Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CY3TH7 Arachis hypogaea HOM05D006805 ORTHO05D008656 9.4e-217 756.5 369 100.0
arahy.Tifrunner.gnm1.ann1.P9L48X Arachis hypogaea HOM05D006805 ORTHO05D008656 7.9e-123 444.5 427 60.0
arahy.Tifrunner.gnm1.ann1.FKKR7E Arachis hypogaea HOM05D006805 ORTHO05D008656 4.5e-118 428.7 409 60.6
Phvul.003G257300 Phaseolus vulgaris HOM05D006805 ORTHO05D008656 5.0e-117 425.2 421 57.0
Glyma.02G052900 Glycine max HOM05D006805 ORTHO05D008656 1.6e-115 420.2 435 55.6
VMungo0251G3732 Vigna mungo HOM05D006805 ORTHO05D008656 2.2e-112 409.8 428 54.7
Lalb_Chr16g0391011 Lupinus albus HOM05D006805 ORTHO05D008656 3.1e-111 406.0 440 53.9
Medtr8g076840 Medicago truncatula HOM05D006805 ORTHO05D008656 5.0e-109 398.7 438 53.0
Psat4g096160 Pisum sativum HOM05D006805 ORTHO05D008656 3.2e-108 396.0 434 53.0
Lj4g0018076 Lotus japonicus HOM05D006805 ORTHO05D008656 3.6e-107 392.5 440 54.3
FAN26G3258 Fragaria x ananassa HOM05D006805 ORTHO05D008656 3.0e-98 362.8 383 53.5
RcHm_v2.0_Chr2g0100411 Rosa chinensis HOM05D006805 ORTHO05D008656 7.5e-97 358.2 432 50.0
FAN19G2522 Fragaria x ananassa HOM05D006805 ORTHO05D008656 1.3e-96 357.5 421 49.9
FAN23G0481 Fragaria x ananassa HOM05D006805 ORTHO05D008656 8.3e-96 354.8 397 51.4
QL06p035053 Quercus lobata HOM05D006805 ORTHO05D008656 1.1e-95 354.4 434 47.9
TWI73G0963 Tripterygium wilfordii HOM05D006805 ORTHO05D008656 1.1e-95 354.4 429 48.7
FvH4_1g12510 Fragaria vesca HOM05D006805 ORTHO05D008656 3.1e-95 352.8 415 50.1
Dinv40030 Davidia involucrata HOM05D006805 ORTHO05D008656 1.6e-94 350.5 462 46.1
GSVIVG01018866001 Vitis vinifera HOM05D006805 ORTHO05D008656 2.7e-94 349.7 424 48.3
Thecc.01G027300 Theobroma cacao HOM05D006805 ORTHO05D008656 4.5e-94 349.0 429 47.1
Cfa006913 Carpinus fangiana HOM05D006805 ORTHO05D008656 5.9e-94 348.6 430 49.3
Duzib147G1209 Durio zibethinus HOM05D006805 ORTHO05D008656 1.7e-93 347.1 434 46.3
CSS0042312 Camellia sinensis var. sinensis HOM05D006805 ORTHO05D008656 2.2e-93 346.7 425 47.3
CiPaw.08G138000 Carya illinoinensis HOM05D006805 ORTHO05D008656 2.2e-93 346.7 429 48.7
Prupe.7G161800 Prunus persica HOM05D006805 ORTHO05D008656 2.9e-93 346.3 431 48.5
CANSAT01G1867 Cannabis sativa HOM05D006805 ORTHO05D008656 4.7e-91 339.0 432 46.5
Gorai.003G012500 Gossypium raimondii HOM05D006805 ORTHO05D008656 8.0e-91 338.2 429 46.2
Potri.007G019400 Populus trichocarpa HOM05D006805 ORTHO05D008656 8.0e-91 338.2 428 46.3
Manes.01G140000 Manihot esculenta HOM05D006805 ORTHO05D008656 1.0e-90 337.8 434 46.1
PGR102G0609 Punica granatum HOM05D006805 ORTHO05D008656 1.0e-90 337.8 431 46.2
Atru.chr3.728 Acer truncatum HOM05D006805 ORTHO05D008656 1.8e-90 337.0 430 48.1
Gohir.A02G167800 Gossypium hirsutum HOM05D006805 ORTHO05D008656 3.0e-90 336.3 429 45.7
Sed0012409 Sechium edule HOM05D006805 ORTHO05D008656 5.2e-90 335.5 440 45.9
Gohir.D03G012200 Gossypium hirsutum HOM05D006805 ORTHO05D008656 1.5e-89 334.0 429 45.7
Nn1g05800 Nelumbo nucifera HOM05D006805 ORTHO05D008656 1.5e-89 334.0 429 45.2
Rhsim08G0122900 Rhododendron simsii HOM05D006805 ORTHO05D008656 5.7e-89 332.0 424 46.5
Haze_03843 Corylus avellana HOM05D006805 ORTHO05D008656 7.5e-89 331.6 469 45.4
CAN.G358.30 Capsicum annuum HOM05D006805 ORTHO05D008656 1.7e-88 330.5 430 45.3
CsaV3_6G046700 Cucumis sativus L. HOM05D006805 ORTHO05D008656 2.2e-88 330.1 431 45.7
Peaxi162Scf00418g00926 Petunia axillaris HOM05D006805 ORTHO05D008656 6.3e-88 328.6 425 45.9
Hma1.2p1_0913F.1_g235930 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 8.3e-88 328.2 424 47.4
COL.COLO4_22005 Corchorus olitorius HOM05D006805 ORTHO05D008656 1.8e-87 327.0 448 45.1
TAR381G0553 Trochodendron aralioides HOM05D006805 ORTHO05D008656 4.1e-87 325.9 429 46.2
Nitab4.5_0004708g0010 Nicotiana tabacum HOM05D006805 ORTHO05D008656 9.1e-87 324.7 412 45.9
Solyc02g084810.3 Solanum lycopersicum HOM05D006805 ORTHO05D008656 9.1e-87 324.7 430 45.3
Sopen02g029480 Solanum pennellii HOM05D006805 ORTHO05D008656 9.1e-87 324.7 430 45.3
MELO3C007867.2 Cucumis melo HOM05D006805 ORTHO05D008656 2.7e-86 323.2 462 43.1
MD15G1252400 Malus domestica HOM05D006805 ORTHO05D008656 1.7e-85 320.5 436 46.1
THA.LOC104804245 Tarenaya hassleriana HOM05D006805 ORTHO05D008656 1.7e-85 320.5 431 44.8
Hund16454 Selenicereus undatus HOM05D006805 ORTHO05D008656 8.6e-85 318.2 418 45.0
HanXRQChr14g0441241 Helianthus annuus HOM05D006805 ORTHO05D008656 1.2e-83 314.3 423 44.7
Aqoxy5G01548 Aquilegia oxysepala HOM05D006805 ORTHO05D008656 2.1e-83 313.5 432 45.1
Cc07_g10060 Coffea canephora HOM05D006805 ORTHO05D008656 6.1e-83 312.0 414 45.7
DCAR_025973 Daucus carota HOM05D006805 ORTHO05D008656 1.4e-82 310.8 428 43.9
Thhalv10000178m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 1.4e-82 310.8 429 44.3
Thhalv10025347m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 1.8e-82 310.5 438 44.3
PSO731G0058 Papaver somniferum HOM05D006805 ORTHO05D008656 4.0e-82 309.3 433 43.0
AL7G14650 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 5.2e-82 308.9 429 44.3
Eucgr.J02381 Eucalyptus grandis HOM05D006805 ORTHO05D008656 1.2e-81 307.8 434 44.0
BolC1t00250H Brassica oleracea HOM05D006805 ORTHO05D008656 1.5e-81 307.4 415 45.5
BcaNung00732 Brassica carinata HOM05D006805 ORTHO05D008656 2.0e-81 307.0 429 44.8
C01p02610 Brassica napus HOM05D006805 ORTHO05D008656 5.7e-81 305.4 429 44.5
Sabra07G0016600 Salix brachista HOM05D006805 ORTHO05D008656 5.7e-81 305.4 442 41.6
Migut.H02510 Erythranthe guttata HOM05D006805 ORTHO05D008656 1.7e-80 303.9 429 41.5
Sp7g34100 Schrenkiella parvula HOM05D006805 ORTHO05D008656 1.7e-80 303.9 429 43.6
Ciclev10025725m.g Citrus clementina HOM05D006805 ORTHO05D008656 6.3e-80 302.0 385 47.5
CARHR244770 Cardamine hirsuta HOM05D006805 ORTHO05D008656 1.1e-79 301.2 416 44.0
MSTRG.2490 Avicennia marina HOM05D006805 ORTHO05D008656 1.4e-79 300.8 424 41.0
Carub.0007s0387 Capsella rubella HOM05D006805 ORTHO05D008656 4.1e-79 299.3 431 42.9
BraA01t00229Z Brassica rapa HOM05D006805 ORTHO05D008656 5.4e-79 298.9 429 44.1
Duzib264G1030 Durio zibethinus HOM05D006805 ORTHO05D008656 7.0e-79 298.5 447 41.6
Ca_22341_v3 Cicer arietinum L. HOM05D006805 ORTHO05D008656 2.3e-77 293.5 406 48.0
A01p02400 Brassica napus HOM05D000394 ORTHO05D008656 6.6e-77 292.0 460 41.3
SGA_v2.0_scaffold51G18803 Striga asiatica HOM05D006805 ORTHO05D008656 1.1e-76 291.2 474 38.0
ECA238G0382 Erigeron canadensis HOM05D006805 ORTHO05D008656 4.3e-76 289.3 410 43.2
AUR62007618 Chenopodium quinoa HOM05D006805 ORTHO05D008656 2.8e-75 286.6 344 47.7
AT4G36440 Arabidopsis thaliana HOM05D006805 ORTHO05D008656 1.2e-73 281.2 430 42.1
Cpa.g.sc6.179 Carica papaya HOM05D006805 ORTHO05D008656 2.9e-72 276.6 367 43.1
Nitab4.5_0000723g0180 Nicotiana tabacum HOM05D006805 ORTHO05D008656 4.9e-72 275.8 402 42.5
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 1.7e-69 267.3 461 39.0
HPP92_008328 Vanilla planifolia HOM05D006805 ORTHO05D008656 3.3e-68 263.1 383 41.3
vmacro17722 Vaccinium macrocarpon HOM05D006805 ORTHO05D008656 7.3e-68 261.9 357 44.8
SalBow8G5631 Salvia bowleyana HOM05D006805 ORTHO05D008656 3.6e-67 259.6 457 35.9
ATR1154G040 Amborella trichopoda HOM05D006805 ORTHO05D008656 2.3e-66 256.9 357 42.3
Hma1.2p1_2955F.1_g330740 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 2.0e-65 253.8 370 44.3
BcaNung05308 Brassica carinata HOM05D000394 ORTHO05D000299 3.7e-64 249.6 350 43.1
CDE06G0805 Ceratophyllum demersum HOM05D006805 ORTHO05D008656 6.6e-61 238.8 386 39.1
Hma1.2p1_0913F.1_g235940 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 1.6e-54 217.6 295 46.1
MBI16_g23836_MAGBIO Magnolia biondii HOM05D006805 ORTHO05D008656 6.6e-53 212.2 355 39.4
TPR.G21535 Trifolium pratense HOM05D006805 ORTHO05D008656 7.3e-52 208.8 162 66.7
Sc03g0003190 Simmondsia chinensis HOM05D006805 ORTHO05D008656 2.2e-48 197.2 393 35.1
Aa31LG6G13250 Aethionema arabicum HOM05D006805 ORTHO05D008656 1.4e-47 194.5 299 40.8
Lj4C209T2 Lonicera japonica HOM05D006805 ORTHO05D008656 2.1e-46 190.7 228 48.7
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.1e-46 190.7 275 42.5
unitig_61.g26353 Utricularia gibba HOM05D006805 ORTHO05D008656 2.5e-44 183.7 282 36.2
AagrBONN_evm.TU.Sc2ySwM_228.1023 Anthoceros agrestis HOM05D006805 ORTHO05D001783 1.2e-41 174.9 434 29.5
AUR62004104 Chenopodium quinoa HOM05D006805 ORTHO05D008656 6.4e-40 169.1 207 45.9
HanXRQChr09g0256121 Helianthus annuus HOM05D006805 ORTHO05D008656 1.2e-38 164.9 266 41.0
Pp3c15_5920 Physcomitrium patens HOM05D006805 ORTHO05D008656 2.1e-38 164.1 381 30.2
Mapoly0033s0048 Marchantia polymorpha HOM05D006805 ORTHO05D008656 3.5e-38 163.3 416 29.6
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 1.0e-37 161.8 202 43.6
AL6G38800 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 1.6e-35 154.5 139 56.8
Pp3c9_15730 Physcomitrium patens HOM05D006805 ORTHO05D008656 2.8e-35 153.7 378 28.8
SMO141G0060 Selaginella moellendorffii HOM05D006805 ORTHO05D008656 5.3e-34 149.4 365 30.7
Lj2g0002148 Lotus japonicus HOM05D006805 ORTHO05D008656 8.4e-32 142.1 82 79.3
EL10As8g23891 Beta vulgaris HOM05D006805 ORTHO05D008656 4.3e-28 129.8 211 37.9
HanXRQChr12g0370271 Helianthus annuus HOM05D006805 ORTHO05D008656 9.6e-28 128.6 240 37.9
Lsat_1_v5_gn_2_78040 Lactuca sativa HOM05D006805 ORTHO05D008656 2.1e-27 127.5 213 38.5
Glyma.16G133100 Glycine max HOM05D006805 ORTHO05D008656 3.7e-27 126.7 88 71.6
TPR.G21539 Trifolium pratense HOM05D000894 ORTHO05D001833 8.1e-27 125.6 97 64.9
Zm00001eb128340 Zea mays HOM05D006805 ORTHO05D008656 2.6e-25 120.6 205 37.1
HanXRQChr16g0499431 Helianthus annuus HOM05D006805 ORTHO05D008656 1.1e-18 98.6 97 55.7
Dinv10224 Davidia involucrata HOM05D006805 ORTHO05D008656 2.4e-18 97.4 120 45.8
Glyma.10G129950 Glycine max HOM05D006805 ORTHO05D008656 5.3e-18 96.3 75 69.3
Os01g0262700 Oryza sativa ssp. japonica HOM05D006805 ORTHO05D008656 2.6e-17 94.0 153 38.6
HanXRQChr12g0370281 Helianthus annuus HOM05D006805 ORTHO05D008656 1.6e-11 74.7 111 39.6
RcHm_v2.0_Chr2g0136281 Rosa chinensis HOM05D006805 ORTHO05D008656 4.8e-11 73.2 47 74.5
EL10Ac7g17413 Beta vulgaris HOM05D006805 ORTHO05D008656 3.8e-08 63.5 90 35.6
Pp3c26_9360 Physcomitrium patens HOM05D006805 ORTHO05D008656 6.5e-08 62.8 119 33.6
Aa31LG6G13240 Aethionema arabicum HOM05D006805 ORTHO05D008656 1.6e-06 58.2 65 50.8
MD02G1139100 Malus domestica HOM05D006805 ORTHO05D008656 6.1e-06 56.2 50 58.0


User provided reference genes

Program Settings