Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 6.2e-151 537.3 254 100.0
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 2.3e-150 535.4 254 99.6
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 8.4e-140 500.4 254 91.3
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 2.4e-139 498.8 254 90.9
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 3.2e-139 498.4 252 90.9
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 1.6e-138 496.1 254 89.8
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 2.1e-138 495.7 251 91.2
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 9.6e-136 486.9 254 87.8
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 1.3e-135 486.5 251 87.6
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 7.6e-133 477.2 254 85.0
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 7.6e-133 477.2 254 86.2
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 1.3e-132 476.5 251 87.3
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 2.2e-132 475.7 251 85.7
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 2.9e-132 475.3 254 83.5
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 6.4e-132 474.2 252 85.3
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 8.4e-132 473.8 254 85.4
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 8.4e-132 473.8 249 84.3
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 1.4e-131 473.0 250 85.6
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 1.4e-131 473.0 253 83.8
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 1.4e-131 473.0 254 85.4
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 5.4e-131 471.1 253 82.6
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 5.4e-131 471.1 254 83.5
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 1.2e-130 469.9 252 84.9
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 1.2e-130 469.9 252 84.9
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 1.6e-130 469.5 251 82.5
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 2.1e-130 469.2 254 82.7
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 4.6e-130 468.0 254 81.9
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 6.0e-130 467.6 250 83.2
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 7.9e-130 467.2 247 85.8
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 1.3e-129 466.5 250 85.2
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 1.3e-129 466.5 253 82.2
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 1.7e-129 466.1 248 84.7
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 1.7e-129 466.1 248 84.3
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.7e-129 466.1 254 81.5
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 1.7e-129 466.1 251 84.5
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.3e-129 465.7 252 82.1
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 2.3e-129 465.7 249 83.9
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 5.1e-129 464.5 250 84.0
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 8.7e-129 463.8 254 83.1
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 1.1e-128 463.4 252 81.7
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.1e-128 463.4 250 82.8
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 1.5e-128 463.0 252 82.1
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 1.9e-128 462.6 250 83.6
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 2.5e-128 462.2 255 82.7
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 3.3e-128 461.8 253 81.4
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 4.3e-128 461.5 246 83.3
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 4.3e-128 461.5 254 80.3
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 5.6e-128 461.1 252 81.3
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 7.4e-128 460.7 249 81.9
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 7.4e-128 460.7 250 82.0
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 7.4e-128 460.7 250 84.4
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 9.6e-128 460.3 251 81.3
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 1.3e-127 459.9 248 83.1
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.6e-127 459.5 254 80.3
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.6e-127 459.5 254 80.3
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.1e-127 459.1 249 83.1
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 2.1e-127 459.1 248 82.7
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.8e-127 458.8 252 81.3
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 3.6e-127 458.4 249 81.9
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 4.8e-127 458.0 253 80.6
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 4.8e-127 458.0 253 80.2
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 4.8e-127 458.0 253 80.2
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 8.1e-127 457.2 254 82.3
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 8.1e-127 457.2 253 79.4
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 1.1e-126 456.8 248 82.7
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 2.4e-126 455.7 250 80.0
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 2.4e-126 455.7 249 82.7
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 3.1e-126 455.3 248 81.5
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 5.3e-126 454.5 245 80.8
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 1.5e-125 453.0 258 81.0
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 1.5e-125 453.0 254 81.5
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 2.0e-125 452.6 251 79.7
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 2.6e-125 452.2 251 79.7
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 4.5e-125 451.4 233 87.6
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.7e-124 449.5 251 83.7
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 2.9e-124 448.7 254 79.9
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 2.9e-124 448.7 251 78.9
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 3.8e-124 448.4 250 81.2
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 4.9e-124 448.0 250 80.0
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.1e-123 446.8 250 81.6
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 1.9e-123 446.0 266 77.4
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 1.9e-123 446.0 247 80.2
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.9e-123 446.0 250 81.2
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 1.9e-123 446.0 251 78.5
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 4.2e-123 444.9 248 82.7
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 4.2e-123 444.9 254 79.1
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 4.2e-123 444.9 254 79.1
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 4.2e-123 444.9 254 79.1
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 4.2e-123 444.9 254 78.3
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 4.2e-123 444.9 254 78.3
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 5.5e-123 444.5 254 79.1
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 1.2e-122 443.4 254 78.7
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 2.1e-122 442.6 280 73.6
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 2.1e-122 442.6 250 77.6
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 2.7e-122 442.2 252 77.8
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 2.7e-122 442.2 254 78.0
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 1.8e-121 439.5 280 73.2
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 3.0e-121 438.7 254 78.0
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 6.7e-121 437.6 246 80.1
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 3.3e-120 435.3 255 78.0
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 7.4e-120 434.1 275 73.5
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 2.1e-119 432.6 255 78.8
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 3.7e-119 431.8 255 78.0
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 8.1e-119 430.6 255 77.6
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 8.1e-119 430.6 311 66.2
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 5.3e-118 427.9 255 77.3
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 5.3e-118 427.9 255 77.3
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 5.3e-118 427.9 255 77.3
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 2.0e-117 426.0 251 75.3
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 6.5e-116 421.0 237 83.1
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.9e-115 419.5 254 77.2
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 2.7e-114 415.6 230 80.9
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 2.3e-113 412.5 248 71.8
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.3e-111 406.8 258 74.4
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 4.5e-109 398.3 249 69.5
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 1.7e-108 396.4 220 78.6
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 6.5e-108 394.4 220 78.2
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 9.3e-107 390.6 245 68.6
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 1.0e-105 387.1 241 69.7
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 2.5e-104 382.5 243 67.1
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 5.7e-104 381.3 248 66.1
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 4.1e-102 375.2 233 74.7
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 9.0e-102 374.0 248 66.5
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 1.3e-100 370.2 252 69.0
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 6.1e-98 361.3 245 63.3
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 4.1e-94 348.6 208 78.4
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 7.7e-93 344.4 199 78.9
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 4.7e-90 335.1 242 60.3
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 9.7e-80 300.8 173 79.2
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 3.7e-79 298.9 173 79.2
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 8.2e-79 297.7 247 59.9
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 1.8e-70 270.0 137 84.7
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 1.0e-57 227.6 167 65.3
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 7.5e-56 221.5 113 83.2
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-54 215.3 154 58.4
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 3.5e-53 212.6 190 55.3
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 3.9e-52 209.1 211 50.2
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 6.6e-52 208.4 120 79.2
TWI63G0736 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.9e-46 190.3 142 67.6
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 7.3e-43 178.3 96 82.3
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 4.6e-37 159.1 194 41.2
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 7.8e-37 158.3 223 43.5
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 9.5e-35 151.4 86 73.3
Haze_05283 Corylus avellana HOM05D004928 ORTHO05D005901 5.1e-28 129.0 82 69.5
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 1.6e-26 124.0 59 84.7
Haze_05288 Corylus avellana HOM05D004928 ORTHO05D005901 2.1e-26 123.6 71 73.2
Haze_05286 Corylus avellana HOM05D004928 ORTHO05D005901 6.2e-26 122.1 71 73.2
TPR.G688 Trifolium pratense HOM05D004928 ORTHO05D005901 1.7e-20 104.0 55 83.6
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 2.3e-20 103.6 52 86.5
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 3.3e-19 99.8 49 81.6
MCO02G163 Micromonas commoda HOM05D002775 ORTHO05D003262 2.4e-09 67.0 222 26.1
Zm00001eb414970 Zea mays HOM05D002775 ORTHO05D003262 2.4e-09 67.0 209 25.4
Sabra10G0066200 Salix brachista HOM05D002775 ORTHO05D003262 4.0e-09 66.2 213 24.4
CDE05G2768 Ceratophyllum demersum HOM05D002775 ORTHO05D003262 7.6e-08 62.0 122 29.5
Potri.010G093900 Populus trichocarpa HOM05D002775 ORTHO05D003262 7.6e-08 62.0 205 23.4
Medtr7g039510 Medicago truncatula HOM05D002775 ORTHO05D003262 9.9e-08 61.6 202 25.7
Ciclev10032480m.g Citrus clementina HOM05D002775 ORTHO05D003262 1.7e-07 60.8 205 23.4
Psat2g121200 Pisum sativum HOM05D002775 ORTHO05D003262 1.7e-07 60.8 207 25.1
Sc04g0008210 Simmondsia chinensis HOM05D002775 ORTHO05D003262 2.9e-07 60.1 204 25.0
COL.COLO4_22991 Corchorus olitorius HOM05D002775 ORTHO05D003262 6.4e-07 58.9 213 23.9
Carub.0004s2357 Capsella rubella HOM05D002775 ORTHO05D003262 8.4e-07 58.5 119 31.1
VMungo1215G1815 Vigna mungo HOM05D002775 ORTHO05D003262 8.4e-07 58.5 213 23.9
arahy.Tifrunner.gnm1.ann1.BG5WH1 Arachis hypogaea HOM05D002775 ORTHO05D003262 1.1e-06 58.2 206 22.3
Rhsim12G0062200 Rhododendron simsii HOM05D002775 ORTHO05D003262 1.4e-06 57.8 207 22.2
Sed0026850 Sechium edule HOM05D002775 ORTHO05D003262 1.4e-06 57.8 204 23.5
TPR.G37102 Trifolium pratense HOM05D002775 ORTHO05D003262 1.4e-06 57.8 216 22.2
Hma1.2p1_0598F.1_g186650 Hydrangea macrophylla HOM05D002775 ORTHO05D003262 1.9e-06 57.4 205 22.0
Hund05890 Selenicereus undatus HOM05D002775 ORTHO05D003262 1.9e-06 57.4 206 22.8
TWI12G0226 Tripterygium wilfordii HOM05D002775 ORTHO05D003262 1.9e-06 57.4 205 24.4
Lalb_Chr10g0098201 Lupinus albus HOM05D002775 ORTHO05D003262 2.4e-06 57.0 217 24.0
Phvul.002G086200 Phaseolus vulgaris HOM05D002775 ORTHO05D003262 2.4e-06 57.0 206 24.3
arahy.Tifrunner.gnm1.ann1.7KL7FE Arachis hypogaea HOM05D002775 ORTHO05D003262 5.5e-06 55.8 120 25.0
Lsat_1_v5_gn_8_52761 Lactuca sativa HOM05D002775 ORTHO05D003262 5.5e-06 55.8 142 26.8
unitig_699.g19501 Utricularia gibba HOM05D000087 ORTHO05D000439 5.5e-06 55.8 142 26.1
Ca_04781_v3 Cicer arietinum L. HOM05D002775 ORTHO05D003262 7.1e-06 55.5 120 26.7
Glyma.01G046200 Glycine max HOM05D002775 ORTHO05D003262 7.1e-06 55.5 143 27.3
ClCG11G009010 Citrullus lanatus HOM05D002775 ORTHO05D003262 9.3e-06 55.1 116 25.0
Thecc.02G350700 Theobroma cacao HOM05D002775 ORTHO05D003262 9.3e-06 55.1 213 23.5


User provided reference genes

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