Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 5.9e-297 1023.5 527 100.0
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 7.8e-265 916.8 529 92.2
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.9e-163 579.3 349 89.7
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 2.9e-163 579.3 349 89.7
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 2.4e-141 506.5 278 90.3
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 3.2e-141 506.1 278 90.3
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.1e-140 503.4 277 89.5
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.6e-129 467.2 278 86.0
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 2.0e-127 460.3 278 84.9
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 4.9e-126 455.7 259 86.9
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 4.9e-126 455.7 259 86.9
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 4.9e-126 455.7 259 86.9
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 1.2e-124 451.1 267 86.1
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 2.1e-124 450.3 258 86.0
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 7.8e-124 448.4 278 83.1
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.5e-122 444.1 276 82.2
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 7.3e-122 441.8 282 82.3
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.6e-121 440.7 276 82.2
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.8e-121 439.9 278 82.4
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 6.9e-120 435.3 278 84.5
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.0e-119 433.7 280 81.4
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 9.9e-119 431.4 278 80.9
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 9.9e-119 431.4 278 80.2
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.3e-118 431.0 239 89.1
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.2e-118 430.3 267 83.1
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 4.9e-118 429.1 329 70.5
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.4e-118 428.7 267 82.8
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.2e-117 426.0 277 79.8
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 5.4e-117 425.6 275 80.7
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 7.1e-117 425.2 276 80.1
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 4.6e-116 422.5 239 87.4
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 7.9e-116 421.8 278 80.6
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.5e-114 417.5 276 79.7
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 4.0e-112 409.5 278 82.7
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 4.0e-112 409.5 232 87.5
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.5e-111 406.0 267 78.7
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.7e-110 404.1 239 86.6
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 6.4e-110 402.1 279 77.1
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 7.1e-109 398.7 278 77.3
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.6e-108 397.5 282 75.5
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 3.4e-103 379.8 276 74.6
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.6e-103 378.6 267 75.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.0e-102 378.3 215 93.5
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.7e-102 377.5 239 80.8
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 2.2e-102 377.1 260 77.3
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.6e-100 370.9 232 82.8
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 7.9e-100 368.6 276 72.5
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 2.3e-99 367.1 259 73.4
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 2.3e-99 367.1 259 73.4
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 2.3e-99 367.1 259 73.4
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 2.3e-99 367.1 259 73.4
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 2.3e-99 367.1 259 73.4
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 2.3e-99 367.1 259 73.4
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.5e-98 363.6 243 79.4
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 2.5e-98 363.6 243 79.4
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 2.5e-98 363.6 243 79.4
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.1e-97 360.5 243 79.0
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.1e-97 360.5 243 79.0
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.1e-97 360.5 248 76.2
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 2.8e-97 360.1 239 80.3
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 8.2e-97 358.6 240 79.2
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 3.8e-94 349.7 231 80.1
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 6.5e-94 349.0 266 70.7
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 4.2e-93 346.3 238 76.1
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.1e-93 345.5 265 70.2
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-86 324.7 252 76.6
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 9.4e-77 292.0 239 72.8
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 9.4e-77 292.0 239 72.8
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-76 291.2 208 75.0
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.1e-76 289.3 266 61.3
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.9e-70 270.4 182 78.0
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-66 258.5 277 54.9
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 9.1e-64 248.8 175 75.4
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 1.3e-62 245.0 160 80.6
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.5e-61 241.5 161 79.5
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.1e-56 225.3 130 88.5
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 7.0e-56 222.6 214 59.8
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.0e-56 222.6 125 87.2
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.7e-54 218.0 200 63.5
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 2.9e-54 217.2 266 50.0
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.5e-53 214.2 120 88.3
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-51 208.0 133 81.2
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 9.8e-50 202.2 124 79.0
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 5.4e-48 196.4 201 60.2
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 3.5e-47 193.7 119 83.2
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 1.6e-44 184.9 113 79.6
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.7e-44 183.3 114 80.7
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 6.1e-44 183.0 87 100.0
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-40 172.2 143 64.3
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.4e-40 171.8 102 85.3
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 2.4e-40 171.0 130 71.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 9.8e-34 149.1 94 80.9
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 3.7e-33 147.1 127 62.2
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.6e-30 136.3 85 82.4
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 4.3e-29 133.7 85 78.8
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 4.3e-29 133.7 86 79.1
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.4e-26 123.6 70 82.9
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 3.7e-25 120.6 74 83.8
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 7.1e-24 116.3 91 68.1
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 9.5e-21 105.9 75 68.0
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 8.1e-20 102.8 60 83.3
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 8.1e-20 102.8 60 83.3
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 8.1e-20 102.8 60 83.3
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.1e-20 102.8 59 81.4
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-16 92.4 74 62.2
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 9.2e-16 89.4 43 95.3
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-14 85.5 83 57.8
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 4.3e-13 80.5 127 41.7
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 5.6e-13 80.1 50 78.0
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-12 78.6 80 56.2
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 4.7e-12 77.0 46 76.1
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-11 75.1 67 61.2
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.5e-10 72.0 38 86.8
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 6.4e-09 66.6 83 48.2
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 3.2e-08 64.3 45 64.4
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 5.4e-08 63.5 69 53.6
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 1.2e-07 62.4 53 62.3
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 4.6e-07 60.5 32 81.2
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 4.6e-07 60.5 32 81.2
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 4.6e-07 60.5 32 81.2


User provided reference genes

Program Settings