Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 3471.0 1764 100.0
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 2833.5 1742 85.6
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 2117.0 1774 63.8
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 2092.0 1772 63.3
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 2040.0 1784 62.6
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 2023.4 1778 62.1
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1992.2 1775 61.1
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1985.3 1775 60.5
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 1916.7 1776 59.6
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 0.0e+00 1900.2 1697 60.2
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 0.0e+00 1809.7 1702 59.2
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1469.9 1805 47.9
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1466.8 1912 46.2
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1456.8 1857 46.6
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 0.0e+00 1424.5 1249 60.3
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1406.7 1814 46.4
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1399.0 1791 47.0
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1390.2 1832 45.4
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1389.8 1822 46.3
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1380.2 1810 46.2
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1362.4 1780 45.8
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1360.9 1804 45.6
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1354.7 1795 45.3
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1351.3 1797 45.1
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1350.5 1793 45.5
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1342.4 1784 45.6
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1339.3 1783 45.8
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1333.9 1775 45.7
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1333.5 1775 45.9
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1330.9 1818 44.1
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1330.5 1798 44.2
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1330.1 1775 45.6
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1328.2 1819 44.7
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1324.3 1820 44.6
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1322.4 1823 44.5
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1322.0 1774 45.2
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1311.6 1821 44.2
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1307.7 1398 51.9
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1295.0 1811 43.9
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1293.5 1827 43.1
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1287.3 1815 43.5
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1282.3 1818 44.6
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1276.9 1446 49.0
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1267.7 1827 42.6
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1256.9 1675 45.1
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1250.7 1812 41.7
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1237.2 1808 43.2
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1234.2 1810 41.3
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 0.0e+00 1232.6 1521 47.3
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1224.5 1788 41.4
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 0.0e+00 1219.9 1844 41.2
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 0.0e+00 1219.1 1538 45.7
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 1218.8 1782 40.9
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 0.0e+00 1208.4 1826 40.9
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 0.0e+00 1199.1 1523 47.6
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1177.5 1814 40.5
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1174.5 1777 41.6
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1162.9 1781 41.5
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 0.0e+00 1161.4 1791 40.5
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1161.0 1781 39.7
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 1160.2 1777 40.6
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1160.2 1775 41.0
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1159.1 1405 46.7
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1158.3 1784 40.5
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1158.3 1768 39.8
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1157.5 1785 40.7
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1142.1 1776 40.0
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1134.0 1883 39.2
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 0.0e+00 1131.7 1764 40.9
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1130.2 1800 40.8
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1127.1 1799 40.2
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1127.1 1788 40.2
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 0.0e+00 1124.0 1796 40.5
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1116.7 1824 39.1
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 0.0e+00 1115.1 1754 40.2
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1114.8 1788 40.1
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 0.0e+00 1107.0 1795 39.7
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 0.0e+00 1106.3 1746 40.5
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 0.0e+00 1104.7 1761 40.6
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1100.1 1782 39.3
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 0.0e+00 1099.7 1766 39.2
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 0.0e+00 1095.9 1791 39.3
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 2.2e-308 1063.1 1505 43.3
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 3.1e-302 1042.7 1747 38.6
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.7e-300 1036.9 1850 36.3
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 2.1e-298 1030.0 1765 37.2
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 5.7e-296 1021.9 1021 54.5
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 2.4e-294 1016.5 1526 41.3
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 1.2e-290 1004.2 1520 41.2
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 1.6e-290 1003.8 1517 41.1
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 3.4e-288 996.1 1793 37.4
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 3.7e-287 992.6 1520 40.9
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 2.9e-271 939.9 1766 36.1
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 6.6e-268 928.7 970 50.7
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 1.8e-265 920.6 1804 36.9
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 3.8e-239 833.2 1794 33.9
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 4.4e-203 713.4 733 54.0
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 3.6e-181 640.6 1040 38.4
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 9.2e-169 599.4 1246 33.8
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.8e-164 585.1 1515 29.8
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 1.2e-155 555.8 1609 29.9
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 4.9e-154 550.4 938 38.3
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 5.1e-151 540.4 981 37.8
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 2.4e-140 505.0 745 39.9
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 2.7e-128 464.9 717 42.0
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 7.4e-126 456.8 988 32.4
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.2e-120 439.5 1112 28.4
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 5.7e-118 430.6 1257 29.8
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 1.3e-117 429.5 540 45.4
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 2.6e-115 421.8 1079 29.7
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 2.9e-114 418.3 572 44.8
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 8.5e-114 416.8 430 56.0
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 2.3e-111 408.7 885 33.6
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.2e-86 326.6 559 38.5
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.7e-83 315.5 632 35.1
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.1e-80 305.8 657 32.4
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 9.8e-70 270.4 463 37.4
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.6e-64 253.1 193 63.2
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 2.6e-54 219.2 915 25.9
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 5.4e-52 211.5 141 67.4
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 1.6e-51 209.9 499 32.9
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 2.1e-40 172.9 125 68.8
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 8.9e-39 167.5 579 27.1
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.0e-35 154.8 228 43.0
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 1.5e-30 140.2 294 35.4
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.1e-28 134.0 122 53.3
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 1.9e-28 133.3 133 54.1
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.2e-27 130.6 166 45.8
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 1.2e-27 130.6 147 51.0
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.6e-27 130.2 194 41.8
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.0e-27 128.3 194 41.8
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 1.0e-26 127.5 343 33.8
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.9e-26 125.6 203 38.9
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 5.1e-26 125.2 127 50.4
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.7e-26 124.4 203 38.9
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 1.1e-25 124.0 318 34.0
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 3.3e-25 122.5 70 80.0
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.6e-25 121.7 181 40.3
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.3e-24 120.6 136 49.3
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 1.5e-22 113.6 166 41.0
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 2.7e-19 102.8 65 76.9
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.0e-19 101.7 151 37.7
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.1e-18 98.6 151 39.1
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.3e-17 95.9 142 39.4
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.4e-17 94.7 151 38.4
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.1e-16 93.2 151 38.4
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.8e-16 92.0 120 40.8
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.0e-14 86.7 193 34.2
Lalb_Chr10g0099061 Lupinus albus HOM05D004423 ORTHO05D005464 5.8e-14 85.1 68 69.1
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.4e-13 81.3 137 40.1
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 1.4e-12 80.5 106 37.7
Medtr2g060590 Medicago truncatula HOM05D004423 ORTHO05D005464 1.2e-11 77.4 104 47.1
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 2.7e-11 76.3 599 22.5
Medtr2g060600 Medicago truncatula HOM05D004423 ORTHO05D005464 6.0e-11 75.1 235 27.7
Medtr2g060610 Medicago truncatula HOM05D004423 ORTHO05D005464 3.9e-10 72.4 73 54.8
Medtr2g060570 Medicago truncatula HOM05D004423 ORTHO05D005464 1.3e-08 67.4 87 47.1
Medtr2g060565 Medicago truncatula HOM05D004423 ORTHO05D005464 2.1e-08 66.6 57 54.4
HPP92_023982 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.5e-06 58.9 107 29.0


User provided reference genes

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