Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CFQ5KB Arachis hypogaea HOM05D000361 ORTHO05D031626 1.1e-30 136.0 70 100.0
arahy.Tifrunner.gnm1.ann1.76Y6MV Arachis hypogaea HOM05D000361 ORTHO05D008294 1.2e-19 99.4 57 91.2
arahy.Tifrunner.gnm1.ann1.QR0DXW Arachis hypogaea HOM05D000361 ORTHO05D008294 1.2e-19 99.4 57 91.2
Ciclev10014269m.g Citrus clementina HOM05D000361 ORTHO05D008294 1.1e-14 82.8 57 71.9
CSS0044464 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D008294 3.3e-14 81.3 57 71.9
Lsat_1_v5_gn_9_100181 Lactuca sativa HOM05D000361 ORTHO05D008294 3.3e-14 81.3 57 71.9
PGR044G0817 Punica granatum HOM05D000361 ORTHO05D008294 3.3e-14 81.3 57 71.9
Medtr8g090000 Medicago truncatula HOM05D000361 ORTHO05D008294 7.4e-14 80.1 57 68.4
Psat7g056760 Pisum sativum HOM05D000361 ORTHO05D008294 7.4e-14 80.1 55 70.9
DCAR_003731 Daucus carota HOM05D000361 ORTHO05D008294 9.7e-14 79.7 57 71.9
Lj6g0011881 Lotus japonicus HOM05D000361 ORTHO05D008294 9.7e-14 79.7 57 73.7
QL11p010760 Quercus lobata HOM05D000361 ORTHO05D008294 9.7e-14 79.7 57 71.9
Sc24g0002810 Simmondsia chinensis HOM05D000361 ORTHO05D008294 1.3e-13 79.3 57 68.4
Nn1g09868 Nelumbo nucifera HOM05D000361 ORTHO05D008294 1.7e-13 79.0 57 70.2
Peaxi162Scf00036g00321 Petunia axillaris HOM05D000361 ORTHO05D008294 1.7e-13 79.0 57 68.4
PGSC0003DMG400013633 Solanum tuberosum HOM05D000361 ORTHO05D008294 1.7e-13 79.0 57 68.4
Dinv07937 Davidia involucrata HOM05D000361 ORTHO05D008294 2.2e-13 78.6 57 70.2
Dinv18416 Davidia involucrata HOM05D000361 ORTHO05D008294 2.2e-13 78.6 57 70.2
Lj1C1152G4 Lonicera japonica HOM05D000361 ORTHO05D008294 2.2e-13 78.6 57 68.4
GSVIVG01003253001 Vitis vinifera HOM05D000361 ORTHO05D008294 2.2e-13 78.6 57 71.9
Cc09_g04600 Coffea canephora HOM05D000361 ORTHO05D008294 2.8e-13 78.2 57 70.2
Rhsim13G0136200 Rhododendron simsii HOM05D000361 ORTHO05D008294 2.8e-13 78.2 57 70.2
Solyc02g082180.3 Solanum lycopersicum HOM05D000361 ORTHO05D008294 2.8e-13 78.2 57 66.7
Sopen02g026840 Solanum pennellii HOM05D000361 ORTHO05D008294 2.8e-13 78.2 57 66.7
ECA240G0581 Erigeron canadensis HOM05D000361 ORTHO05D008294 3.7e-13 77.8 57 70.2
CAN.G1862.3 Capsicum annuum HOM05D000361 ORTHO05D000137 4.8e-13 77.4 57 68.4
CAN.G809.9 Capsicum annuum HOM05D000361 ORTHO05D008294 4.8e-13 77.4 57 68.4
CiPaw.09G140700 Carya illinoinensis HOM05D000361 ORTHO05D008294 4.8e-13 77.4 57 70.2
Atru.chr10.231 Acer truncatum HOM05D000361 ORTHO05D008294 6.3e-13 77.0 57 66.7
Cfa001165 Carpinus fangiana HOM05D000361 ORTHO05D008294 8.2e-13 76.6 57 68.4
CANSAT35G1399 Cannabis sativa HOM05D000361 ORTHO05D008294 1.1e-12 76.3 57 68.4
Ca_17753_v3 Cicer arietinum L. HOM05D000361 ORTHO05D008294 1.1e-12 76.3 57 64.9
SalBow6G3398 Salvia bowleyana HOM05D000361 ORTHO05D008294 1.1e-12 76.3 57 66.7
SalBow6G5453 Salvia bowleyana HOM05D000361 ORTHO05D008294 1.1e-12 76.3 57 66.7
Nitab4.5_0001815g0090 Nicotiana tabacum HOM05D000361 ORTHO05D008294 1.4e-12 75.9 57 66.7
Nitab4.5_0007687g0010 Nicotiana tabacum HOM05D000361 ORTHO05D008294 1.4e-12 75.9 57 66.7
Glyma.09G047300 Glycine max HOM05D000361 ORTHO05D008294 2.4e-12 75.1 57 68.4
Prupe.4G121000 Prunus persica HOM05D000361 ORTHO05D008294 2.4e-12 75.1 57 66.7
SHI08119 Sapria himalayana HOM05D000361 ORTHO05D008294 2.4e-12 75.1 57 64.9
TAR627G0013 Trochodendron aralioides HOM05D000361 ORTHO05D008294 2.4e-12 75.1 57 66.7
vmacro03573 Vaccinium macrocarpon HOM05D000361 ORTHO05D008294 2.4e-12 75.1 57 68.4
Haze_05186 Corylus avellana HOM05D000361 ORTHO05D008294 3.1e-12 74.7 57 66.7
VMungo1309G2334 Vigna mungo HOM05D000361 ORTHO05D008294 4.1e-12 74.3 57 68.4
Phvul.009G245600 Phaseolus vulgaris HOM05D000361 ORTHO05D008294 5.3e-12 73.9 57 68.4
Glyma.15G154900 Glycine max HOM05D000361 ORTHO05D008294 7.0e-12 73.6 57 66.7
Cpa.g.sc30.68 Carica papaya HOM05D000361 ORTHO05D008294 9.1e-12 73.2 57 64.9
FvH4_3g13360 Fragaria vesca HOM05D000361 ORTHO05D008294 9.1e-12 73.2 57 66.7
FAN11G3268 Fragaria x ananassa HOM05D000361 ORTHO05D008294 9.1e-12 73.2 57 66.7
FAN21G0569 Fragaria x ananassa HOM05D000361 ORTHO05D008294 9.1e-12 73.2 57 66.7
FAN25G0043 Fragaria x ananassa HOM05D000361 ORTHO05D008294 9.1e-12 73.2 57 66.7
FAN25G0195 Fragaria x ananassa HOM05D000361 ORTHO05D008294 9.1e-12 73.2 57 66.7
Potri.001G074000 Populus trichocarpa HOM05D000361 ORTHO05D008294 9.1e-12 73.2 57 63.2
MSTRG.13294 Avicennia marina HOM05D000361 ORTHO05D008294 1.2e-11 72.8 57 68.4
RcHm_v2.0_Chr5g0022071 Rosa chinensis HOM05D000361 ORTHO05D008294 1.2e-11 72.8 57 66.7
FAN16G0385 Fragaria x ananassa HOM05D000361 ORTHO05D008294 2.0e-11 72.0 57 66.7
Aa31LG9G8530 Aethionema arabicum HOM05D000361 ORTHO05D008294 4.5e-11 70.9 57 61.4
SGA_v2.0_scaffold341G49368 Striga asiatica HOM05D000361 ORTHO05D008294 5.9e-11 70.5 57 61.4
ClCG01G025960 Citrullus lanatus HOM05D000361 ORTHO05D008294 7.7e-11 70.1 57 59.6
MELO3C006995.2 Cucumis melo HOM05D000361 ORTHO05D008294 7.7e-11 70.1 57 61.4
CsaV3_6G053180 Cucumis sativus L. HOM05D000361 ORTHO05D008294 7.7e-11 70.1 57 61.4
Manes.16G060200 Manihot esculenta HOM05D000361 ORTHO05D008294 7.7e-11 70.1 57 61.4
Sabra01G0052300 Salix brachista HOM05D000361 ORTHO05D008294 7.7e-11 70.1 57 59.6
HanXRQChr07g0187741 Helianthus annuus HOM05D000361 ORTHO05D008294 1.0e-10 69.7 57 61.4
PSO541G2719 Papaver somniferum HOM05D000361 ORTHO05D008294 1.0e-10 69.7 57 63.2
PSO541G6368 Papaver somniferum HOM05D000361 ORTHO05D008294 1.0e-10 69.7 57 63.2
BcaC03g16683 Brassica carinata HOM05D000361 ORTHO05D008294 1.7e-10 68.9 59 57.6
C02p45220 Brassica napus HOM05D000361 ORTHO05D008294 1.7e-10 68.9 59 57.6
TPR.G31384 Trifolium pratense HOM05D000002 ORTHO05D000001 2.2e-10 68.6 55 60.0
TWI63G1117 Tripterygium wilfordii HOM05D000361 ORTHO05D008294 2.2e-10 68.6 57 59.6
MD10G1224200 Malus domestica HOM05D000361 ORTHO05D008294 2.9e-10 68.2 57 63.2
Aqoxy1G01354 Aquilegia oxysepala HOM05D000361 ORTHO05D008294 3.8e-10 67.8 57 63.2
PSO675G8445 Papaver somniferum HOM05D000361 ORTHO05D008294 3.8e-10 67.8 57 61.4
Sed0009371 Sechium edule HOM05D000361 ORTHO05D008294 3.8e-10 67.8 57 57.9
Thhalv10000779m.g Eutrema salsugineum HOM05D000361 ORTHO05D008294 5.0e-10 67.4 57 57.9
Lalb_Chr18g0051851 Lupinus albus HOM05D000361 ORTHO05D008294 5.0e-10 67.4 57 64.9
AUR62040986 Chenopodium quinoa HOM05D000361 ORTHO05D008294 6.5e-10 67.0 57 59.6
AUR62042103 Chenopodium quinoa HOM05D000361 ORTHO05D008294 6.5e-10 67.0 57 59.6
AL8G14990 Arabidopsis lyrata HOM05D000361 ORTHO05D008294 8.5e-10 66.6 57 57.9
BcaC06g31601 Brassica carinata HOM05D000361 ORTHO05D008294 8.5e-10 66.6 57 57.9
Carub.0008s0363 Capsella rubella HOM05D000361 ORTHO05D008294 8.5e-10 66.6 57 57.9
CARHR178260 Cardamine hirsuta HOM05D000361 ORTHO05D008294 8.5e-10 66.6 57 57.9
MD05G1242400 Malus domestica HOM05D000361 ORTHO05D008294 8.5e-10 66.6 57 61.4
Sp2g09450 Schrenkiella parvula HOM05D000361 ORTHO05D008294 8.5e-10 66.6 57 57.9
Thecc.02G000800 Theobroma cacao HOM05D000361 ORTHO05D008294 8.5e-10 66.6 57 59.6
BolC2t10553H Brassica oleracea HOM05D000361 ORTHO05D008294 1.1e-09 66.2 59 55.9
COL.COLO4_25023 Corchorus olitorius HOM05D000361 ORTHO05D008294 1.1e-09 66.2 57 61.4
BcaC06g34528 Brassica carinata HOM05D000361 ORTHO05D008294 1.5e-09 65.9 57 56.1
C07p27530 Brassica napus HOM05D000361 ORTHO05D008294 1.5e-09 65.9 57 56.1
BolC7t43284H Brassica oleracea HOM05D000361 ORTHO05D008294 1.5e-09 65.9 57 56.1
arahy.Tifrunner.gnm1.ann1.PX7MES Arachis hypogaea HOM05D004117 ORTHO05D004520 1.9e-09 65.5 67 61.2
TPR.G6256 Trifolium pratense HOM05D000361 ORTHO05D008294 1.9e-09 65.5 71 52.1
AT5G44635 Arabidopsis thaliana HOM05D000361 ORTHO05D008294 2.5e-09 65.1 57 56.1
A06p47040 Brassica napus HOM05D000361 ORTHO05D008294 2.5e-09 65.1 57 56.1
BraA06t27577Z Brassica rapa HOM05D000361 ORTHO05D008294 2.5e-09 65.1 57 56.1
CDE10G0589 Ceratophyllum demersum HOM05D000361 ORTHO05D008294 4.2e-09 64.3 57 57.9
Duzib132G1205 Durio zibethinus HOM05D000361 ORTHO05D008294 4.2e-09 64.3 57 57.9
Gohir.A03G218100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 4.2e-09 64.3 57 57.9
Gohir.D02G240100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 4.2e-09 64.3 57 57.9
EL10Ac7g17302 Beta vulgaris HOM05D000361 ORTHO05D008294 7.2e-09 63.5 57 56.1
Ah.15g091830 Amaranthus hybridus HOM05D000361 ORTHO05D008294 9.4e-09 63.2 57 54.4
CAN.G64.12 Capsicum annuum HOM05D000361 ORTHO05D031626 9.4e-09 63.2 44 68.2
MBI06_g04183_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D031626 9.4e-09 63.2 57 56.1
MBI06_g26561_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D008294 9.4e-09 63.2 57 56.1
Medtr2g437540 Medicago truncatula HOM05D000361 ORTHO05D008294 9.4e-09 63.2 55 56.4
Hund20134 Selenicereus undatus HOM05D000361 ORTHO05D008294 1.6e-08 62.4 57 54.4
unitig_37.g13054 Utricularia gibba HOM05D000361 ORTHO05D008294 2.1e-08 62.0 62 54.8
Zm00001eb350340 Zea mays HOM05D000361 ORTHO05D008294 6.1e-08 60.5 57 57.9
Zm00001eb284360 Zea mays HOM05D000361 ORTHO05D008294 1.0e-07 59.7 57 56.1
Oeu039911.1 Olea europaea HOM05D000361 ORTHO05D008294 1.4e-07 59.3 37 73.0
Os05g0235800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D008294 1.4e-07 59.3 57 56.1
HPP92_000506 Vanilla planifolia HOM05D000361 ORTHO05D008294 2.3e-07 58.5 57 52.6
SMO364G0539 Selaginella moellendorffii HOM05D000361 ORTHO05D008294 1.5e-06 55.8 57 47.4


User provided reference genes

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