Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 1.3e-141 506.9 380 100.0
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.6e-49 201.1 234 98.7
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 2.5e-39 167.2 311 65.3
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 3.3e-39 166.8 234 79.5
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 9.9e-36 155.2 234 79.9
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 2.9e-35 153.7 234 84.6
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 4.2e-34 149.8 194 91.2
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 3.0e-32 143.7 194 85.6
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.1e-32 142.9 235 82.1
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 8.7e-32 142.1 235 80.0
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.3e-29 132.9 234 70.1
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.5e-28 131.3 235 73.6
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.0e-28 131.0 235 77.0
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 3.4e-28 130.2 235 77.9
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.3e-27 128.3 235 62.6
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.7e-27 127.9 235 75.3
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 2.2e-27 127.5 204 69.1
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 2.2e-27 127.5 234 77.4
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 2.2e-27 127.5 235 63.0
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.1e-26 125.2 204 74.0
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 1.1e-26 125.2 235 80.4
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.9e-26 124.4 235 80.0
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 1.9e-26 124.4 240 72.5
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 5.4e-26 122.9 235 75.7
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 9.3e-26 122.1 342 56.1
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.2e-25 121.7 202 69.8
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 2.1e-25 120.9 231 73.6
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 2.1e-25 120.9 234 74.8
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.5e-25 120.2 203 68.0
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.3e-24 117.5 203 74.4
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 3.0e-24 117.1 205 78.5
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 5.1e-24 116.3 235 75.3
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 8.7e-24 115.5 205 80.5
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.5e-23 114.0 232 75.4
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.3e-22 111.7 234 63.7
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 1.6e-22 111.3 236 65.7
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 3.6e-22 110.2 204 72.1
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 6.2e-22 109.4 237 79.7
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.1e-21 108.6 224 66.1
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.4e-21 107.5 234 72.2
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 3.1e-21 107.1 206 76.2
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.0e-21 106.7 234 63.2
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 6.9e-21 105.9 205 56.1
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 9.0e-21 105.5 242 59.1
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 3.4e-20 103.6 204 52.5
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.5e-20 103.2 206 70.9
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 4.5e-20 103.2 237 65.4
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 5.8e-20 102.8 230 71.7
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 5.8e-20 102.8 206 65.0
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 9.9e-20 102.1 202 66.3
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.3e-19 101.7 204 61.8
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 2.2e-19 100.9 203 76.4
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.9e-19 100.5 234 65.4
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 2.9e-19 100.5 234 64.5
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 3.8e-19 100.1 174 66.7
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 6.4e-19 99.4 200 66.5
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 6.4e-19 99.4 206 71.8
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.9e-18 97.8 205 61.5
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.9e-18 97.8 204 57.4
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.4e-18 97.4 145 66.9
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 2.4e-18 97.4 235 67.2
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 5.4e-18 96.3 158 88.0
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 7.1e-18 95.9 235 76.6
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 1.6e-17 94.7 212 58.0
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 1.6e-17 94.7 204 62.3
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 1.6e-17 94.7 201 64.7
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.7e-17 94.0 206 74.8
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.7e-17 94.0 191 71.7
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 3.5e-17 93.6 220 57.3
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 4.6e-17 93.2 204 72.5
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 1.0e-16 92.0 212 60.8
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 3.0e-16 90.5 218 67.0
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.1e-16 89.7 194 75.3
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 6.7e-16 89.4 235 69.4
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 6.7e-16 89.4 196 72.4
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 8.7e-16 89.0 236 73.7
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 1.1e-15 88.6 205 73.7
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.1e-15 88.6 205 73.7
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 2.5e-15 87.4 241 64.3
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 5.6e-15 86.3 115 70.4
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 5.6e-15 86.3 158 74.1
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 7.4e-15 85.9 175 74.3
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.3e-14 85.1 150 59.3
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.3e-14 85.1 157 72.0
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.3e-14 85.1 188 64.4
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.3e-14 85.1 115 48.7
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.1e-14 84.3 202 74.3
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.8e-14 83.2 119 54.6
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 4.8e-14 83.2 212 63.7
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.4e-13 80.9 232 51.3
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 3.1e-13 80.5 129 83.7
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 4.0e-13 80.1 190 65.3
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 4.0e-13 80.1 237 64.1
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 4.0e-13 80.1 158 65.8
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 4.0e-13 80.1 158 65.8
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 4.0e-13 80.1 233 73.8
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 5.3e-13 79.7 194 63.4
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 6.9e-13 79.3 181 64.1
Ciclev10002126m.g Citrus clementina HOM05D003347 ORTHO05D003821 9.0e-13 79.0 235 67.2
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 1.5e-12 78.2 148 69.6
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.5e-12 78.2 235 68.1
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 2.0e-12 77.8 120 63.3
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 4.5e-12 76.6 195 62.6
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 1.3e-11 75.1 229 62.4
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.3e-11 75.1 133 44.4
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 1.7e-11 74.7 194 65.5
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.9e-11 73.9 134 76.1
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 3.8e-11 73.6 158 70.3
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 6.5e-11 72.8 193 46.6
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.1e-10 72.0 231 58.9
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.1e-10 72.0 120 56.7
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 4.2e-10 70.1 202 64.9
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 1.2e-09 68.6 169 47.3
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.6e-09 68.2 120 55.0
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.6e-09 68.2 185 63.8
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 2.1e-09 67.8 258 64.3
AT1G10890 Arabidopsis thaliana HOM05D003347 ORTHO05D003821 2.7e-09 67.4 242 59.5
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.7e-09 67.4 154 60.4
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 3.5e-09 67.0 154 48.1
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 4.6e-09 66.6 73 53.4
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 6.0e-09 66.2 242 64.5
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 1.0e-08 65.5 193 54.4
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 1.8e-08 64.7 134 63.4
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.8e-08 64.7 190 56.8
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.3e-08 64.3 99 59.6
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.3e-08 64.3 104 48.1
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 3.0e-08 63.9 160 53.8
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 5.1e-08 63.2 182 34.1
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.7e-08 62.8 193 57.5
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 8.7e-08 62.4 278 48.6
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.5e-07 61.6 193 56.0
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.5e-07 61.6 116 50.9
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 3.3e-07 60.5 73 52.1
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 4.3e-07 60.1 160 67.5
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.7e-07 59.7 193 54.4
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 5.7e-07 59.7 71 69.0
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 7.4e-07 59.3 83 61.4
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 9.6e-07 58.9 48 66.7
Pp3c9_6610 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.6e-06 58.2 183 63.9
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.1e-06 57.8 91 46.2
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 2.1e-06 57.8 187 58.3
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.1e-06 57.8 160 63.8
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.8e-06 57.4 69 49.3
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 6.2e-06 56.2 84 52.4
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 6.2e-06 56.2 69 49.3


User provided reference genes

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