Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.9e-202 708.4 368 100.0
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.1e-201 706.4 368 99.5
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 2.8e-144 515.8 376 72.3
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.2e-140 501.9 373 72.1
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 2.3e-138 496.1 373 71.0
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.6e-136 490.0 373 71.6
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 8.1e-136 487.6 374 69.8
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 9.9e-134 480.7 374 68.4
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 6.0e-131 471.5 372 67.5
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.3e-130 469.5 348 71.0
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 3.1e-127 459.1 373 67.6
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 2.0e-126 456.4 372 65.1
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.1e-111 407.5 329 68.4
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 5.7e-105 385.2 377 57.0
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.3e-104 384.0 375 57.1
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 7.0e-103 378.3 376 57.2
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 6.5e-101 371.7 373 55.5
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 6.5e-101 371.7 373 55.5
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.9e-100 370.2 370 57.3
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.9e-100 370.2 370 57.3
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.2e-100 369.4 370 57.0
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.6e-99 367.1 374 56.7
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 3.9e-98 362.5 370 55.9
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 6.7e-98 361.7 284 69.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 6.7e-98 361.7 374 55.3
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.0e-97 360.1 372 54.8
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 9.7e-97 357.8 364 55.2
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.2e-96 354.8 368 55.4
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.1e-95 354.4 375 54.1
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.1e-95 354.4 381 54.1
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.4e-95 354.0 368 55.2
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.8e-95 353.6 368 53.3
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.1e-95 352.4 384 52.6
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.0e-95 351.7 368 53.0
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.0e-95 351.7 368 55.4
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-94 350.9 368 54.9
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.5e-94 349.0 368 52.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.2e-93 346.7 369 52.6
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 2.2e-93 346.7 335 57.0
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 3.8e-93 345.9 378 52.9
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.2e-92 342.8 385 52.5
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.4e-92 341.3 368 53.0
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.7e-91 339.7 385 52.2
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 2.7e-91 339.7 381 54.3
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 5.2e-90 335.5 378 51.9
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.8e-90 334.7 368 52.7
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.5e-89 334.0 414 48.8
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.5e-89 331.6 368 52.7
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 9.7e-89 331.3 376 51.6
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.8e-87 327.0 373 51.2
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 2.0e-86 323.6 372 49.5
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.3e-85 320.9 371 52.0
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 6.5e-85 318.5 380 51.6
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.2e-83 314.3 375 49.9
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.7e-83 313.2 383 48.3
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.6e-83 312.8 329 54.4
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 4.0e-82 309.3 370 48.4
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.2e-81 307.8 365 47.4
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 2.0e-81 307.0 320 56.2
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 3.4e-81 306.2 374 48.1
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.4e-81 305.8 337 52.5
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 4.4e-81 305.8 367 48.2
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 9.8e-81 304.7 369 48.0
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 9.8e-81 304.7 375 47.5
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 3.7e-80 302.8 321 54.2
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 4.8e-80 302.4 355 50.1
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 6.3e-80 302.0 351 48.4
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.8e-79 300.4 377 45.9
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 5.4e-79 298.9 364 49.7
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 5.4e-79 298.9 379 47.0
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 7.0e-79 298.5 367 47.4
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.0e-78 297.0 377 45.6
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.7e-78 296.6 367 47.4
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.7e-77 293.9 371 47.4
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 2.3e-77 293.5 365 50.4
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.1e-76 291.2 370 45.4
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 2.5e-76 290.0 367 46.0
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 4.2e-76 289.3 346 48.8
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.6e-75 287.3 371 48.0
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 6.1e-75 285.4 365 45.2
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.8e-74 283.9 367 46.0
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 6.8e-74 282.0 364 49.2
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.0e-73 280.4 367 48.2
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 2.6e-73 280.0 365 44.4
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.6e-73 280.0 364 44.0
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 3.4e-73 279.6 374 46.0
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 7.5e-73 278.5 365 44.9
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.8e-72 276.6 362 45.0
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 8.3e-72 275.0 369 43.6
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.1e-71 274.6 370 45.4
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.4e-71 274.2 380 45.0
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 4.1e-71 272.7 375 42.4
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 5.4e-71 272.3 331 48.3
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 9.2e-71 271.6 307 51.1
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 2.9e-69 266.5 351 45.3
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 3.8e-69 266.2 364 43.1
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 5.0e-69 265.8 365 44.1
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 5.0e-69 265.8 365 44.1
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 6.6e-69 265.4 364 43.4
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.5e-68 263.5 364 42.9
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.5e-68 263.5 364 42.9
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 3.3e-68 263.1 365 43.0
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 3.3e-68 263.1 365 43.0
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 4.3e-68 262.7 401 42.6
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 7.3e-68 261.9 365 43.3
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.6e-67 260.8 364 42.9
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.6e-67 260.8 364 44.2
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 2.8e-67 260.0 366 41.5
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 2.8e-67 260.0 366 41.5
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 4.7e-67 259.2 368 44.0
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 6.1e-67 258.8 365 42.7
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 3.4e-65 253.1 304 49.7
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.7e-64 250.8 365 41.9
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.9e-64 250.0 365 41.9
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 2.9e-64 250.0 357 42.9
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 3.7e-64 249.6 365 41.6
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 3.7e-64 249.6 365 41.6
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.7e-64 249.6 364 41.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 7.0e-63 245.4 346 44.2
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.2e-62 244.6 344 41.0
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 6.6e-61 238.8 379 39.6
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.3e-60 236.5 379 40.6
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 4.7e-59 232.6 330 45.2
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 2.3e-58 230.3 325 42.8
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.5e-57 227.6 383 39.2
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.7e-56 224.2 287 45.3
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.2e-54 218.0 333 40.8
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.7e-51 206.1 279 45.5
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 6.0e-46 189.1 331 37.8
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.3e-45 188.0 194 53.6
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 9.3e-31 138.7 387 31.8
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 3.0e-29 133.7 383 30.5
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.6e-27 127.9 130 58.5
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.8e-27 127.1 137 48.9
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 6.2e-27 125.9 130 56.9
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 3.1e-26 123.6 102 64.7
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.5e-25 121.3 168 40.5
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.9e-24 117.1 258 34.5
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.1e-23 115.2 131 47.3
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.2e-23 113.6 126 47.6
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 9.3e-23 112.1 152 41.4
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.6e-22 111.3 199 37.7
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.0e-21 108.6 377 28.9
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 5.1e-21 106.3 368 27.7
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.6e-17 94.0 381 24.9
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 1.9e-15 87.8 62 77.4
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 3.7e-11 73.6 245 27.3
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 3.7e-11 73.6 107 43.0
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.9e-10 69.3 139 31.7
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 3.2e-07 60.5 82 35.4
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 4.2e-07 60.1 64 50.0
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 4.2e-07 60.1 64 48.4
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 4.2e-07 60.1 54 53.7
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 4.2e-07 60.1 54 53.7
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 7.1e-07 59.3 64 48.4
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 9.3e-07 58.9 65 46.2
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 9.3e-07 58.9 65 46.2
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 7.9e-06 55.8 54 50.0


User provided reference genes

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