Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 5.5e-273 943.7 487 100.0
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 1.1e-265 919.5 487 98.4
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 1.6e-200 703.0 442 80.8
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 3.6e-200 701.8 420 82.9
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 3.4e-198 695.3 413 82.8
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 1.9e-196 689.5 414 82.4
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 5.4e-196 688.0 411 83.2
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 7.8e-195 684.1 410 83.2
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 9.6e-193 677.2 420 82.6
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 1.4e-191 673.3 420 81.9
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 2.9e-181 639.0 418 75.8
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 3.8e-181 638.6 419 76.6
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 3.5e-179 632.1 414 75.8
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 8.7e-178 627.5 420 74.8
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.9e-177 626.3 420 74.8
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 7.4e-177 624.4 420 74.5
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 8.1e-176 620.9 440 72.0
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 3.1e-175 619.0 427 72.6
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 2.6e-174 615.9 414 72.5
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 2.9e-173 612.5 420 72.6
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 3.8e-173 612.1 420 72.6
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 6.5e-173 611.3 420 71.9
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 6.5e-173 611.3 405 75.1
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 3.5e-171 605.5 418 72.5
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.9e-171 604.4 418 72.2
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.9e-171 604.4 418 72.5
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.1e-169 600.5 420 71.2
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 1.5e-169 600.1 407 74.0
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 1.9e-169 599.7 407 73.2
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 4.3e-169 598.6 414 73.7
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 5.7e-169 598.2 407 72.7
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 9.6e-169 597.4 418 71.8
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 8.2e-168 594.3 420 71.2
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 1.4e-167 593.6 416 72.6
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 1.4e-167 593.6 421 71.5
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 9.0e-167 590.9 408 72.5
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 3.4e-166 589.0 416 70.2
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 4.5e-166 588.6 413 70.0
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 5.9e-166 588.2 416 70.0
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 7.6e-166 587.8 471 67.9
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 1.3e-165 587.0 418 70.1
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 1.7e-165 586.6 416 69.5
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 3.2e-164 582.4 412 69.2
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 4.2e-164 582.0 420 70.7
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 7.2e-164 581.3 412 69.4
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 7.2e-164 581.3 403 70.0
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 1.6e-163 580.1 418 69.4
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 2.1e-163 579.7 416 69.2
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 3.6e-163 578.9 422 69.0
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 1.0e-162 577.4 416 67.8
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 6.7e-162 574.7 414 68.8
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 1.5e-161 573.5 416 68.5
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.5e-161 573.5 461 65.3
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 3.3e-161 572.4 445 65.4
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 5.7e-161 571.6 445 65.4
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 1.3e-160 570.5 421 67.2
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 1.3e-160 570.5 408 69.6
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 2.2e-160 569.7 411 69.1
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 2.2e-160 569.7 415 68.4
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 2.8e-160 569.3 418 67.9
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 3.7e-160 568.9 445 65.6
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 3.7e-160 568.9 408 69.1
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 8.2e-160 567.8 421 67.5
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.8e-159 566.6 426 66.4
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 2.0e-158 563.1 414 68.4
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 3.4e-158 562.4 420 67.9
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 3.4e-158 562.4 418 67.0
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 7.7e-158 561.2 417 66.9
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 1.2e-155 553.9 411 67.4
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 1.2e-155 553.9 405 68.1
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 7.9e-155 551.2 462 62.1
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 1.3e-152 543.9 420 66.0
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 2.8e-152 542.7 492 59.6
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 3.7e-152 542.3 455 63.5
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 6.3e-152 541.6 416 66.3
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.4e-151 539.7 448 63.6
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 9.4e-148 527.7 382 70.2
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 6.1e-147 525.0 443 62.3
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.5e-145 520.4 441 63.5
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 2.2e-144 516.5 422 62.3
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 1.1e-143 514.2 400 66.8
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 1.4e-143 513.8 334 75.4
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 1.2e-142 510.8 400 66.2
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 4.5e-142 508.8 420 63.3
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 1.1e-140 504.2 446 59.0
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 2.5e-140 503.1 400 65.2
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 3.2e-140 502.7 408 64.2
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 9.4e-140 501.1 455 55.8
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 1.6e-139 500.4 410 59.8
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 8.0e-139 498.0 481 56.3
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 8.8e-138 494.6 346 73.1
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 3.3e-137 492.7 423 60.0
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 5.7e-137 491.9 410 61.2
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 7.7e-134 481.5 360 66.9
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 6.8e-130 468.4 303 76.2
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 1.7e-128 463.8 426 55.9
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 2.1e-123 446.8 264 83.3
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 5.4e-119 432.2 322 70.8
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 1.9e-116 423.7 410 54.6
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.3e-114 416.8 287 72.8
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 4.6e-110 402.5 244 84.0
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 1.5e-105 387.5 285 66.7
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 2.0e-102 377.1 421 51.1
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 2.1e-99 367.1 420 47.4
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 6.2e-99 365.5 389 50.9
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.4e-98 364.4 409 50.6
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 3.0e-93 346.7 218 80.3
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.9e-88 330.1 212 78.8
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 3.8e-88 329.7 318 56.9
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 5.1e-85 319.3 242 66.1
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 2.5e-84 317.0 285 57.9
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 1.1e-79 301.6 310 52.9
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 1.9e-79 300.8 382 45.8
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 3.0e-77 293.5 292 54.1
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 1.6e-75 287.7 361 48.8
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 7.1e-63 245.7 225 58.7
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 2.1e-59 234.2 402 37.6
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 1.8e-58 231.1 148 75.7
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 3.1e-58 230.3 166 69.9
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.3e-53 214.2 137 75.2
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 6.7e-53 212.6 190 60.5
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.2e-49 201.8 179 58.7
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 7.6e-49 199.1 125 77.6
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 2.8e-43 180.6 403 33.5
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 5.5e-39 166.4 306 35.9
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 2.4e-34 151.0 101 68.3
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 9.1e-34 149.1 88 81.8
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 2.0e-33 147.9 117 70.9
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 5.9e-33 146.4 106 71.7
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 8.0e-30 136.0 157 49.0
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 6.1e-22 109.8 359 27.0
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 4.0e-21 107.1 207 33.8
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.4e-18 97.8 109 47.7
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.7e-17 92.8 65 72.3
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.2e-16 91.3 113 49.6
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 5.5e-15 86.7 54 75.9
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 6.8e-13 79.7 79 53.2


User provided reference genes

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