Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CPM77E Arachis hypogaea HOM05D006216 ORTHO05D007760 1.6e-197 692.6 346 100.0
arahy.Tifrunner.gnm1.ann1.G3L2E7 Arachis hypogaea HOM05D006216 ORTHO05D007760 2.5e-195 685.3 346 98.8
Glyma.20G046800 Glycine max HOM05D006216 ORTHO05D007760 4.7e-178 627.9 346 89.3
Glyma.13G072700 Glycine max HOM05D006216 ORTHO05D007760 9.9e-176 620.2 347 88.5
Lj6g0023824 Lotus japonicus HOM05D006216 ORTHO05D007760 2.2e-175 619.0 346 87.6
VMungo1215G0750 Vigna mungo HOM05D006216 ORTHO05D007760 3.8e-175 618.2 346 88.2
Phvul.006G019500 Phaseolus vulgaris HOM05D006216 ORTHO05D007760 4.6e-173 611.3 348 86.8
Lalb_Chr18g0048331 Lupinus albus HOM05D006216 ORTHO05D007760 7.3e-171 604.0 347 85.6
Ca_13675_v3 Cicer arietinum L. HOM05D006216 ORTHO05D007760 8.1e-170 600.5 343 85.7
Lalb_Chr15g0080191 Lupinus albus HOM05D006216 ORTHO05D007760 5.8e-168 594.3 346 84.4
Cfa010159 Carpinus fangiana HOM05D006216 ORTHO05D007760 8.4e-167 590.5 342 83.0
Haze_23545 Corylus avellana HOM05D006216 ORTHO05D007760 1.1e-166 590.1 338 83.7
QL01p020730 Quercus lobata HOM05D006216 ORTHO05D007760 1.1e-166 590.1 339 84.7
TPR.G11861 Trifolium pratense HOM05D006216 ORTHO05D007760 2.4e-166 589.0 346 83.8
Medtr3g437340 Medicago truncatula HOM05D006216 ORTHO05D007760 2.7e-165 585.5 346 83.2
CiPaw.13G146100 Carya illinoinensis HOM05D006216 ORTHO05D007760 3.5e-165 585.1 338 82.5
MELO3C015605.2 Cucumis melo HOM05D006216 ORTHO05D007760 2.3e-164 582.4 336 84.8
Psat5g182280 Pisum sativum HOM05D006216 ORTHO05D007760 3.3e-163 578.6 345 82.3
Sed0006982 Sechium edule HOM05D006216 ORTHO05D007760 4.3e-163 578.2 339 82.6
RcHm_v2.0_Chr5g0050131 Rosa chinensis HOM05D006216 ORTHO05D007760 5.6e-163 577.8 335 83.9
Thecc.09G251000 Theobroma cacao HOM05D006216 ORTHO05D007760 7.3e-163 577.4 332 83.7
TAR633G2593 Trochodendron aralioides HOM05D006216 ORTHO05D007760 1.3e-162 576.6 343 81.9
MD03G1163100 Malus domestica HOM05D006216 ORTHO05D007760 2.1e-162 575.9 331 85.5
Manes.02G134400 Manihot esculenta HOM05D006216 ORTHO05D007760 8.1e-162 573.9 340 83.2
Actinidia07007 Actinidia chinensis HOM05D006216 ORTHO05D007760 1.4e-161 573.2 336 82.7
CsaV3_1G041900 Cucumis sativus L. HOM05D006216 ORTHO05D007760 1.4e-161 573.2 336 83.3
Gohir.A07G119000 Gossypium hirsutum HOM05D006216 ORTHO05D007760 5.3e-161 571.2 332 83.4
Gohir.D07G123300 Gossypium hirsutum HOM05D006216 ORTHO05D007760 5.3e-161 571.2 332 83.4
Eucgr.J00662 Eucalyptus grandis HOM05D006216 ORTHO05D007760 3.4e-160 568.5 332 81.0
CSS0031944 Camellia sinensis var. sinensis HOM05D006216 ORTHO05D007760 5.8e-160 567.8 336 81.5
Dinv29341 Davidia involucrata HOM05D006216 ORTHO05D007760 7.6e-160 567.4 344 81.4
CANSAT54G1188 Cannabis sativa HOM05D006216 ORTHO05D007760 9.9e-160 567.0 333 82.6
Gorai.001G133000 Gossypium raimondii HOM05D006216 ORTHO05D007760 2.2e-159 565.8 335 82.7
Potri.001G225100 Populus trichocarpa HOM05D006216 ORTHO05D007760 2.9e-159 565.5 332 81.9
Duzib168G1114 Durio zibethinus HOM05D006216 ORTHO05D007760 3.8e-159 565.1 332 83.7
Manes.01G176400 Manihot esculenta HOM05D006216 ORTHO05D007760 3.8e-159 565.1 333 82.9
THA.LOC104816956 Tarenaya hassleriana HOM05D006216 ORTHO05D007760 3.8e-159 565.1 331 81.9
PGR119G0354 Punica granatum HOM05D006216 ORTHO05D007760 4.9e-159 564.7 344 80.2
TWI31G0496 Tripterygium wilfordii HOM05D006216 ORTHO05D007760 4.9e-159 564.7 335 82.4
TWI75G0612 Tripterygium wilfordii HOM05D006216 ORTHO05D007760 6.4e-159 564.3 329 83.0
AUR62024257 Chenopodium quinoa HOM05D006216 ORTHO05D007760 2.4e-158 562.4 334 82.0
Ciclev10015579m.g Citrus clementina HOM05D006216 ORTHO05D007760 2.4e-158 562.4 340 80.3
FAN21G1147 Fragaria x ananassa HOM05D006216 ORTHO05D007760 4.2e-158 561.6 339 82.0
FvH4_3g27650 Fragaria vesca HOM05D006216 ORTHO05D007760 5.4e-158 561.2 339 82.0
FAN11G0826 Fragaria x ananassa HOM05D006216 ORTHO05D007760 5.4e-158 561.2 339 82.0
FAN25G0225 Fragaria x ananassa HOM05D006216 ORTHO05D007760 9.3e-158 560.5 339 82.0
A07p17910 Brassica napus HOM05D006216 ORTHO05D007760 1.2e-157 560.1 331 80.4
BraA07t29509Z Brassica rapa HOM05D006216 ORTHO05D007760 1.2e-157 560.1 331 80.4
CSS0004136 Camellia sinensis var. sinensis HOM05D006216 ORTHO05D007760 1.2e-157 560.1 343 79.0
Thhalv10002004m.g Eutrema salsugineum HOM05D006216 ORTHO05D007760 1.2e-157 560.1 334 79.3
Sp4g08430 Schrenkiella parvula HOM05D006216 ORTHO05D007760 1.2e-157 560.1 331 80.1
Nitab4.5_0002300g0020 Nicotiana tabacum HOM05D006216 ORTHO05D007760 1.6e-157 559.7 332 81.9
vmacro04357 Vaccinium macrocarpon HOM05D006216 ORTHO05D007760 2.1e-157 559.3 331 82.5
Sopen01g004500 Solanum pennellii HOM05D006216 ORTHO05D007760 2.7e-157 558.9 331 81.6
CARHR119100 Cardamine hirsuta HOM05D006216 ORTHO05D007760 3.5e-157 558.5 331 80.1
GSVIVG01037382001 Vitis vinifera HOM05D006216 ORTHO05D007760 3.5e-157 558.5 332 81.0
BcaC02g10847 Brassica carinata HOM05D006216 ORTHO05D007760 4.6e-157 558.1 334 79.3
C04p24560 Brassica napus HOM05D006216 ORTHO05D007760 4.6e-157 558.1 334 79.3
BolC4t23960H Brassica oleracea HOM05D006216 ORTHO05D007760 4.6e-157 558.1 334 79.0
BcaB02g10053 Brassica carinata HOM05D006216 ORTHO05D007760 6.0e-157 557.8 334 78.7
Solyc01g009010.3 Solanum lycopersicum HOM05D006216 ORTHO05D007760 6.0e-157 557.8 331 81.6
AT2G26930 Arabidopsis thaliana HOM05D006216 ORTHO05D007760 7.9e-157 557.4 331 79.8
Hma1.2p1_1843F.1_g305010 Hydrangea macrophylla HOM05D006216 ORTHO05D007760 7.9e-157 557.4 324 83.6
Lj2A825T28 Lonicera japonica HOM05D006216 ORTHO05D007760 7.9e-157 557.4 338 79.9
Potri.009G021800 Populus trichocarpa HOM05D006216 ORTHO05D007760 7.9e-157 557.4 325 82.8
PGSC0003DMG400022703 Solanum tuberosum HOM05D006216 ORTHO05D007760 1.0e-156 557.0 331 81.6
Carub.0004s0743 Capsella rubella HOM05D006216 ORTHO05D007760 2.3e-156 555.8 332 79.5
AUR62005484 Chenopodium quinoa HOM05D006216 ORTHO05D007760 3.0e-156 555.4 323 83.3
MSTRG.12426 Avicennia marina HOM05D006216 ORTHO05D007760 6.7e-156 554.3 336 78.9
SalBow6G4438 Salvia bowleyana HOM05D006216 ORTHO05D007760 1.1e-155 553.5 332 79.8
AL4G20170 Arabidopsis lyrata HOM05D006216 ORTHO05D007760 1.5e-155 553.1 331 79.5
CAN.G714.2 Capsicum annuum HOM05D006216 ORTHO05D007760 1.5e-155 553.1 332 80.7
ECA238G2733 Erigeron canadensis HOM05D006216 ORTHO05D007760 1.9e-155 552.7 338 79.0
Migut.D00703 Erythranthe guttata HOM05D006216 ORTHO05D007760 2.5e-155 552.4 331 79.5
PSO339G5720 Papaver somniferum HOM05D006216 ORTHO05D007760 2.5e-155 552.4 334 79.3
Peaxi162Scf00050g02022 Petunia axillaris HOM05D006216 ORTHO05D007760 5.6e-155 551.2 339 79.9
Cc01_g07140 Coffea canephora HOM05D006216 ORTHO05D007760 7.4e-155 550.8 330 81.5
ClCG03G014320 Citrullus lanatus HOM05D006216 ORTHO05D007760 2.8e-154 548.9 336 81.0
PSO384G3582 Papaver somniferum HOM05D006216 ORTHO05D007760 2.8e-154 548.9 334 78.4
Nn7g37015 Nelumbo nucifera HOM05D006216 ORTHO05D007760 2.4e-153 545.8 318 84.0
Hund25392 Selenicereus undatus HOM05D006216 ORTHO05D007760 3.1e-153 545.4 341 78.9
HanXRQChr14g0433421 Helianthus annuus HOM05D006216 ORTHO05D007760 5.8e-152 541.2 334 78.7
Sc04g0009550 Simmondsia chinensis HOM05D006216 ORTHO05D007760 7.6e-152 540.8 334 77.5
Aa31LG5G8850 Aethionema arabicum HOM05D006216 ORTHO05D007760 4.9e-151 538.1 374 71.1
MSTRG.21323 Avicennia marina HOM05D006216 ORTHO05D007760 6.4e-151 537.7 329 78.1
Rhsim13G0202500 Rhododendron simsii HOM05D006216 ORTHO05D007760 6.4e-151 537.7 336 79.8
Lsat_1_v5_gn_2_36221 Lactuca sativa HOM05D006216 ORTHO05D007760 8.4e-151 537.3 338 77.2
Os01g0802100 Oryza sativa ssp. japonica HOM05D006216 ORTHO05D007760 1.4e-150 536.6 338 75.7
SGA_v2.0_scaffold79G25547 Striga asiatica HOM05D006216 ORTHO05D007760 2.4e-150 535.8 360 74.7
Sabra16G0133700 Salix brachista HOM05D006216 ORTHO05D007760 5.5e-150 534.6 384 70.3
Zm00001eb150630 Zea mays HOM05D006216 ORTHO05D007760 4.6e-149 531.6 330 76.7
ATR0782G058 Amborella trichopoda HOM05D006216 ORTHO05D007760 1.6e-146 523.1 333 74.8
Aqoxy1G00047 Aquilegia oxysepala HOM05D006216 ORTHO05D007760 3.7e-146 521.9 335 75.8
Atru.BG.104.p Acer truncatum HOM05D006216 ORTHO05D007760 6.2e-146 521.2 299 85.3
CDE08G0663 Ceratophyllum demersum HOM05D006216 ORTHO05D007760 2.4e-145 519.2 312 80.4
CDE09G0516 Ceratophyllum demersum HOM05D006216 ORTHO05D007760 1.7e-143 513.1 342 74.3
EL10Ac6g13846 Beta vulgaris HOM05D006216 ORTHO05D007760 1.1e-139 500.4 325 75.4
Migut.N02401 Erythranthe guttata HOM05D006216 ORTHO05D007760 1.5e-139 500.0 311 77.8
DCAR_006327 Daucus carota HOM05D006216 ORTHO05D007760 5.3e-137 491.5 340 73.2
unitig_27.g25131 Utricularia gibba HOM05D006216 ORTHO05D007760 1.7e-135 486.5 337 73.3
Atru.chr3.2830 Acer truncatum HOM05D006216 ORTHO05D007760 2.2e-135 486.1 277 85.2
HPP92_001661 Vanilla planifolia HOM05D006216 ORTHO05D007760 4.2e-134 481.9 356 69.4
Nitab4.5_0000428g0050 Nicotiana tabacum HOM05D006216 ORTHO05D007760 1.2e-133 480.3 320 75.0
Pp3c26_490 Physcomitrium patens HOM05D006216 ORTHO05D007760 5.1e-132 474.9 329 69.0
Mapoly0033s0031 Marchantia polymorpha HOM05D006216 ORTHO05D007760 1.1e-131 473.8 339 67.8
SMO367G1046 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 6.9e-129 464.5 327 69.4
CBR_g22270 Chara braunii HOM05D006216 ORTHO05D007760 1.4e-116 423.7 328 61.6
Hma1.2p1_1843F.1_g305000 Hydrangea macrophylla HOM05D006216 ORTHO05D007760 5.2e-116 421.8 244 84.0
AagrBONN_evm.TU.Sc2ySwM_228.3849 Anthoceros agrestis HOM05D006216 ORTHO05D007760 7.7e-112 407.9 286 70.6
MBI19_g37419_MAGBIO Magnolia biondii HOM05D006216 ORTHO05D007760 1.0e-108 397.5 324 63.6
Prupe.4G269400 Prunus persica HOM05D006216 ORTHO05D007760 1.1e-105 387.5 218 85.8
MCO08G209 Micromonas commoda HOM05D006216 ORTHO05D007760 1.7e-87 327.0 296 55.4
Cre02.g145050 Chlamydomonas reinhardtii HOM05D006216 ORTHO05D007760 2.9e-82 309.7 292 53.1
PRCOL_00004294 Prasinoderma coloniale HOM05D006216 ORTHO05D007760 4.9e-82 308.9 300 50.0
Sabra09G0013700 Salix brachista HOM05D006216 ORTHO05D007760 5.4e-81 305.4 290 57.6
SEGI_15556 Sequoiadendron giganteum HOM05D006216 ORTHO05D007760 5.2e-76 288.9 187 74.9
Glyma.17G179800 Glycine max HOM05D006216 ORTHO05D007760 1.3e-71 274.2 181 77.9
Hund17544 Selenicereus undatus HOM05D006216 ORTHO05D007760 2.6e-51 206.8 177 60.5
SEGI_04634 Sequoiadendron giganteum HOM05D006216 ORTHO05D007760 2.6e-51 206.8 130 73.1
FAN26G0546 Fragaria x ananassa HOM05D006216 ORTHO05D010609 3.8e-42 176.4 113 77.0
SMO332G0003 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 1.1e-33 148.3 102 69.6
SMO332G0042 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 1.3e-26 124.8 107 57.9
Oeu063625.1 Olea europaea HOM05D006216 ORTHO05D007760 8.7e-23 112.1 67 79.1
Ca_29165_v3 Cicer arietinum L. HOM05D006216 ORTHO05D007760 2.4e-20 104.0 161 38.5
SMO198G0007 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 6.9e-20 102.4 106 51.9
Hund00952 Selenicereus undatus HOM05D006216 ORTHO05D007760 1.7e-18 97.8 64 73.4
DCAR_006325 Daucus carota HOM05D006216 ORTHO05D007760 5.1e-15 86.3 57 68.4


User provided reference genes

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