Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 3.1e-238 828.2 421 100.0
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 6.2e-231 803.9 437 94.5
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.6e-141 506.9 412 67.2
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 9.0e-137 491.1 450 61.8
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 4.9e-135 485.3 430 63.3
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.4e-134 483.8 476 59.9
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 4.6e-133 478.8 433 63.5
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 6.2e-130 468.4 418 61.7
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 8.1e-130 468.0 431 61.0
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.5e-123 447.2 436 59.4
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 1.1e-110 404.4 404 58.2
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 6.7e-108 395.2 479 48.4
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 2.2e-106 390.2 419 53.9
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 3.1e-105 386.3 431 52.2
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.2e-104 384.4 415 52.0
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 3.4e-104 382.9 430 52.6
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.2e-102 376.3 423 51.1
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.4e-102 374.8 423 51.3
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 1.0e-100 371.3 434 50.2
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.0e-100 369.8 427 50.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 3.9e-100 369.4 418 51.4
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 6.7e-100 368.6 422 50.7
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 8.8e-100 368.2 423 49.9
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 4.3e-99 365.9 432 48.8
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 4.3e-99 365.9 403 52.9
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 8.2e-98 361.7 415 51.3
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 1.4e-97 360.9 419 51.3
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 2.4e-97 360.1 421 49.6
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 2.6e-96 356.7 401 51.1
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.0e-95 354.8 385 54.3
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.9e-94 350.5 415 49.9
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 5.5e-94 349.0 468 47.0
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.6e-93 347.4 435 46.7
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 3.6e-93 346.3 415 48.7
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 3.6e-93 346.3 414 51.2
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 2.3e-92 343.6 408 49.8
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.3e-92 343.6 398 51.8
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 3.0e-92 343.2 396 51.3
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 6.7e-92 342.0 412 49.5
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 6.7e-92 342.0 433 46.2
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 2.6e-91 340.1 410 50.0
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 4.4e-91 339.3 404 50.0
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 4.4e-91 339.3 421 47.7
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 5.7e-91 339.0 419 49.6
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 5.7e-91 339.0 417 47.5
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 5.7e-91 339.0 416 47.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.3e-90 337.8 484 43.6
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.3e-90 337.8 422 49.5
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 1.3e-90 337.8 410 50.0
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 3.7e-90 336.3 421 48.2
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 3.7e-90 336.3 554 41.9
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.1e-89 334.7 414 48.3
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 4.1e-89 332.8 489 44.6
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 1.2e-88 331.3 382 50.0
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 3.8e-87 326.2 412 47.1
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.1e-85 320.5 232 71.1
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 2.1e-85 320.5 422 47.2
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 6.1e-85 318.9 407 47.2
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 6.1e-85 318.9 411 48.4
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 8.0e-85 318.5 485 43.9
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 1.8e-84 317.4 405 48.1
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 2.3e-84 317.0 400 47.8
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 3.3e-83 313.2 419 44.6
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 3.3e-83 313.2 474 43.7
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 9.7e-83 311.6 419 45.8
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 8.2e-82 308.5 430 43.5
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 2.4e-81 307.0 453 45.5
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 1.2e-77 294.7 431 42.5
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.2e-77 294.7 313 51.4
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 4.7e-77 292.7 420 44.5
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 2.6e-75 287.0 418 43.5
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 9.7e-75 285.0 403 43.9
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 2.8e-74 283.5 426 43.2
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 3.7e-74 283.1 428 43.2
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 4.8e-74 282.7 429 42.7
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 4.8e-74 282.7 429 42.7
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 7.0e-73 278.9 429 42.4
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.2e-72 278.1 432 42.4
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.2e-72 278.1 432 42.4
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 2.0e-72 277.3 421 43.5
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 1.0e-71 275.0 437 41.9
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 1.3e-71 274.6 413 42.9
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 2.9e-71 273.5 346 46.2
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 3.2e-70 270.0 426 40.8
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 2.1e-69 267.3 421 41.8
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 4.0e-68 263.1 430 39.5
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.3e-66 258.1 417 42.0
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 2.2e-66 257.3 360 45.3
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 1.8e-65 254.2 422 41.2
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 4.1e-65 253.1 431 40.1
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 9.1e-65 251.9 407 40.8
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 4.2e-62 243.0 422 38.9
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 4.7e-61 239.6 389 41.9
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 6.8e-60 235.7 201 62.2
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 9.5e-54 215.3 271 50.6
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 3.3e-46 190.3 207 52.2
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 8.9e-44 182.2 512 32.4
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 3.4e-35 153.7 123 67.5
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 1.1e-33 148.7 188 45.2
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 9.6e-30 135.6 137 53.3
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 4.7e-29 133.3 218 37.6
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.1e-28 132.1 431 30.2
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.1e-28 132.1 431 30.2
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 8.9e-28 129.0 239 41.4
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 2.2e-26 124.4 111 54.1
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.1e-25 122.1 176 44.3
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 6.0e-24 116.3 92 60.9
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 4.3e-22 110.2 144 47.2
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 7.3e-22 109.4 128 50.8
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 2.8e-21 107.5 68 69.1
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.2e-16 92.0 218 31.2
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 1.8e-12 78.2 405 25.9
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 9.9e-11 72.4 92 45.7
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 3.8e-10 70.5 74 48.6
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 9.3e-09 65.9 102 39.2
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 9.3e-09 65.9 312 27.6
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.6e-08 63.5 77 48.1
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.0e-08 63.2 77 46.8
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.0e-08 63.2 77 46.8
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 7.9e-08 62.8 66 51.5
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.3e-07 61.2 77 45.5
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 3.9e-07 60.5 139 32.4
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 1.1e-06 58.9 139 33.1
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.1e-06 58.9 109 38.5
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.9e-06 58.2 147 27.9
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 3.3e-06 57.4 139 30.9
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 4.3e-06 57.0 74 44.6
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 5.6e-06 56.6 138 33.3
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 9.6e-06 55.8 140 32.1


User provided reference genes

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