTHO05D003302 2.2e-08 62.0 65 53.8
ClCG05G008850 Citrullus lanatus HOM05D002963 ORTHO05D003302 2.2e-08 62.0 67 49.3
Potri.015G017300 Populus trichocarpa HOM05D002963 ORTHO05D003302 2.2e-08 62.0 68 54.4
Nn1g01870 Nelumbo nucifera HOM05D002963 ORTHO05D003302 2.9e-08 61.6 67 50.7
Nitab4.5_0002492g0050 Nicotiana tabacum HOM05D002963 ORTHO05D003302 2.9e-08 61.6 68 45.6
Peaxi162Scf00550g00534 Petunia axillaris HOM05D002963 ORTHO05D003302 2.9e-08 61.6 68 47.1
Sabra15G0013300 Salix brachista HOM05D002963 ORTHO05D003302 2.9e-08 61.6 68 52.9
Manes.14G006700 Manihot esculenta HOM05D002963 ORTHO05D003302 3.8e-08 61.2 68 50.0
Nitab4.5_0000714g0100 Nicotiana tabacum HOM05D002963 ORTHO05D003302 3.8e-08 61.2 68 45.6
CAN.G108.63 Capsicum annuum HOM05D002963 ORTHO05D003302 4.9e-08 60.8 68 48.5
CiPaw.05G252000 Carya illinoinensis HOM05D002963 ORTHO05D003302 6.5e-08 60.5 53 58.5
AUR62006112 Chenopodium quinoa HOM05D002963 ORTHO05D003302 6.5e-08 60.5 68 48.5
PSO063G7184 Papaver somniferum HOM05D002963 ORTHO05D003302 6.5e-08 60.5 53 64.2
Zm00001eb338680 Zea mays HOM05D002963 ORTHO05D003302 6.5e-08 60.5 53 58.5
MSTRG.8666 Avicennia marina HOM05D002963 ORTHO05D003302 8.4e-08 60.1 53 60.4
CDE02G1782 Ceratophyllum demersum HOM05D002963 ORTHO05D003302 8.4e-08 60.1 67 49.3
PSO170G2006 Papaver somniferum HOM05D002963 ORTHO05D003302 8.4e-08 60.1 53 64.2
Ah.07g205850 Amaranthus hybridus HOM05D002963 ORTHO05D003302 1.1e-07 59.7 65 49.2
Manes.06G159500 Manihot esculenta HOM05D002963 ORTHO05D003302 1.1e-07 59.7 68 50.0
PGR042G2794 Punica granatum HOM05D002963 ORTHO05D003302 1.1e-07 59.7 68 48.5
Solyc03g117000.3 Solanum lycopersicum HOM05D002963 ORTHO05D003302 1.4e-07 59.3 68 48.5
Sopen03g035900 Solanum pennellii HOM05D002963 ORTHO05D003302 1.4e-07 59.3 68 48.5
arahy.Tifrunner.gnm1.ann1.92FM5P Arachis hypogaea HOM05D002963 ORTHO05D003302 1.9e-07 58.9 70 51.4
Hma1.2p1_1188F.1_g265240 Hydrangea macrophylla HOM05D002963 ORTHO05D003302 1.9e-07 58.9 67 46.3
Oeu041319.1 Olea europaea HOM05D002963 ORTHO05D003302 2.5e-07 58.5 65 49.2
vmacro06545 Vaccinium macrocarpon HOM05D002963 ORTHO05D003302 2.5e-07 58.5 68 50.0
Eucgr.A01469 Eucalyptus grandis HOM05D002963 ORTHO05D003302 4.2e-07 57.8 68 45.6
Glyma.09G156800 Glycine max HOM05D002963 ORTHO05D003302 4.2e-07 57.8 67 46.3
Os01g0219100 Oryza sativa ssp. japonica HOM05D002963 ORTHO05D003302 4.2e-07 57.8 52 55.8
Phvul.004G132100 Phaseolus vulgaris HOM05D002963 ORTHO05D003302 4.2e-07 57.8 67 46.3
arahy.Tifrunner.gnm1.ann1.Z9R8EV Arachis hypogaea HOM05D002963 ORTHO05D003302 5.5e-07 57.4 71 49.3
Lj2g0002491 Lotus japonicus HOM05D002963 ORTHO05D003302 5.5e-07 57.4 67 44.8
Aa31LG11G3440 Aethionema arabicum HOM05D002963 ORTHO05D003302 9.3e-07 56.6 68 48.5
Lalb_Chr19g0131401 Lupinus albus HOM05D002963 ORTHO05D003302 9.3e-07 56.6 67 44.8
MBI06_g08465_MAGBIO Magnolia biondii HOM05D002963 ORTHO05D003302 9.3e-07 56.6 67 44.8
RcHm_v2.0_Chr3g0485031 Rosa chinensis HOM05D002963 ORTHO05D003302 9.3e-07 56.6 67 44.8
VMungo0464G0114 Vigna mungo HOM05D002963 ORTHO05D003302 9.3e-07 56.6 67 44.8
Sc16g0009900 Simmondsia chinensis HOM05D002963 ORTHO05D003302 1.2e-06 56.2 67 43.3
PGSC0003DMG400014119 Solanum tuberosum HOM05D002963 ORTHO05D003302 1.2e-06 56.2 63 49.2
ATR0602G101 Amborella trichopoda HOM05D002963 ORTHO05D003302 1.6e-06 55.8 67 44.8
arahy.Tifrunner.gnm1.ann1.1SSJ6X Arachis hypogaea HOM05D002963 ORTHO05D003302 1.6e-06 55.8 67 44.8
arahy.Tifrunner.gnm1.ann1.9IQG37 Arachis hypogaea HOM05D002963 ORTHO05D003302 1.6e-06 55.8 67 44.8
MD15G1140900 Malus domestica HOM05D002963 ORTHO05D003302 1.6e-06 55.8 67 43.3
Os02g0564500 Oryza sativa ssp. japonica HOM05D002963 ORTHO05D003302 1.6e-06 55.8 68 39.7
Ca_25249_v3 Cicer arietinum L. HOM05D002963 ORTHO05D003302 2.1e-06 55.5 67 43.3
CsaV3_3G027890 Cucumis sativus L. HOM05D002963 ORTHO05D003302 2.1e-06 55.5 67 44.8
Glyma.16G207600 Glycine max HOM05D002963 ORTHO05D003302 2.1e-06 55.5 63 46.0
Psat1g113520 Pisum sativum HOM05D002963 ORTHO05D003302 2.1e-06 55.5 67 43.3
TPR.G5840 Trifolium pratense HOM05D002963 ORTHO05D003302 2.1e-06 55.5 67 43.3
EL10Ac4g09731 Beta vulgaris HOM05D002963 ORTHO05D003302 2.7e-06 55.1 67 41.8
AUR62006958 Chenopodium quinoa HOM05D002963 ORTHO05D003302 2.7e-06 55.1 67 41.8
Zm00001eb182550 Zea mays HOM05D002963 ORTHO05D003302 2.7e-06 55.1 63 42.9
CDE02G1315 Ceratophyllum demersum HOM05D002963 ORTHO05D003302 3.5e-06 54.7 68 39.7
CDE08G0486 Ceratophyllum demersum HOM05D002963 ORTHO05D003302 3.5e-06 54.7 68 39.7
FvH4_1g25890 Fragaria vesca HOM05D002963 ORTHO05D003302 3.5e-06 54.7 63 44.4
FAN19G0921 Fragaria x ananassa HOM05D002963 ORTHO05D003302 3.5e-06 54.7 63 44.4
FAN28G1383 Fragaria x ananassa HOM05D002963 ORTHO05D003302 3.5e-06 54.7 63 44.4
THA.LOC104800518 Tarenaya hassleriana HOM05D002963 ORTHO05D003302 3.5e-06 54.7 63 42.9
CARHR189940 Cardamine hirsuta HOM05D002963 ORTHO05D003302 4.6e-06 54.3 63 41.3
Cc00_g14800 Coffea canephora HOM05D002963 ORTHO05D003302 4.6e-06 54.3 63 46.0
DCAR_009621 Daucus carota HOM05D002963 ORTHO05D003302 4.6e-06 54.3 67 41.8
MBI06_g43030_MAGBIO Magnolia biondii HOM05D002321 ORTHO05D006445 4.6e-06 54.3 67 43.3
Sed0020986 Sechium edule HOM05D002963 ORTHO05D003302 4.6e-06 54.3 67 41.8
TAR381G0708 Trochodendron aralioides HOM05D002963 ORTHO05D003302 4.6e-06 54.3 67 43.3
AL6G34830 Arabidopsis lyrata HOM05D002963 ORTHO05D003302 6.0e-06 53.9 63 41.3
AT5G23550 Arabidopsis thaliana HOM05D002963 ORTHO05D003302 6.0e-06 53.9 63 41.3
BcaC04g23503 Brassica carinata HOM05D002963 ORTHO05D003302 6.0e-06 53.9 63 41.3
A09p06880 Brassica napus HOM05D002963 ORTHO05D003302 6.0e-06 53.9 63 41.3
BraA09t36335Z Brassica rapa HOM05D002963 ORTHO05D003302 6.0e-06 53.9 63 41.3
Carub.0006s2133 Capsella rubella HOM05D002963 ORTHO05D003302 6.0e-06 53.9 63 41.3
ClCG02G000170 Citrullus lanatus HOM05D002963 ORTHO05D003302 6.0e-06 53.9 67 41.8
MELO3C023206.2 Cucumis melo HOM05D002963 ORTHO05D003302 6.0e-06 53.9 67 41.8
Thhalv10005010m.g Eutrema salsugineum HOM05D002963 ORTHO05D003302 6.0e-06 53.9 63 41.3
Prupe.4G288900 Prunus persica HOM05D002963 ORTHO05D003302 6.0e-06 53.9 67 41.8
Sp2g23640 Schrenkiella parvula HOM05D002963 ORTHO05D003302 6.0e-06 53.9 63 41.3
Hund07188 Selenicereus undatus HOM05D002963 ORTHO05D003302 6.0e-06 53.9 68 41.2
A06p34520 Brassica napus HOM05D002963 ORTHO05D003302 7.9e-06 53.5 63 42.9
C07p44030 Brassica napus HOM05D002963 ORTHO05D003302 7.9e-06 53.5 63 42.9
BraA06t26380Z Brassica rapa HOM05D002963 ORTHO05D003302 7.9e-06 53.5 63 42.9
CANSAT54G0177 Cannabis sativa HOM05D002963 ORTHO05D003302 7.9e-06 53.5 67 41.8
CAN.G66.5 Capsicum annuum HOM05D002963 ORTHO05D003302 7.9e-06 53.5 63 44.4


User provided reference genes

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