Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 7.9e-205 716.8 351 100.0
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 6.2e-202 707.2 351 98.3
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 7.0e-161 570.9 350 80.0
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.6e-160 569.7 350 79.1
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 2.5e-158 562.4 355 77.2
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 1.2e-157 560.1 354 78.2
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 5.7e-155 551.2 349 77.4
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 5.5e-150 534.6 352 76.1
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 1.6e-149 533.1 351 74.6
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 6.8e-148 527.7 347 75.2
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.7e-146 523.1 351 72.6
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 6.3e-146 521.2 353 72.5
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 7.0e-145 517.7 332 76.8
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 2.7e-144 515.8 350 69.4
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 2.7e-144 515.8 352 71.9
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 1.0e-143 513.8 351 71.5
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.5e-142 510.0 350 68.9
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 7.2e-142 507.7 350 68.0
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 4.7e-141 505.0 349 69.6
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 8.9e-140 500.7 352 67.0
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 2.6e-139 499.2 352 69.0
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.3e-138 496.9 353 67.7
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 1.7e-138 496.5 340 70.6
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.7e-138 496.5 340 70.3
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 2.2e-138 496.1 351 68.7
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 3.7e-138 495.4 351 67.8
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 4.9e-138 495.0 353 67.7
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 6.3e-138 494.6 351 67.8
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 8.3e-138 494.2 351 68.1
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 8.3e-138 494.2 351 69.2
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.1e-137 493.8 349 67.6
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 1.8e-137 493.0 351 67.0
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.8e-137 493.0 351 68.9
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 3.2e-137 492.3 350 68.3
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 4.1e-137 491.9 349 67.3
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.2e-136 490.3 350 67.4
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.6e-136 490.0 352 67.0
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 1.6e-136 490.0 349 66.8
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 4.5e-136 488.4 349 69.1
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 5.9e-136 488.0 353 68.0
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 7.8e-136 487.6 353 69.1
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 7.8e-136 487.6 352 66.8
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.3e-135 486.9 351 68.1
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.3e-135 486.9 350 66.0
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.7e-135 486.5 350 68.9
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.7e-135 486.5 350 68.6
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.3e-135 486.1 351 68.1
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.3e-135 486.1 350 67.1
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 2.3e-135 486.1 349 67.3
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.9e-135 485.7 349 67.3
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 3.9e-135 485.3 350 67.4
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 5.0e-135 485.0 349 66.5
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.1e-134 483.8 350 67.4
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 9.5e-134 480.7 350 67.1
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.6e-133 479.9 350 66.0
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 2.1e-133 479.6 350 67.4
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 3.6e-133 478.8 381 61.9
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.6e-133 478.8 350 66.6
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 6.1e-133 478.0 351 65.8
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 8.0e-133 477.6 350 64.0
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 8.0e-133 477.6 354 66.1
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.0e-132 477.2 350 66.6
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.8e-132 476.5 350 66.0
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 1.8e-132 476.5 349 66.5
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 4.0e-132 475.3 352 66.8
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 5.2e-132 474.9 351 64.4
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 2.0e-131 473.0 355 65.6
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 3.4e-131 472.2 301 73.8
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 4.4e-131 471.9 350 66.6
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 5.8e-131 471.5 350 66.9
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 4.9e-130 468.4 351 63.5
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 6.4e-130 468.0 369 62.9
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 6.4e-130 468.0 350 64.9
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 1.1e-129 467.2 356 64.9
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 1.1e-129 467.2 356 64.9
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 1.1e-129 467.2 347 64.6
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 1.9e-129 466.5 352 64.8
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 2.4e-129 466.1 352 64.2
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 3.2e-129 465.7 350 64.3
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 4.1e-129 465.3 356 64.9
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 7.0e-129 464.5 351 64.7
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 7.0e-129 464.5 344 63.7
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 9.2e-129 464.2 350 65.4
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 6.0e-128 461.5 359 64.1
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.3e-127 460.3 382 60.7
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 3.0e-127 459.1 338 66.0
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 5.0e-127 458.4 345 63.8
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.5e-126 456.8 349 64.2
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 3.3e-126 455.7 321 67.3
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 1.2e-125 453.8 352 63.9
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 1.6e-125 453.4 352 62.8
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 3.6e-125 452.2 350 62.9
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 4.7e-125 451.8 294 74.1
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 6.8e-124 448.0 409 57.5
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 1.2e-123 447.2 349 61.9
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 3.4e-123 445.7 329 65.3
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 8.3e-122 441.0 349 62.2
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 4.1e-121 438.7 350 62.3
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 1.2e-120 437.2 349 59.6
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 1.3e-119 433.7 301 69.1
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 5.8e-115 418.3 349 61.3
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.9e-114 416.0 246 74.8
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 3.7e-114 415.6 234 80.3
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 6.4e-114 414.8 246 74.8
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.2e-112 410.6 330 61.5
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 8.6e-111 404.4 256 75.0
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 2.1e-101 373.2 302 59.6
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 2.4e-100 369.8 298 61.1
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 8.4e-98 361.3 257 68.9
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 1.2e-96 357.5 330 57.3
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.1e-93 346.7 331 52.9
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.4e-92 344.0 232 69.8
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 6.2e-85 318.5 244 61.9
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 8.1e-85 318.2 246 66.7
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 8.1e-85 318.2 246 66.7
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 1.8e-84 317.0 246 63.4
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.4e-83 312.8 245 64.9
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 2.3e-79 300.1 246 61.4
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.8e-76 290.4 329 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 7.2e-65 251.9 173 68.8
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.1e-62 244.6 246 49.6
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 6.1e-56 222.2 163 65.6
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 5.1e-55 219.2 199 53.8
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.0e-54 217.2 199 53.3
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 6.3e-53 212.2 183 54.6
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 1.1e-49 201.4 180 55.6
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.8e-45 186.0 161 58.4
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 1.2e-27 128.3 104 60.6
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 2.5e-25 120.6 73 74.0
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 6.6e-18 95.9 57 68.4
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 2.5e-09 67.4 53 60.4


User provided reference genes

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