Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.4e-167 592.8 287 100.0
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.4e-167 592.8 287 100.0
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 3.1e-167 591.7 287 99.7
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 3.2e-127 458.8 282 77.3
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 2.6e-121 439.1 277 76.9
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 3.4e-121 438.7 278 77.0
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 2.2e-120 436.0 276 74.3
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 2.1e-118 429.5 277 75.5
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 3.2e-111 405.6 297 67.7
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 1.6e-110 403.3 289 67.5
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 2.3e-109 399.4 308 65.3
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 1.3e-104 383.6 274 66.8
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 6.4e-104 381.3 278 64.4
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 4.2e-103 378.6 273 65.2
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 1.2e-102 377.1 278 65.5
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 7.8e-102 374.4 278 64.4
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 5.1e-101 371.7 274 65.7
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 3.3e-100 369.0 318 59.1
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 4.3e-100 368.6 274 65.3
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 7.3e-100 367.9 273 64.1
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 1.1e-98 364.0 271 63.5
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 3.1e-98 362.5 271 64.2
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 4.0e-98 362.1 278 64.4
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 4.0e-98 362.1 275 62.9
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 2.6e-97 359.4 280 59.6
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 4.4e-97 358.6 279 60.9
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 9.9e-97 357.5 279 60.9
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 2.9e-96 355.9 279 60.6
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 4.9e-96 355.1 271 62.4
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 6.4e-96 354.8 280 62.1
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 3.2e-95 352.4 278 61.2
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 5.4e-95 351.7 298 59.4
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 9.3e-95 350.9 278 61.5
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.2e-94 350.5 281 58.4
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.1e-94 349.7 281 58.4
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.0e-93 347.4 278 59.7
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 2.3e-93 346.3 278 60.4
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 3.0e-93 345.9 281 59.4
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 3.9e-93 345.5 281 59.1
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 5.1e-93 345.1 278 59.4
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 6.6e-93 344.7 279 58.4
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 1.5e-92 343.6 287 56.1
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 1.5e-92 343.6 271 60.5
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 1.1e-90 337.4 277 58.8
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 2.4e-90 336.3 279 55.6
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 3.1e-90 335.9 279 57.0
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 3.4e-89 332.4 273 58.2
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 4.5e-89 332.0 265 59.2
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 2.2e-88 329.7 271 58.7
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 3.8e-88 328.9 284 58.1
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 3.8e-88 328.9 273 57.1
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 1.1e-87 327.4 273 57.5
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 7.9e-86 321.2 272 58.1
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.0e-85 320.9 274 56.6
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 2.3e-85 319.7 271 56.8
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 3.0e-85 319.3 279 55.2
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 3.9e-85 318.9 242 65.3
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 3.7e-83 312.4 224 64.3
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 6.9e-82 308.1 271 55.4
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 1.2e-81 307.4 271 54.2
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 2.9e-80 302.8 273 51.3
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 1.4e-79 300.4 276 54.3
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 1.9e-79 300.1 236 61.4
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 9.3e-79 297.7 224 62.9
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 2.7e-78 296.2 281 54.1
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 3.5e-78 295.8 227 61.7
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 7.4e-76 288.1 286 50.0
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.6e-75 287.0 278 51.1
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 6.2e-75 285.0 269 51.7
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.1e-74 284.3 271 53.1
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 8.4e-72 274.6 181 75.7
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 2.5e-71 273.1 278 52.2
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.6e-70 270.4 298 46.6
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.3e-69 266.5 265 47.9
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 1.6e-67 260.4 196 64.3
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 6.3e-67 258.5 280 45.7
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 8.2e-67 258.1 188 66.0
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 3.1e-66 256.1 231 54.5
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 2.2e-64 250.0 176 68.8
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 8.5e-64 248.1 276 42.8
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.8e-58 230.3 328 40.5
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 1.4e-55 220.7 278 41.7
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 1.4e-55 220.7 172 61.6
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 1.9e-55 220.3 164 65.9
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 5.7e-52 208.8 187 53.5
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 8.5e-48 194.9 276 37.7
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 9.4e-47 191.4 250 42.0
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.1e-44 184.5 132 64.4
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 1.3e-43 181.0 241 42.7
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 3.8e-40 169.5 278 33.1
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 5.0e-40 169.1 135 57.0
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 5.3e-34 149.1 150 52.0
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 5.3e-34 149.1 311 32.5
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.5e-31 141.0 119 58.8
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 9.4e-31 138.3 130 56.2
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 7.5e-28 128.6 87 67.8
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 2.3e-24 117.1 146 49.3
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 1.5e-23 114.4 84 67.9
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 9.8e-20 101.7 282 29.4
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 5.4e-18 95.9 81 61.7
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.9e-15 87.4 117 36.8
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 8.9e-13 78.6 254 28.0
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.3e-11 74.7 231 25.5
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.1e-10 71.6 241 25.7
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.4e-10 69.3 220 26.8
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 9.2e-10 68.6 201 27.4
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 1.2e-09 68.2 201 27.4
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 2.7e-09 67.0 238 27.7
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 3.5e-09 66.6 258 24.4
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 4.6e-09 66.2 247 26.7
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 6.0e-09 65.9 185 29.2
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 7.8e-09 65.5 268 25.4
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 1.0e-08 65.1 255 25.1
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.0e-08 65.1 252 24.6
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 1.0e-08 65.1 161 29.2
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.3e-08 64.7 248 23.8
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.3e-08 64.7 254 23.6
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.7e-08 64.3 194 26.8
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 2.3e-08 63.9 231 26.8
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 3.0e-08 63.5 244 27.5
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.9e-08 63.2 222 26.1
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 3.9e-08 63.2 228 25.9
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 3.9e-08 63.2 209 26.8
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 5.0e-08 62.8 180 28.3
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 5.0e-08 62.8 238 26.5
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 6.6e-08 62.4 222 28.4
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 6.6e-08 62.4 250 23.2
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 6.6e-08 62.4 229 25.8
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 6.6e-08 62.4 224 25.4
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 6.6e-08 62.4 212 27.4
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 6.6e-08 62.4 161 29.2
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 8.6e-08 62.0 159 28.3
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 8.6e-08 62.0 163 28.8
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 8.6e-08 62.0 232 25.0
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 1.5e-07 61.2 153 28.8
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.5e-07 61.2 225 24.4
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.9e-07 60.8 220 25.0
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.9e-07 60.8 220 25.0
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.9e-07 60.8 211 26.1
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.9e-07 60.8 153 29.4
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 1.9e-07 60.8 172 31.4
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.5e-07 60.5 156 28.8
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 2.5e-07 60.5 197 26.4
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 2.5e-07 60.5 327 21.7
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 4.3e-07 59.7 228 26.3
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 4.3e-07 59.7 174 28.2
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 5.6e-07 59.3 257 24.5
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.6e-07 59.3 139 28.1
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 7.3e-07 58.9 226 26.5
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 7.3e-07 58.9 154 28.6
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 7.3e-07 58.9 222 26.6
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 9.5e-07 58.5 263 22.8
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 9.5e-07 58.5 147 33.3
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 9.5e-07 58.5 237 25.7
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.2e-06 58.2 211 24.2
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-06 58.2 150 27.3
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-06 58.2 150 27.3
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.2e-06 58.2 228 25.4
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.6e-06 57.8 194 24.7
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 2.1e-06 57.4 227 26.0
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 2.1e-06 57.4 225 24.4
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 2.1e-06 57.4 216 25.5
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 2.1e-06 57.4 154 28.6
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 2.1e-06 57.4 55 49.1
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.8e-06 57.0 154 27.9
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 2.8e-06 57.0 154 28.6
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 2.8e-06 57.0 154 28.6
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 3.6e-06 56.6 161 27.3
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 3.6e-06 56.6 154 27.3
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 3.6e-06 56.6 113 31.0
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 4.7e-06 56.2 227 25.6
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 4.7e-06 56.2 227 25.6
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 4.7e-06 56.2 154 28.6
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 6.2e-06 55.8 39 59.0
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 6.2e-06 55.8 165 30.3
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 6.2e-06 55.8 180 25.0
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 8.0e-06 55.5 154 27.9


User provided reference genes

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