Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 2.3e-190 668.7 333 100.0
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 4.2e-155 551.6 274 97.8
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 1.4e-118 430.3 337 68.2
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 4.6e-114 415.2 313 69.6
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 4.6e-114 415.2 297 72.4
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 5.7e-112 408.3 313 68.1
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 6.9e-110 401.4 313 67.1
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 1.3e-103 380.6 338 60.9
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 5.9e-101 371.7 338 60.4
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 1.0e-100 370.9 305 65.2
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 1.2e-98 364.0 358 56.1
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 3.6e-98 362.5 256 71.1
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 3.6e-98 362.5 286 65.0
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 3.9e-97 359.0 361 55.4
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 3.9e-97 359.0 354 56.5
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 5.7e-96 355.1 356 55.1
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 6.3e-95 351.7 256 69.5
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 8.2e-95 351.3 355 54.4
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 8.2e-95 351.3 358 55.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.1e-94 350.9 356 55.3
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 2.4e-94 349.7 361 54.6
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 4.1e-94 349.0 289 61.9
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 9.1e-94 347.8 280 62.9
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 1.6e-93 347.1 363 55.6
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 1.6e-93 347.1 288 63.2
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 2.0e-93 346.7 257 68.5
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 1.0e-92 344.4 257 68.9
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 2.5e-91 339.7 239 71.1
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.6e-90 337.0 289 59.5
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 3.6e-90 335.9 256 66.4
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 6.1e-90 335.1 255 66.3
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 1.4e-89 334.0 230 68.7
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 1.4e-89 334.0 256 64.1
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 2.3e-89 333.2 362 52.5
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 3.0e-89 332.8 353 52.4
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 3.0e-89 332.8 337 54.3
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 3.0e-89 332.8 336 53.9
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 4.0e-89 332.4 289 59.5
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 4.0e-89 332.4 289 59.5
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 4.0e-89 332.4 344 54.1
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 5.2e-89 332.0 254 66.1
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 1.2e-88 330.9 250 68.4
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 4.4e-88 328.9 275 62.9
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 4.4e-88 328.9 225 73.3
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 4.4e-88 328.9 351 53.3
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 7.5e-88 328.2 363 51.8
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 1.3e-87 327.4 256 66.8
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 1.7e-87 327.0 350 53.1
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 3.7e-87 325.9 243 67.5
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 1.4e-86 323.9 317 55.8
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 1.8e-86 323.6 345 51.6
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 1.8e-86 323.6 257 63.0
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 2.4e-86 323.2 288 58.7
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 1.6e-85 320.5 251 64.9
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 2.0e-85 320.1 256 65.6
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 2.7e-85 319.7 225 70.7
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 5.9e-85 318.5 216 73.6
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 7.7e-85 318.2 284 58.1
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.3e-84 317.4 250 62.4
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 1.3e-84 317.4 225 70.7
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 6.5e-84 315.1 239 66.9
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 1.9e-83 313.5 241 64.3
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 1.9e-83 313.5 284 58.8
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 3.2e-83 312.8 227 69.6
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 7.2e-83 311.6 256 62.1
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 9.4e-83 311.2 333 52.0
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 9.4e-83 311.2 345 50.7
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 9.4e-83 311.2 279 59.9
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 1.2e-82 310.8 276 58.7
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 1.2e-82 310.8 309 53.7
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 2.1e-82 310.1 217 70.5
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 2.7e-82 309.7 272 59.9
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 4.7e-82 308.9 349 51.3
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 6.1e-82 308.5 344 50.6
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 1.8e-81 307.0 295 53.9
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 3.0e-81 306.2 280 56.4
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 3.0e-81 306.2 326 51.8
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 5.2e-81 305.4 234 64.1
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 8.8e-81 304.7 286 57.7
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 1.2e-80 304.3 249 63.5
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 2.6e-80 303.1 252 61.9
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 2.6e-80 303.1 252 61.9
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 3.4e-80 302.8 251 62.9
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 3.4e-80 302.8 295 56.3
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 4.4e-80 302.4 284 56.0
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 5.7e-80 302.0 251 62.2
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 5.7e-80 302.0 284 56.0
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 9.8e-80 301.2 290 56.2
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 4.8e-79 298.9 238 63.9
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 6.3e-79 298.5 253 61.7
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 6.3e-79 298.5 189 75.7
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 1.1e-78 297.7 243 63.0
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 2.7e-77 293.1 246 61.0
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 4.5e-77 292.4 235 64.3
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.0e-76 291.2 333 50.5
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 2.9e-76 289.7 361 47.6
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 6.6e-76 288.5 333 50.2
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 1.5e-75 287.3 255 58.0
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 5.5e-75 285.4 183 74.9
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 5.5e-75 285.4 186 72.0
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 7.2e-75 285.0 222 64.9
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 9.5e-75 284.6 333 49.8
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 1.0e-73 281.2 281 54.1
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 2.6e-72 276.6 264 56.4
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 5.7e-72 275.4 189 75.1
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 3.6e-66 256.1 219 60.7
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 6.4e-63 245.4 152 78.3
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 3.0e-60 236.5 209 54.1
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 2.3e-57 226.9 249 50.6
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 3.1e-57 226.5 251 47.0
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 1.2e-56 224.6 237 52.7
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 3.9e-52 209.5 121 81.0
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 3.9e-52 209.5 196 54.6
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 1.4e-49 201.1 168 57.7
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 1.8e-49 200.7 231 47.6
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 6.4e-47 192.2 103 84.5
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 1.9e-46 190.7 181 54.7
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 2.7e-45 186.8 181 52.5
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 1.4e-30 137.9 79 75.9
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 9.3e-30 135.2 69 85.5
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 1.2e-21 108.2 185 42.7
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 5.8e-16 89.4 58 72.4
BolC8t49668H Brassica oleracea HOM05D005712 ORTHO05D032168 2.6e-08 63.9 137 30.7
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 1.4e-06 58.2 50 56.0


User provided reference genes

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