Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CLNG3D Arachis hypogaea HOM05D015962 ORTHO05D003000 8.2e-85 317.0 159 100.0
arahy.Tifrunner.gnm1.ann1.YS6756 Arachis hypogaea HOM05D015962 ORTHO05D003000 7.0e-68 260.8 198 70.2
arahy.Tifrunner.gnm1.ann1.N3JAWC Arachis hypogaea HOM05D015962 ORTHO05D085643 8.9e-47 190.7 140 73.6
arahy.Tifrunner.gnm1.ann1.B9URUB Arachis hypogaea HOM05D015962 ORTHO05D083682 1.2e-40 170.2 177 55.4
arahy.Tifrunner.gnm1.ann1.KUDF2Y Arachis hypogaea HOM05D015962 ORTHO05D084632 3.7e-37 158.7 180 55.0
arahy.Tifrunner.gnm1.ann1.UWF6SM Arachis hypogaea HOM05D015962 ORTHO05D003000 1.9e-28 129.8 206 44.7
arahy.Tifrunner.gnm1.ann1.ATL7J3 Arachis hypogaea HOM05D002658 ORTHO05D003000 7.3e-17 91.3 58 77.6
arahy.Tifrunner.gnm1.ann1.3J1WFH Arachis hypogaea HOM05D002658 ORTHO05D003000 3.6e-16 89.0 123 48.8
arahy.Tifrunner.gnm1.ann1.W1BWJE Arachis hypogaea HOM05D002658 ORTHO05D003000 6.2e-16 88.2 52 88.5
arahy.Tifrunner.gnm1.ann1.0M52J5 Arachis hypogaea HOM05D002658 ORTHO05D003000 1.8e-15 86.7 52 86.5
arahy.Tifrunner.gnm1.ann1.ZR7NP5 Arachis hypogaea HOM05D002658 ORTHO05D003000 3.1e-15 85.9 47 91.5
arahy.Tifrunner.gnm1.ann1.2FX3XX Arachis hypogaea HOM05D015962 ORTHO05D003000 4.0e-15 85.5 58 72.4
arahy.Tifrunner.gnm1.ann1.USEI7V Arachis hypogaea HOM05D002658 ORTHO05D003000 5.3e-15 85.1 56 78.6
arahy.Tifrunner.gnm1.ann1.0NW6FM Arachis hypogaea HOM05D015962 ORTHO05D003000 1.2e-11 73.9 43 86.0
arahy.Tifrunner.gnm1.ann1.X9ZCKB Arachis hypogaea HOM05D003897 ORTHO05D003000 7.9e-11 71.2 43 81.4
arahy.Tifrunner.gnm1.ann1.7I62GA Arachis hypogaea HOM05D005459 ORTHO05D006751 3.9e-10 68.9 36 100.0
arahy.Tifrunner.gnm1.ann1.QW5IMS Arachis hypogaea HOM05D005459 ORTHO05D006751 3.9e-10 68.9 36 100.0
Lj6g0006101 Lotus japonicus HOM05D005459 ORTHO05D006751 6.6e-10 68.2 42 83.3
Lalb_Chr10g0091331 Lupinus albus HOM05D005459 ORTHO05D006751 8.7e-10 67.8 42 81.0
Glyma.10G065800 Glycine max HOM05D005459 ORTHO05D006751 1.9e-09 66.6 42 78.6
Lj3C911T3 Lonicera japonica HOM05D005459 ORTHO05D006751 1.9e-09 66.6 62 59.7
Phvul.001G060700 Phaseolus vulgaris HOM05D005459 ORTHO05D006751 1.9e-09 66.6 42 78.6
VMungo0647G0684 Vigna mungo HOM05D005459 ORTHO05D006751 3.3e-09 65.9 42 78.6
ClCG05G008710 Citrullus lanatus HOM05D005459 ORTHO05D006751 4.3e-09 65.5 62 58.1
Glyma.14G160900 Glycine max HOM05D005459 ORTHO05D006751 4.3e-09 65.5 47 70.2
Medtr7g100940 Medicago truncatula HOM05D005459 ORTHO05D006751 4.3e-09 65.5 62 59.7
arahy.Tifrunner.gnm1.ann1.4K87U1 Arachis hypogaea HOM05D000240 ORTHO05D001140 7.3e-09 64.7 46 65.2
arahy.Tifrunner.gnm1.ann1.M376CB Arachis hypogaea HOM05D000240 ORTHO05D001140 7.3e-09 64.7 46 65.2
Ca_12679_v3 Cicer arietinum L. HOM05D005459 ORTHO05D006751 7.3e-09 64.7 42 78.6
Medtr1g028510 Medicago truncatula HOM05D005459 ORTHO05D006751 7.3e-09 64.7 42 78.6
Psat6g038640 Pisum sativum HOM05D005459 ORTHO05D006751 7.3e-09 64.7 42 78.6
TPR.G33293 Trifolium pratense HOM05D005459 ORTHO05D006751 7.3e-09 64.7 42 78.6
Sed0000581 Sechium edule HOM05D005459 ORTHO05D006751 9.6e-09 64.3 62 56.5
QL09p010988 Quercus lobata HOM05D005459 ORTHO05D006751 1.3e-08 63.9 62 56.5
BcaC06g31482 Brassica carinata HOM05D005459 ORTHO05D006751 1.6e-08 63.5 64 54.7
TAR629G0401 Trochodendron aralioides HOM05D005459 ORTHO05D006751 1.6e-08 63.5 62 56.5
PSO135G0062 Papaver somniferum HOM05D005459 ORTHO05D006751 2.1e-08 63.2 64 56.2
PSO384G0956 Papaver somniferum HOM05D005459 ORTHO05D006751 2.1e-08 63.2 64 56.2
EL10Ac3g05347 Beta vulgaris HOM05D005459 ORTHO05D006751 3.6e-08 62.4 62 54.8
COL.COLO4_35657 Corchorus olitorius HOM05D005459 ORTHO05D006751 3.6e-08 62.4 62 54.8
GSVIVG01028720001 Vitis vinifera HOM05D005459 ORTHO05D006751 3.6e-08 62.4 62 54.8
DCAR_024416 Daucus carota HOM05D005459 ORTHO05D006751 4.8e-08 62.0 62 54.8
Medtr4g071900 Medicago truncatula HOM05D000240 ORTHO05D001140 4.8e-08 62.0 46 60.9
AUR62006152 Chenopodium quinoa HOM05D005459 ORTHO05D006751 6.2e-08 61.6 62 54.8
AUR62019336 Chenopodium quinoa HOM05D005459 ORTHO05D006751 6.2e-08 61.6 62 54.8
Ca_20934_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001140 6.2e-08 61.6 45 64.4
MELO3C026934.2 Cucumis melo HOM05D005459 ORTHO05D006751 6.2e-08 61.6 62 54.8
Gohir.A12G251800 Gossypium hirsutum HOM05D005459 ORTHO05D006751 6.2e-08 61.6 62 54.8
Gohir.D12G252700 Gossypium hirsutum HOM05D005459 ORTHO05D006751 6.2e-08 61.6 62 54.8
Gohir.D12G253700 Gossypium hirsutum HOM05D005459 ORTHO05D006751 6.2e-08 61.6 62 54.8
Gorai.008G270800 Gossypium raimondii HOM05D005459 ORTHO05D006751 6.2e-08 61.6 62 54.8
MBI06_g32757_MAGBIO Magnolia biondii HOM05D005459 ORTHO05D006751 6.2e-08 61.6 62 54.8
PGR142G2821 Punica granatum HOM05D005459 ORTHO05D006751 6.2e-08 61.6 62 54.8
BolC7t43505H Brassica oleracea HOM05D005459 ORTHO05D006751 8.1e-08 61.2 64 53.1
Dinv35306 Davidia involucrata HOM05D005459 ORTHO05D006751 8.1e-08 61.2 67 52.2
Duzib084G0355 Durio zibethinus HOM05D005459 ORTHO05D006751 8.1e-08 61.2 62 53.2
Thecc.03G192700 Theobroma cacao HOM05D005459 ORTHO05D006751 8.1e-08 61.2 62 53.2
Zm00001eb137120 Zea mays HOM05D005459 ORTHO05D006751 8.1e-08 61.2 42 66.7
Zm00001eb410070 Zea mays HOM05D005459 ORTHO05D006751 8.1e-08 61.2 43 65.1
Atru.chr1.246 Acer truncatum HOM05D005459 ORTHO05D006751 1.1e-07 60.8 36 80.6
C07p29540 Brassica napus HOM05D005459 ORTHO05D006751 1.1e-07 60.8 64 51.6
Lj3g0011348 Lotus japonicus HOM05D000240 ORTHO05D001140 1.1e-07 60.8 46 60.9
MD07G1285000 Malus domestica HOM05D005459 ORTHO05D006751 1.1e-07 60.8 62 54.8
Psat7g139880 Pisum sativum HOM05D000240 ORTHO05D001140 1.1e-07 60.8 46 58.7
THA.LOC104813180 Tarenaya hassleriana HOM05D005459 ORTHO05D006751 1.1e-07 60.8 63 54.0
Actinidia03157 Actinidia chinensis HOM05D005459 ORTHO05D006751 1.4e-07 60.5 62 54.8
CANSAT64G0927 Cannabis sativa HOM05D005459 ORTHO05D006751 1.4e-07 60.5 62 54.8
CsaV3_3G021950 Cucumis sativus L. HOM05D005459 ORTHO05D006751 1.4e-07 60.5 62 53.2
Lsat_1_v5_gn_2_134221 Lactuca sativa HOM05D005459 ORTHO05D006751 1.4e-07 60.5 63 54.0
Rhsim09G0203700 Rhododendron simsii HOM05D005459 ORTHO05D006751 1.4e-07 60.5 62 56.5
Hund04829 Selenicereus undatus HOM05D005459 ORTHO05D006751 1.4e-07 60.5 62 54.8
TWI39G1077 Tripterygium wilfordii HOM05D005459 ORTHO05D006751 1.4e-07 60.5 63 52.4
ATR0661G386 Amborella trichopoda HOM05D005459 ORTHO05D006751 1.8e-07 60.1 62 54.8
Lalb_Chr19g0138961 Lupinus albus HOM05D000240 ORTHO05D001140 1.8e-07 60.1 46 60.9
Ah.13g069870 Amaranthus hybridus HOM05D005459 ORTHO05D006751 2.4e-07 59.7 62 51.6
Aqoxy7G00148 Aquilegia oxysepala HOM05D005459 ORTHO05D006751 2.4e-07 59.7 62 51.6
A06p46000 Brassica napus HOM05D005459 ORTHO05D006751 2.4e-07 59.7 64 51.6
BraA06t27464Z Brassica rapa HOM05D005459 ORTHO05D006751 2.4e-07 59.7 64 51.6
CSS0021725 Camellia sinensis var. sinensis HOM05D005459 ORTHO05D006751 2.4e-07 59.7 62 53.2
Cfa016362 Carpinus fangiana HOM05D005459 ORTHO05D006751 2.4e-07 59.7 62 53.2
Ciclev10007115m.g Citrus clementina HOM05D005459 ORTHO05D006751 2.4e-07 59.7 62 53.2
Haze_00111 Corylus avellana HOM05D005459 ORTHO05D006751 2.4e-07 59.7 62 53.2
Eucgr.K00329 Eucalyptus grandis HOM05D005459 ORTHO05D006751 2.4e-07 59.7 62 54.8
Nn3g17990 Nelumbo nucifera HOM05D005459 ORTHO05D006751 2.4e-07 59.7 62 56.5
SHI02435 Sapria himalayana HOM05D005459 ORTHO05D006751 2.4e-07 59.7 42 73.8
TPR.G22383 Trifolium pratense HOM05D000240 ORTHO05D001140 2.4e-07 59.7 49 57.1
AL7G47930 Arabidopsis lyrata HOM05D005459 ORTHO05D006751 3.1e-07 59.3 64 51.6
AT5G41480 Arabidopsis thaliana HOM05D005459 ORTHO05D006751 3.1e-07 59.3 64 51.6
arahy.Tifrunner.gnm1.ann1.PC551Y Arachis hypogaea HOM05D000240 ORTHO05D013495 3.1e-07 59.3 46 58.7
CiPaw.06G007500 Carya illinoinensis HOM05D005459 ORTHO05D006751 3.1e-07 59.3 62 54.8
HanXRQChr14g0462841 Helianthus annuus HOM05D005459 ORTHO05D006751 3.1e-07 59.3 62 54.8
Ca_05174_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001140 4.0e-07 58.9 35 77.1
Thhalv10027718m.g Eutrema salsugineum HOM05D005459 ORTHO05D006751 4.0e-07 58.9 64 51.6
Phvul.011G038800 Phaseolus vulgaris HOM05D000240 ORTHO05D001140 4.0e-07 58.9 46 58.7
Cpa.g.sc3.50 Carica papaya HOM05D005459 ORTHO05D006751 5.3e-07 58.5 47 63.8
CDE02G4072 Ceratophyllum demersum HOM05D005459 ORTHO05D006751 5.3e-07 58.5 63 46.0
ECA246G1562 Erigeron canadensis HOM05D005459 ORTHO05D006751 5.3e-07 58.5 62 53.2
Hma1.2p1_0327F.1_g126720 Hydrangea macrophylla HOM05D005459 ORTHO05D006751 5.3e-07 58.5 62 54.8
Hma1.2p1_0327F.1_g126730 Hydrangea macrophylla HOM05D005459 ORTHO05D006751 5.3e-07 58.5 62 54.8
Solyc06g051900.3 Solanum lycopersicum HOM05D005459 ORTHO05D006751 5.3e-07 58.5 35 85.7
Sopen06g017930 Solanum pennellii HOM05D005459 ORTHO05D006751 5.3e-07 58.5 35 85.7
PGSC0003DMG400002352 Solanum tuberosum HOM05D005459 ORTHO05D006751 5.3e-07 58.5 35 85.7
vmacro10106 Vaccinium macrocarpon HOM05D005459 ORTHO05D006751 5.3e-07 58.5 62 54.8
Sc13g0009590 Simmondsia chinensis HOM05D005459 ORTHO05D006751 6.9e-07 58.2 42 71.4
HPP92_026772 Vanilla planifolia HOM05D005459 ORTHO05D006751 6.9e-07 58.2 62 48.4
Lalb_Chr23g0265131 Lupinus albus HOM05D000240 ORTHO05D001140 9.0e-07 57.8 49 55.1
Lalb_Chr23g0265151 Lupinus albus HOM05D000240 ORTHO05D001140 9.0e-07 57.8 49 55.1
Carub.0007s3402 Capsella rubella HOM05D005459 ORTHO05D006751 1.2e-06 57.4 64 50.0
SMO118G0218 Selaginella moellendorffii HOM05D005459 ORTHO05D006751 1.2e-06 57.4 42 71.4
TAR145G0003 Trochodendron aralioides HOM05D000240 ORTHO05D001140 1.2e-06 57.4 49 53.1
CAN.G394.13 Capsicum annuum HOM05D005459 ORTHO05D006751 1.5e-06 57.0 34 85.3
Peaxi162Scf00618g00514 Petunia axillaris HOM05D005459 ORTHO05D006751 1.5e-06 57.0 36 80.6
Sp7g00510 Schrenkiella parvula HOM05D005459 ORTHO05D006751 1.5e-06 57.0 64 50.0
VMungo1127G0831 Vigna mungo HOM05D000240 ORTHO05D001140 1.5e-06 57.0 46 58.7
Aa31LG9G520 Aethionema arabicum HOM05D005459 ORTHO05D006751 2.0e-06 56.6 64 48.4
Prupe.2G307100 Prunus persica HOM05D005459 ORTHO05D006751 2.0e-06 56.6 36 80.6
Glyma.11G110800 Glycine max HOM05D000240 ORTHO05D001140 2.6e-06 56.2 46 56.5
Lalb_Chr03g0025351 Lupinus albus HOM05D000240 ORTHO05D001140 2.6e-06 56.2 31 80.6
Manes.06G157100 Manihot esculenta HOM05D005459 ORTHO05D006751 3.4e-06 55.8 48 58.3
Nitab4.5_0004934g0010 Nicotiana tabacum HOM05D005459 ORTHO05D006751 3.4e-06 55.8 35 82.9
CAN.G589.10 Capsicum annuum HOM05D005459 ORTHO05D006751 4.5e-06 55.5 34 82.4
FvH4_7g31010 Fragaria vesca HOM05D005459 ORTHO05D006751 4.5e-06 55.5 36 77.8
FAN01G1429 Fragaria x ananassa HOM05D005459 ORTHO05D006751 4.5e-06 55.5 36 77.8
FAN03G0338 Fragaria x ananassa HOM05D005459 ORTHO05D006751 4.5e-06 55.5 36 77.8
FAN06G0889 Fragaria x ananassa HOM05D005459 ORTHO05D006751 4.5e-06 55.5 36 77.8
FAN06G3802 Fragaria x ananassa HOM05D005459 ORTHO05D006751 4.5e-06 55.5 36 77.8
FAN10G1158 Fragaria x ananassa HOM05D005459 ORTHO05D006751 4.5e-06 55.5 36 77.8
RcHm_v2.0_Chr1g0380091 Rosa chinensis HOM05D005459 ORTHO05D006751 4.5e-06 55.5 36 77.8
arahy.Tifrunner.gnm1.ann1.7FBU4T Arachis hypogaea HOM05D003897 ORTHO05D005095 5.8e-06 55.1 52 65.4
arahy.Tifrunner.gnm1.ann1.9R7E2G Arachis hypogaea HOM05D003897 ORTHO05D005095 5.8e-06 55.1 52 65.4
arahy.Tifrunner.gnm1.ann1.I4XWR0 Arachis hypogaea HOM05D003897 ORTHO05D005095 5.8e-06 55.1 50 66.0
Dinv42000 Davidia involucrata HOM05D000240 ORTHO05D001140 5.8e-06 55.1 49 53.1
Glyma.12G037100 Glycine max HOM05D000240 ORTHO05D001140 5.8e-06 55.1 46 54.3
Lj1g0000591 Lotus japonicus HOM05D000240 ORTHO05D001140 5.8e-06 55.1 46 52.2
Potri.015G022400 Populus trichocarpa HOM05D005459 ORTHO05D006751 5.8e-06 55.1 62 50.0
VMungo1309G1098 Vigna mungo HOM05D000240 ORTHO05D001140 7.6e-06 54.7 49 51.0
SGA_v2.0_scaffold80G25876 Striga asiatica HOM05D000240 ORTHO05D001140 9.9e-06 54.3 45 55.6


User provided reference genes

Program Settings