Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 9.2e-232 806.6 428 100.0
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 5.8e-194 681.0 428 86.9
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 5.0e-129 465.3 443 65.2
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.9e-124 449.5 434 64.5
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 3.2e-123 446.0 459 60.3
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 2.3e-118 429.9 455 58.7
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 3.1e-118 429.5 457 59.1
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 7.5e-117 424.9 508 54.5
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 2.2e-116 423.3 439 61.0
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 2.4e-115 419.9 431 59.9
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 4.1e-115 419.1 448 58.5
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-107 393.7 453 55.0
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.5e-104 383.3 479 52.8
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.1e-102 376.3 446 54.3
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.0e-101 373.6 464 52.4
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 2.6e-101 373.2 454 54.2
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 7.1e-99 365.2 393 57.5
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 8.7e-97 358.2 448 52.0
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 8.7e-97 358.2 446 52.0
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.5e-96 357.5 451 54.1
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 5.6e-96 355.5 453 53.0
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 7.3e-96 355.1 449 51.7
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.8e-95 353.2 448 51.8
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.4e-94 350.1 399 54.4
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 5.3e-94 349.0 336 63.7
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 1.5e-93 347.4 470 49.8
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 4.9e-92 342.4 450 50.9
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 7.1e-91 338.6 453 51.0
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 6.0e-90 335.5 437 51.0
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 5.1e-89 332.4 497 46.5
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.1e-86 324.7 444 48.9
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.1e-86 324.7 455 48.6
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.8e-86 323.9 461 48.8
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.4e-85 319.7 440 50.0
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 5.8e-85 318.9 369 52.8
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.7e-84 317.4 440 49.8
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.4e-83 313.5 317 58.0
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 4.2e-83 312.8 466 47.0
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 7.1e-83 312.0 451 48.3
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.7e-82 310.1 441 46.5
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 7.9e-82 308.5 429 49.4
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.8e-81 307.4 399 50.6
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 3.0e-81 306.6 479 45.9
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 6.7e-81 305.4 446 48.2
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 8.7e-81 305.1 374 51.9
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.9e-80 303.9 444 45.9
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 3.7e-79 299.7 445 47.2
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 4.8e-79 299.3 450 46.4
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 6.2e-79 298.9 368 51.9
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.8e-78 297.4 415 50.6
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 4.0e-78 296.2 442 45.7
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 6.9e-78 295.4 465 45.8
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 3.4e-77 293.1 407 50.1
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 5.8e-77 292.4 456 45.4
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 7.6e-77 292.0 461 47.1
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 3.8e-76 289.7 449 45.2
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 1.9e-75 287.3 362 54.4
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 4.2e-75 286.2 384 52.9
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 7.1e-75 285.4 475 42.7
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 7.1e-75 285.4 441 46.3
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 9.3e-75 285.0 336 53.3
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.6e-74 284.3 457 44.6
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 6.0e-74 282.3 450 44.7
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 7.9e-74 282.0 459 45.1
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.8e-73 280.8 446 45.1
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 3.0e-73 280.0 466 44.0
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 6.7e-73 278.9 454 43.6
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.9e-72 277.3 462 44.4
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.9e-72 277.3 468 45.3
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 9.6e-72 275.0 448 46.9
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.1e-71 273.9 454 44.3
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 3.7e-71 273.1 406 45.6
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 6.2e-71 272.3 459 44.0
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 2.4e-70 270.4 445 45.4
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 3.1e-70 270.0 453 42.8
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 2.0e-69 267.3 417 46.5
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 4.5e-69 266.2 445 44.3
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 5.8e-69 265.8 449 44.5
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 5.8e-69 265.8 449 44.5
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.3e-65 254.6 420 45.5
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.1e-64 251.5 452 42.9
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 5.7e-64 249.2 446 42.8
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 5.7e-64 249.2 430 42.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.6e-63 247.7 447 43.6
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 4.8e-63 246.1 452 42.9
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.4e-62 244.6 450 41.1
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.8e-62 244.2 434 41.7
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 5.3e-62 242.7 454 42.7
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 9.0e-62 241.9 447 42.7
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 2.6e-61 240.4 458 40.6
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 4.5e-61 239.6 463 42.5
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 5.9e-61 239.2 422 43.6
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 8.5e-60 235.3 447 41.4
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-59 235.0 465 40.0
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 9.4e-59 231.9 428 41.1
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 9.4e-59 231.9 477 39.8
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 1.2e-58 231.5 382 45.0
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.0e-57 228.4 465 39.4
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 6.7e-57 225.7 466 40.1
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 8.8e-57 225.3 441 40.8
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.3e-56 223.0 365 43.6
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 6.9e-54 215.7 290 50.0
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.0e-53 214.2 382 42.7
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.0e-53 214.2 289 46.4
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.9e-52 210.3 456 38.2
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.4e-51 208.0 420 39.8
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.9e-51 207.6 346 45.4
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 4.7e-50 203.0 285 48.8
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 6.1e-50 202.6 237 53.6
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 3.9e-49 199.9 197 57.9
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.8e-46 191.0 436 36.7
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 2.0e-45 187.6 296 45.6
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 3.5e-45 186.8 353 43.6
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 5.9e-45 186.0 444 36.7
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 5.9e-45 186.0 444 36.7
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 1.1e-43 181.8 235 49.4
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 3.2e-43 180.3 449 36.5
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 4.2e-43 179.9 453 37.1
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 1.4e-41 174.9 140 67.1
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.4e-40 169.1 315 41.9
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 2.4e-38 164.1 170 55.3
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.5e-37 159.8 225 50.2
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 5.9e-37 159.5 305 38.0
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.6e-32 144.1 265 39.6
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.1e-30 137.1 317 35.6
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.8e-28 130.2 161 50.9
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 1.0e-25 122.1 466 29.4
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 4.1e-22 110.2 162 51.2
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 5.4e-22 109.8 162 44.4
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.6e-21 108.2 225 37.8
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.6e-21 108.2 162 50.6
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.1e-14 83.6 227 32.2
arahy.Tifrunner.gnm1.ann1.KUP0VV Arachis hypogaea HOM05D000351 ORTHO05D001519 7.0e-14 82.8 47 91.5
arahy.Tifrunner.gnm1.ann1.6S8GSB Arachis hypogaea HOM05D006491 ORTHO05D008412 1.6e-13 81.6 71 66.2
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 7.8e-13 79.3 83 56.6
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.6e-10 70.5 141 35.5
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 2.3e-09 67.8 113 38.9
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 3.1e-09 67.4 92 44.6
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.0e-08 64.7 93 43.0
MELO3C034566.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.9e-06 58.2 65 44.6
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 4.1e-06 57.0 195 31.8
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 5.4e-06 56.6 104 34.6


User provided reference genes

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